pycom06g17630

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006512
Physical Location & Seq
Reverse (-)
21544319 .. 21545331
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17630.1

Sequence Viewer

Length: 672 bp
ATGAGTCATTATTCTGATGCACAAGATATCGAGCTTGCAACTGCCGTTGCATCAGCTGCGTTCGCCATTCACTCCAATGAAGAACCTAAATTACAGTATCGAAAAGGGACGAGGGAAAGCATTCCGATCCCAAGGACCAAGAGTTTGCAGGACATGAGGACTGGGCGACCAAACAAGGAAACAAGGAATAATGTAGATGAAGTTTCAAGGAAAAAGTCAATGGATCAAAGAGAACTTCCATCTAGTTACCCTAATCGGGCATCCTCTTCAAGACCTTCGACTCCTGGAAATGGATACCAGAACCAAAGGGGAAGTTCAGTCGGACGTAATGTTGTGGAAACAAAACCAGATGCTTGGGAGAGTGGCCAGATGAAGAAGATTCAGAAGCGGTATGAGAAAGTGAAGGCTACAATTGTTGCTTGGGAAAATGAGAAGAAAATGCAAGCAAAAGCTAAGATGGAGAGGAGAAAGAATGAAATTGAGCAGAGAAGAGCAAGAAACATGCAGCATTACCAAATTAAGCAAGCAAGAATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGCGGAAGAGAAACGAAGAAATGAAGAGTTGAAAGTGAAAGAAAAGGCGAAAAGGATTAGGTCAACAGGCAAGGCTCCTGCTACATGTTTCTGCTTCACTTGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

224

Amino Acids

25.56

Weight (kDa)

10.11

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 112 - 215 1.3e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 388, 566
AclWI GGATC 2 cut(s) 121, 231
AcoI YGGCCR 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 256, 290
AflIII ACRYGT 1 cut(s) 647
AgsI TTSAA 3 cut(s) 207, 270, 595
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 34, 56, 452
AluI AGCT 3 cut(s) 34, 56, 452
AlwI GGATC 2 cut(s) 121, 231
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 56, 505
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 135
AvaII GGWCC 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 562
BalI TGGCCA 1 cut(s) 366
BbvI GCAGC 2 cut(s) 43, 517
BccI CCATC 2 cut(s) 247, 451
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 287
BfaI CTAG 2 cut(s) 243, 670
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 2 cut(s) 57, 506
BlsI GCNGC 2 cut(s) 58, 507
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 4 cut(s) 7, 59, 269, 340
BmuI ACTGGG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 290
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 2 cut(s) 256, 290
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 478, 564
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 2 cut(s) 43, 517
BshFI GGCC 1 cut(s) 366
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 256, 290
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 2 cut(s) 126, 223
BspACI CCGC 2 cut(s) 388, 566
BspANI GGCC 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 639
BspPI GGATC 2 cut(s) 121, 231
BspQI GCTCTTC 1 cut(s) 484
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 126, 223
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 4 cut(s) 271, 484, 564, 582
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 36, 444, 525
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 2 cut(s) 129, 226
BstMBI GATC 2 cut(s) 126, 223
BstMWI GCNNNNNNNGC 3 cut(s) 56, 62, 551
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 2 cut(s) 505, 651
BstSCI CCNGG 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 562
BstV1I GCAGC 2 cut(s) 43, 517
BstXI CCANNNNNNTGG 1 cut(s) 354
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 1 cut(s) 260
Cac8I GCNNGC 3 cut(s) 36, 444, 525
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 3 cut(s) 154, 502, 648
CviJI RGCY 6 cut(s) 34, 56, 366, 407, 452, 638
CviKI_1 RGCY 6 cut(s) 34, 56, 366, 407, 452, 638
DdeI CTNAG 1 cut(s) 453
DpnI GATC 2 cut(s) 128, 225
DpnII GATC 2 cut(s) 126, 223
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 4 cut(s) 271, 484, 564, 582
EarI CTCTTC 4 cut(s) 271, 484, 564, 582
Eco130I CCWWGG 1 cut(s) 131
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 283
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 157, 505, 651
FaiI YATR 4 cut(s) 155, 393, 503, 649
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 153, 501, 647
Fnu4HI GCNGC 2 cut(s) 57, 506
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 57, 506
FspBI CTAG 2 cut(s) 243, 670
GluI GCNGC 2 cut(s) 57, 506
HaeIII GGCC 1 cut(s) 366
Hin1II CATG 3 cut(s) 157, 505, 651
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HinfI GANTC 3 cut(s) 4, 280, 379
Hpy166II GTNNAC 1 cut(s) 627
Hpy188I TCNGA 4 cut(s) 16, 126, 323, 384
Hpy188III TCNNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 627
HpyAV CCTTC 2 cut(s) 285, 397
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 6 cut(s) 20, 38, 50, 148, 442, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 62, 551
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 3 cut(s) 157, 505, 651
Kzo9I GATC 2 cut(s) 126, 223
LguI GCTCTTC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 551, 643
Lsp1109I GCAGC 2 cut(s) 43, 517
LweI GCATC 4 cut(s) 7, 59, 269, 340
MaeI CTAG 2 cut(s) 243, 670
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 245, 665
MalI GATC 2 cut(s) 128, 225
MboI GATC 2 cut(s) 126, 223
MboII GAAGA 9 cut(s) 92, 258, 385, 388, 445, 501, 581, 591, 599
MfeI CAATTG 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 562
MlsI TGGCCA 1 cut(s) 366
MluCI AATT 5 cut(s) 89, 411, 477, 516, 531
MluNI TGGCCA 1 cut(s) 366
MlyI GAGTC 2 cut(s) 13, 274
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 5 cut(s) 105, 150, 274, 456, 542
Mox20I TGGCCA 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 120
MscI TGGCCA 1 cut(s) 366
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 3 cut(s) 56, 62, 551
NdeII GATC 2 cut(s) 126, 223
NlaIII CATG 3 cut(s) 157, 505, 651
NlaIV GGNNCC 1 cut(s) 639
NspI RCATGY 2 cut(s) 505, 651
PciI ACATGT 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 484
PctI GAATGC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 379
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 2 cut(s) 58, 507
PleI GAGTC 2 cut(s) 12, 274
PpsI GAGTC 2 cut(s) 12, 274
PscI ACATGT 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 135
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PvuII CAGCTG 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 484
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 57, 506
Sau3AI GATC 2 cut(s) 126, 223
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 2 cut(s) 13, 274
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 562
SetI ASST 7 cut(s) 36, 58, 88, 277, 328, 454, 626
SfaNI GCATC 4 cut(s) 7, 59, 269, 340
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 5 cut(s) 89, 411, 477, 516, 531
SsiI CCGC 2 cut(s) 388, 566
SspMI CTAG 2 cut(s) 243, 670
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 328
TaqI TCGA 3 cut(s) 30, 100, 278
TasI AATT 5 cut(s) 89, 411, 477, 516, 531
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TseI GCWGC 2 cut(s) 56, 505
TspDTI ATGAA 5 cut(s) 93, 213, 386, 489, 600
VpaK11BI GGWCC 1 cut(s) 135
XceI RCATGY 2 cut(s) 505, 651
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 243, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.