AT5G61280

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006512
Physical Location & Seq
Reverse (-)
24643556 .. 24644990
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61280.3

Sequence Viewer

Length: 792 bp
ATGGATAATTTGGTTAAGCAAAGAAGAAGAAGGGTCTCAATCTCTGAGAACATAAAAACGGATTTGCCAATGCTATCAGAATTGGACATAACAGATTACCCAGCATTAAACTGGCTGAAAAACCAATCATATTGGTACGAGAAAAATGACTACTACAACGAGAAAGAGAGTGAATTGGCAGTTTCTGTTGCGGTTGCTGCATTCGTCATTAGATCAATGGAAGAAGCCGATAAACAAAAATCGAAAAGAATAAGAGAAGAAATCAAGAGGTCAAGGACCAAAAAATCCAATCTGGTTATACCTAATACCCAAGTAAAGAGGTTAAGCAAATCATATACACAAGAGGTGAAAATTGGAGAGGAGAGTTTCAGAAAAAAATTGTTGGAGTATCCATCAGAAAACCGTCGGCCACAAGAGATTGGCTCATCCTCCGGAACATCAGGACTTGCTTCAGCGTCAAGTAAAGCAGATTCTTGGGAAAAATCTCAAATCAAGAAAATAAGATTAAGGTATGAGAAAATGAAAGCTGATATTGTGGGTTGGGAGAATGAGAGAAAATTAGCAGCTACACTGTTAATGGAGAAAAGAAAGAGTGAATTGGAGAAGAGAAAAGGGATTAATAATCAGCATTATAAGTCAAAATTAGCAAGGATTCAACTAATAGCTGATGGAGCCAAGAAACAGCTTGAGGAGAAGAGAAGGAGCAAAGAAGCTCAAGTTCATGGAAAAGTAAAGAAAATGAGTCGAACAGGGAAAGTTCCTAATAATTATTTCTGCTTTCGGTGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

263

Amino Acids

30.79

Weight (kDa)

9.93

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 152 - 197 3.9e-09 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AccIII TCCGGA 1 cut(s) 431
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 656
AluBI AGCT 5 cut(s) 527, 566, 665, 685, 713
AluI AGCT 5 cut(s) 527, 566, 665, 685, 713
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 431
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 2 cut(s) 197, 563
AseI ATTAAT 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 358
AvaII GGWCC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 184, 575
BccI CCATC 2 cut(s) 400, 662
BciVI GTATCC 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 2 cut(s) 198, 564
BlsI GCNGC 2 cut(s) 199, 565
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 673
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpuEI CTTGAG 2 cut(s) 699, 707
BsaI GGTCTC 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 431
BseGI GGATG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 374, 704
BseXI GCAGC 2 cut(s) 184, 575
BseYI CCCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 432
BsmAI GTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 431
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 1 cut(s) 191
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 37
BspEI TCCGGA 1 cut(s) 431
BspLI GGNNCC 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 116
BssMI GATC 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 404, 573
Bst6I CTCTTC 2 cut(s) 599, 689
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 197, 671
BstV1I GCAGC 2 cut(s) 184, 575
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 409
BtsCI GGATG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 569
CaiI CAGNNNCTG 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 276
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 722
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 2 cut(s) 599, 689
EarI CTCTTC 2 cut(s) 599, 689
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 435
FaeI CATG 1 cut(s) 725
FaiI YATR 9 cut(s) 53, 89, 130, 299, 334, 336, 513, 633, 723
FatI CATG 1 cut(s) 721
Fnu4HI GCNGC 2 cut(s) 198, 564
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 198, 564
GluI GCNGC 2 cut(s) 198, 564
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 409
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 444
Hin1II CATG 1 cut(s) 725
HinfI GANTC 3 cut(s) 470, 652, 742
HpaII CCGG 1 cut(s) 432
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 4 cut(s) 46, 79, 371, 397
Hpy188III TCNNGA 4 cut(s) 265, 432, 441, 493
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 2 cut(s) 24, 693
HpyCH4III ACNGT 2 cut(s) 404, 573
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 671
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 1 cut(s) 725
Kpn2I TCCGGA 1 cut(s) 431
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 671, 702
LpnPI CCDG 6 cut(s) 97, 114, 278, 426, 445, 735
Lsp1109I GCAGC 2 cut(s) 184, 575
MaeIII GTNAC 1 cut(s) 785
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 6 cut(s) 36, 39, 233, 269, 616, 706
MluCI AATT 9 cut(s) 7, 80, 173, 351, 377, 557, 596, 641, 766
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 6 cut(s) 261, 312, 337, 352, 439, 682
MroI TCCGGA 1 cut(s) 431
MseI TTAA 6 cut(s) 15, 107, 323, 506, 575, 618
MspI CCGG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 197, 671
NdeII GATC 1 cut(s) 212
NlaIII CATG 1 cut(s) 725
NlaIV GGNNCC 1 cut(s) 673
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 470, 652
PkrI GCNGC 2 cut(s) 199, 565
PleI GAGTC 1 cut(s) 750
PpsI GAGTC 1 cut(s) 750
PshBI ATTAAT 1 cut(s) 618
PsiI TTATAA 1 cut(s) 633
PspFI CCCAGC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 673
PspPI GGNCC 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 6 cut(s) 15, 107, 323, 506, 575, 618
SatI GCNGC 2 cut(s) 198, 564
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 1 cut(s) 751
SinI GGWCC 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 686, 714
SmoI CTYRAG 2 cut(s) 686, 714
Sse9I AATT 9 cut(s) 7, 80, 173, 351, 377, 557, 596, 641, 766
SsiI CCGC 1 cut(s) 191
TaaI ACNGT 2 cut(s) 404, 573
TaqI TCGA 2 cut(s) 242, 745
TasI AATT 9 cut(s) 7, 80, 173, 351, 377, 557, 596, 641, 766
TfiI GAWTC 2 cut(s) 470, 652
Tru1I TTAA 6 cut(s) 15, 107, 323, 506, 575, 618
Tru9I TTAA 6 cut(s) 15, 107, 323, 506, 575, 618
TscAI CASTG 1 cut(s) 576
TseI GCWGC 2 cut(s) 197, 563
TspDTI ATGAA 2 cut(s) 536, 710
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 576
VpaK11BI GGWCC 1 cut(s) 276
VspI ATTAAT 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.