Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006512

Physical Location & Seq

Genomic Coordinates Reverse (-)

19235069 .. 19235975

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17180.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGACTGGGCGGCCAAACAAAGAAGCAAGGGATGCTGGTGAAGTTTCAATGAAAGATCAAAGAGCACAGGAGAGTGCTTTTCCATCTAGGTACCCGAATCGTGCATCCTCTTCAAGACCTTCGACTCCTGCAAATGGATACCAAACCCAAAAGGGAAGTTCAGGCAGACGTAATGCTGCGGACACAAAAGCAGATGCTTGGGAGAGAGCTCAGATGAAAAAGATTCAGAAGCGGTATGAGAAAGTGAAGGCTACAATTGTTGCTTGGGAAAATGAGAAGAAAACGAAAGCAAAAGCTAAGATGGAGAGGAGAAAGAGTGAAATTGAGCAGAGAAGAGCAAGAAACATGCAGCATTACCAAATTAAGCAAGCAAGAATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGTGGAAGAGAAACGAAGAAATGAAGAGTCGAAAGTGAAAGAAAAGGTGAAAAGGATTAGGTCAACAGGCAAGGCTCCTACTACATGTTTCTGCTTCACTTGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

172

Amino Acids

19.67

Weight (kDa)

10.35

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61280 AT5G61280 AT5G61280
fragaria_vesca	FvH4_5g14350 FvH4_5g14350 FvH4_5g14350
malus_domestica	MD06G1199500.v1.1 MD14G1208100.v1.1
prunus_persica	Prupe.5G200200_v2.0.a1 Prupe.5G200200_v2.0.a1 Prupe.5G200200_v2.0.a1 Prupe.5G200200_v2.0.a1
pyrus_communis	pycom06g17630 pycom14g17180
rosa_chinensis	RchiOBHm_Chr7g0182351
rosa_laevigata	RLG00000005128
rosa_multiflora	Rmu_sc0000003.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271280
rosa_samantha	Rh2AG395400 Rh2CG381900 Rh2DG417200 Rh4AG324600 Rh7AG050300 Rh7CG051600 Rh7DG049500
rosa_wichuraiana	Rw7G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AciI	CCGC	3 cut(s)	10, 179, 232
AcoI	YGGCCR	1 cut(s)	11
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	48, 114
AluBI	AGCT	2 cut(s)	209, 296
AluI	AGCT	2 cut(s)	209, 296
Alw21I	GWGCWC	2 cut(s)	67, 211
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	176, 349
Asp718I	GGTACC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	50, 466
BaeGI	GKGCMC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	67, 211
BbvI	GCAGC	2 cut(s)	163, 361
BccI	CCATC	2 cut(s)	91, 295
BciVI	GTATCC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	87, 514
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	3 cut(s)	11, 177, 350
BlsI	GCNGC	3 cut(s)	12, 178, 351
BmiI	GGNNCC	2 cut(s)	92, 483
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	3 cut(s)	22, 113, 184
BmuI	ACTGGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	37, 104
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	322, 408
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	163, 361
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	67, 211
BslI	CCNNNNNNNGG	1 cut(s)	134
BsnI	GGCC	1 cut(s)	13
Bsp1286I	GDGCHC	3 cut(s)	67, 211, 406
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	3 cut(s)	10, 179, 232
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	92, 483
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	55
Bst6I	CTCTTC	4 cut(s)	115, 328, 408, 426
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	210, 297
BstF5I	GGATG	2 cut(s)	37, 104
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 395
BstNSI	RCATGY	2 cut(s)	349, 495
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	163, 361
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	37, 104
Cac8I	GCNNGC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	346, 492
CviJI	RGCY	5 cut(s)	13, 209, 251, 296, 482
CviKI_1	RGCY	5 cut(s)	13, 209, 251, 296, 482
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	210, 297
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	4 cut(s)	115, 328, 408, 426
EarI	CTCTTC	4 cut(s)	115, 328, 408, 426
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	2 cut(s)	349, 495
FaiI	YATR	3 cut(s)	237, 347, 493
FatI	CATG	2 cut(s)	345, 491
Fnu4HI	GCNGC	3 cut(s)	11, 177, 350
FokI	GGATG	2 cut(s)	44, 91
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	11, 177, 350
FspBI	CTAG	2 cut(s)	87, 514
GluI	GCNGC	3 cut(s)	11, 177, 350
HaeIII	GGCC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	349, 495
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	4 cut(s)	97, 124, 223, 434
HphI	GGTGA	2 cut(s)	50, 466
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	2 cut(s)	213, 228
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	129, 241
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	104, 131, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 395
HpyF3I	CTNAG	2 cut(s)	210, 297
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	349, 495
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	55
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	395, 487
LpnPI	CCDG	7 cut(s)	21, 53, 141, 147, 375, 395, 459
Lsp1109I	GCAGC	2 cut(s)	163, 361
LweI	GCATC	3 cut(s)	22, 113, 184
MaeI	CTAG	2 cut(s)	87, 514
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	6 cut(s)	102, 289, 345, 425, 435, 443
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	3 cut(s)	67, 211, 406
MluCI	AATT	4 cut(s)	255, 321, 360, 375
MlyI	GAGTC	2 cut(s)	118, 443
MnlI	CCTC	3 cut(s)	118, 300, 386
MseI	TTAA	1 cut(s)	363
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	32, 395
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	349, 495
NlaIV	GGNNCC	2 cut(s)	92, 483
NspI	RCATGY	2 cut(s)	349, 495
PciI	ACATGT	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	97, 223
PkrI	GCNGC	3 cut(s)	12, 178, 351
PleI	GAGTC	2 cut(s)	118, 442
PpsI	GAGTC	2 cut(s)	118, 442
PscI	ACATGT	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	92, 483
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	11, 177, 350
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	118, 443
SduI	GDGCHC	3 cut(s)	67, 211, 406
SetI	ASST	7 cut(s)	92, 121, 172, 211, 298, 456, 470
SfaNI	GCATC	3 cut(s)	22, 113, 184
Sse9I	AATT	4 cut(s)	255, 321, 360, 375
SsiI	CCGC	3 cut(s)	10, 179, 232
SspMI	CTAG	2 cut(s)	87, 514
SstI	GAGCTC	1 cut(s)	211
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	122, 437
TasI	AATT	4 cut(s)	255, 321, 360, 375
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	97, 223
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	2 cut(s)	176, 349
TspDTI	ATGAA	3 cut(s)	65, 230, 444
XceI	RCATGY	2 cut(s)	349, 495
XspI	CTAG	2 cut(s)	87, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.