Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

19732113 .. 19733426

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTGCAGCACACCATGGACAATGACAAGGCTAGTGAGATGGCGCGTGAAGGGCTGGGCTTCATGTTTCTTGGCTTGCAGGTTTCCTTTGGATGATGAACCAGCCGGGAGATTTTGCCCTGCAATGCCGCAATTGCCAATACGAAACATGGCTCTCGATACGCAGGGCGAAAGCAGAAGCAATGAGATGGGGAAAAAGATGTCGCGGCACAAAAAATGTGACAGAGAGCGACGATTAAGACATGGTCCTAAACAAGTTAAAGACAGCAGTTCCCCGGTCGAAAATACGAGTTCTAATGACTCAAGCTGCAGGCCACATTTTTCAGATGAGGAGGAGTATATAGTGTTCTGCTTTAAAGAAGATGGAGCATTTGAAGTTGTGAAAAACGGCAAAGTGGAAGCGTCGAACGTGAGAGATTGCGCGTCAAGAAACTCGCCGAGGCATGTCAATCGGAAGGTTAGGAATTGCGACGGTCTTAGTTATGGGGAGGATACAAAGGCAGTTGAAAGGCGTAGCAATGAGGAGAGGTTGACTGGAAAAGCTTATGATATTTACCCCACAAATGATGGAAAATCTATCATCTTTGACCAAAAGGACGAGGAAGACGAGGAAACCTACTCCGGTCAAGAACCGCCTCCGAGTAGCAATGTCGAGAATCGTCCGACCGTGTCAGTTGAATCAAGCGATTCAAATCAATCGGACGGCAGCACAGGCTCCTTCGCGTTTCCGGTGTTGGGATGGGAATGGACTGGCAGTCCTGTGCAAATGCCGAAATCGGAAGCCATGGACTTGAGAAAGCACAAGGCTCGCTGCATCGGCTTCCAGTTTCAATGCTGTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.95

Weight (kDa)

6.94

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccII	CGCG	4 cut(s)	45, 205, 422, 722
AciI	CCGC	3 cut(s)	128, 205, 632
AfiI	CCNNNNNNNGG	1 cut(s)	734
AgsI	TTSAA	5 cut(s)	374, 506, 677, 690, 830
AhdI	GACNNNNNGTC	1 cut(s)	753
AluBI	AGCT	2 cut(s)	306, 542
AluI	AGCT	2 cut(s)	306, 542
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	4 cut(s)	6, 306, 705, 810
AspLEI	GCGC	2 cut(s)	45, 422
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	106, 275
AvaII	GGWCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	609
BbvI	GCAGC	4 cut(s)	18, 293, 717, 797
BccI	CCATC	5 cut(s)	33, 181, 356, 560, 732
BceAI	ACGGC	2 cut(s)	403, 718
BcgI	CGANNNNNNTGC	4 cut(s)	431, 465, 788, 822
BciVI	GTATCC	1 cut(s)	484
BcnI	CCSGG	2 cut(s)	106, 275
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	307, 835
BfuAI	ACCTGC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	6 cut(s)	7, 128, 206, 307, 706, 811
BlsI	GCNGC	6 cut(s)	8, 129, 207, 308, 707, 812
Bme1390I	CCNGG	2 cut(s)	106, 275
Bme18I	GGWCC	1 cut(s)	245
BmeRI	GACNNNNNGTC	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	2 cut(s)	106, 275
BmsI	GCATC	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	609
BpuEI	CTTGAG	2 cut(s)	286, 811
BpuMI	CCSGG	2 cut(s)	106, 275
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	4 cut(s)	14, 273, 437, 783
BsaWI	WCCGGW	2 cut(s)	620, 727
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	3 cut(s)	538, 754, 823
Bse3DI	GCAATG	4 cut(s)	129, 187, 523, 652
Bse8I	GATNNNNATC	1 cut(s)	690
BseDI	CCNNGG	4 cut(s)	14, 273, 437, 783
BseGI	GGATG	2 cut(s)	97, 743
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	4 cut(s)	129, 187, 523, 652
BseNI	ACTGG	3 cut(s)	538, 754, 823
BseRI	GAGGAG	3 cut(s)	344, 347, 536
BseXI	GCAGC	4 cut(s)	18, 293, 717, 797
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	4 cut(s)	45, 205, 422, 722
Bsh1285I	CGRYCG	2 cut(s)	279, 666
BshFI	GGCC	1 cut(s)	313
BsiEI	CGRYCG	2 cut(s)	279, 666
BsiSI	CCGG	4 cut(s)	105, 275, 621, 728
BslI	CCNNNNNNNGG	1 cut(s)	734
BsnI	GGCC	1 cut(s)	313
Bsp19I	CCATGG	2 cut(s)	14, 783
BspACI	CCGC	3 cut(s)	128, 205, 632
BspANI	GGCC	1 cut(s)	313
BspFNI	CGCG	4 cut(s)	45, 205, 422, 722
BspLI	GGNNCC	1 cut(s)	715
BspMAI	CTGCAG	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	69
BsrDI	GCAATG	4 cut(s)	129, 187, 523, 652
BsrI	ACTGG	3 cut(s)	538, 754, 823
BssECI	CCNNGG	4 cut(s)	14, 273, 437, 783
BssT1I	CCWWGG	2 cut(s)	14, 783
Bst4CI	ACNGT	2 cut(s)	473, 667
BstC8I	GCNNGC	3 cut(s)	76, 311, 808
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	2 cut(s)	14, 783
BstF5I	GGATG	2 cut(s)	97, 743
BstFNI	CGCG	4 cut(s)	45, 205, 422, 722
BstHHI	GCGC	2 cut(s)	45, 422
BstMCI	CGRYCG	2 cut(s)	279, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 133, 711, 816
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	104, 273
BstSFI	CTRYAG	2 cut(s)	307, 835
BstUI	CGCG	4 cut(s)	45, 205, 422, 722
BstV1I	GCAGC	4 cut(s)	18, 293, 717, 797
BstV2I	GAAGAC	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	2 cut(s)	14, 783
BtsCI	GGATG	2 cut(s)	97, 743
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	76, 311, 808
CfoI	GCGC	2 cut(s)	45, 422
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	2 cut(s)	390, 411
CviAII	CATG	6 cut(s)	15, 63, 148, 242, 443, 784
DdeI	CTNAG	1 cut(s)	476
DraI	TTTAAA	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	753
Eam1105I	GACNNNNNGTC	1 cut(s)	753
Eco130I	CCWWGG	2 cut(s)	14, 783
Eco47I	GGWCC	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	14, 783
ErhI	CCWWGG	2 cut(s)	14, 783
FaeI	CATG	6 cut(s)	18, 66, 151, 245, 446, 787
FatI	CATG	6 cut(s)	14, 62, 147, 241, 442, 783
Fnu4HI	GCNGC	6 cut(s)	7, 128, 206, 307, 706, 811
FokI	GGATG	2 cut(s)	104, 750
Fsp4HI	GCNGC	6 cut(s)	7, 128, 206, 307, 706, 811
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	44, 421
GluI	GCNGC	6 cut(s)	7, 128, 206, 307, 706, 811
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	4 cut(s)	105, 275, 621, 728
HgaI	GACGC	2 cut(s)	390, 411
HhaI	GCGC	2 cut(s)	45, 422
Hin1II	CATG	6 cut(s)	18, 66, 151, 245, 446, 787
Hin6I	GCGC	2 cut(s)	43, 420
HinP1I	GCGC	2 cut(s)	43, 420
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	5 cut(s)	299, 655, 677, 686, 840
HpaII	CCGG	4 cut(s)	105, 275, 621, 728
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	7 cut(s)	325, 453, 639, 663, 700, 778, 845
Hpy188III	TCNNGA	4 cut(s)	155, 426, 626, 652
Hpy8I	GTNNAC	1 cut(s)	531
Hpy99I	CGWCG	3 cut(s)	234, 406, 473
HpyAV	CCTTC	3 cut(s)	43, 448, 727
HpyCH4III	ACNGT	2 cut(s)	473, 667
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	6 cut(s)	6, 78, 122, 309, 763, 813
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 133, 711, 816
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	18, 66, 151, 245, 446, 787
HspAI	GCGC	2 cut(s)	43, 420
LmnI	GCTCC	2 cut(s)	365, 719
Lsp1109I	GCAGC	4 cut(s)	18, 293, 717, 797
LweI	GCATC	1 cut(s)	822
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	218
MboII	GAAGA	2 cut(s)	371, 614
MfeI	CAATTG	1 cut(s)	131
MluCI	AATT	2 cut(s)	131, 463
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	9 cut(s)	322, 325, 432, 481, 514, 519, 592, 601, 645
MseI	TTAA	3 cut(s)	236, 258, 354
MspI	CCGG	4 cut(s)	105, 275, 621, 728
MspR9I	CCNGG	2 cut(s)	106, 275
MunI	CAATTG	1 cut(s)	131
MvnI	CGCG	4 cut(s)	45, 205, 422, 722
MwoI	GCNNNNNNNGC	4 cut(s)	51, 133, 711, 816
NciI	CCSGG	2 cut(s)	106, 275
NcoI	CCATGG	2 cut(s)	14, 783
NlaIII	CATG	6 cut(s)	18, 66, 151, 245, 446, 787
NlaIV	GGNNCC	1 cut(s)	715
NmeAIII	GCCGAG	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PfeI	GAWTC	4 cut(s)	655, 677, 686, 840
PflFI	GACNNNGTC	2 cut(s)	243, 667
PkrI	GCNGC	6 cut(s)	8, 129, 207, 308, 707, 812
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	1 cut(s)	245
PsrI	GAACNNNNNNTAC	2 cut(s)	329, 361
PstI	CTGCAG	1 cut(s)	311
PsyI	GACNNNGTC	2 cut(s)	243, 667
SaqAI	TTAA	3 cut(s)	236, 258, 354
SatI	GCNGC	6 cut(s)	7, 128, 206, 307, 706, 811
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	106, 275
SetI	ASST	7 cut(s)	83, 308, 411, 459, 530, 544, 617
SfaNI	GCATC	1 cut(s)	822
SfcI	CTRYAG	2 cut(s)	307, 835
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	301, 790
SmoI	CTYRAG	2 cut(s)	301, 790
Sse9I	AATT	2 cut(s)	131, 463
SsiI	CCGC	3 cut(s)	128, 205, 632
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	104, 273
StyI	CCWWGG	2 cut(s)	14, 783
TaaI	ACNGT	2 cut(s)	473, 667
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	156, 279, 404, 651
TasI	AATT	2 cut(s)	131, 463
TauI	GCSGC	2 cut(s)	130, 208
TfiI	GAWTC	4 cut(s)	655, 677, 686, 840
Tru1I	TTAA	3 cut(s)	236, 258, 354
Tru9I	TTAA	3 cut(s)	236, 258, 354
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	6, 306, 705, 810
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	51, 111
Tth111I	GACNNNGTC	2 cut(s)	243, 667
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.