Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006512

Physical Location & Seq

Genomic Coordinates Forward (+)

60595905 .. 60606378

Gene Structure 10474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGGACAGCGAGAGATCAAGTCAGTGTTGGTGGGAAAAACTCCCTTGAGGAACTTGGGTTGGATGAGCTTCAGACATTGAAGGCTGCAATGGAGGAGCTCAAGGAGAAAATGGAAATTAAAACCGAAAAGGAAATTCAAGAGGACATGGTAATGCAGTGGAAACCAAAGCAGATGCATGCTCGGGAGAAAGCTCAGATGAAGAAGATTCAGAACCGTCTTGGAAAGAACCTAGTGATTGATCCTGTTTTGGAGGAAGAAAGATACCAAGATGGAAGCTTAAAGCTTACTTGCAGGCCTTCTCGCTATGAAGTCACTCAGCTAACTATGTCAGGGGAATGGTCAACCCCAAAAATTTATATTTCAAAGCCCACCGGAATCAGGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

130

Amino Acids

15.12

Weight (kDa)

8.94

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61280 AT5G61280 AT5G61280
fragaria_vesca	FvH4_5g14350 FvH4_5g14350 FvH4_5g14350
malus_domestica	MD06G1199500.v1.1 MD14G1208100.v1.1
prunus_persica	Prupe.5G200200_v2.0.a1 Prupe.5G200200_v2.0.a1 Prupe.5G200200_v2.0.a1 Prupe.5G200200_v2.0.a1
pyrus_communis	pycom06g17630 pycom14g17180
rosa_chinensis	RchiOBHm_Chr7g0182351
rosa_laevigata	RLG00000005128
rosa_multiflora	Rmu_sc0000003.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271280
rosa_samantha	Rh2AG395400 Rh2CG381900 Rh2DG417200 Rh4AG324600 Rh7AG050300 Rh7CG051600 Rh7DG049500
rosa_wichuraiana	Rw7G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	135, 354
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	82, 140, 366
AluBI	AGCT	6 cut(s)	70, 100, 194, 279, 286, 322
AluI	AGCT	6 cut(s)	70, 100, 194, 279, 286, 322
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	135, 354
AvaI	CYCGRG	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	68, 86
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	209, 332
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	381
BsnI	GGCC	1 cut(s)	298
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	16, 241
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	2 cut(s)	208, 331
BspPI	GGATC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	96
BssMI	GATC	2 cut(s)	16, 241
Bst4CI	ACNGT	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	180, 296
BstDEI	CTNAG	2 cut(s)	195, 318
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	19, 244
BstMBI	GATC	2 cut(s)	16, 241
BstNSI	RCATGY	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	31, 164
Cac8I	GCNNGC	2 cut(s)	180, 296
CviAII	CATG	2 cut(s)	148, 179
CviJI	RGCY	9 cut(s)	70, 86, 100, 194, 279, 286, 298, 322, 370
CviKI_1	RGCY	9 cut(s)	70, 86, 100, 194, 279, 286, 298, 322, 370
DdeI	CTNAG	2 cut(s)	195, 318
DpnI	GATC	2 cut(s)	18, 243
DpnII	GATC	2 cut(s)	16, 241
Ecl136II	GAGCTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	2 cut(s)	151, 182
FaiI	YATR	5 cut(s)	149, 180, 309, 329, 360
FatI	CATG	2 cut(s)	147, 178
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	2 cut(s)	151, 182
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	2 cut(s)	277, 284
HinfI	GANTC	2 cut(s)	208, 378
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	75, 198, 213
Hpy188III	TCNNGA	3 cut(s)	140, 185, 382
Hpy8I	GTNNAC	1 cut(s)	345
HpyAV	CCTTC	2 cut(s)	76, 309
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	89, 157, 178, 294
HpyF3I	CTNAG	2 cut(s)	195, 318
Hsp92II	CATG	2 cut(s)	151, 182
Kzo9I	GATC	2 cut(s)	16, 241
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	5 cut(s)	258, 280, 318, 367, 388
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	2 cut(s)	18, 243
MboI	GATC	2 cut(s)	16, 241
MboII	GAAGA	3 cut(s)	214, 217, 269
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	117, 135, 354
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	4 cut(s)	43, 88, 136, 247
Mph1103I	ATGCAT	1 cut(s)	180
MseI	TTAA	2 cut(s)	120, 281
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	375
NdeII	GATC	2 cut(s)	16, 241
NlaIII	CATG	2 cut(s)	151, 182
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	180
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	208, 378
PkrI	GCNGC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	120, 281
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	16, 241
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	7 cut(s)	72, 102, 196, 234, 281, 288, 324
SfaNI	GCATC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	47, 101
SmoI	CTYRAG	2 cut(s)	47, 101
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	117, 135, 354
SseBI	AGGCCT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	3 cut(s)	117, 135, 354
TfiI	GAWTC	2 cut(s)	208, 378
Tru1I	TTAA	2 cut(s)	120, 281
Tru9I	TTAA	2 cut(s)	120, 281
TscAI	CASTG	2 cut(s)	31, 164
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	215, 324
TspRI	CASTG	2 cut(s)	31, 164
XapI	RAATTY	2 cut(s)	135, 354
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.