Rroxscaffold_3G00271280

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006512
Physical Location & Seq
Forward (+)
63664270 .. 63666301
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271280.1

Sequence Viewer

Length: 567 bp
ATGAATGGGAGGCCGAGTTCTAGTGCAGCAACTCGGCGATTATCAAACAAAGGAGCAAATAATGGTGGTGGAGCTTCAATGAAAAGGCCAATGGGGCAGGACCAAAAAACATTGGACTTAGAGAAAGCTTTTCCATCCAGGTATCCAAATCGTGGAAACTCTATAAGGCCTCCAACTCCTGCAGACGGAAATCAAAACCGAAAGGGAAATTCAAGAGGACATGGTAATGCAGTGGAAACCAAAGCAGATGCTTGGGAGAAAGCTCAGATGAAGAAGATTCAGAACCGGTATGAAAAAGTGAAAGTTGCAATTCTTGCTTGGGAAAATGAGAAGAAGATGCAAGTGAAAATAAAGATGGAGAGGAGAAAGAGAGAAATGGAGCAAAGACGAGCAAGAGATATGCAACACTACCAAGTTAAGCAAGAAAGGATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGTGGAACAGAAAAGAAGAAATGAAGAGTCCAGAGTTAAAGAAAAGGTGAAAAGGATTAGAGCAACAGGAAACGTTCCTGTTACATGCTTCTGCTTCACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

188

Amino Acids

21.51

Weight (kDa)

10.6

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 77 - 181 1.3e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AclI AACGTT 1 cut(s) 534
AcsI RAATTY 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 152, 185
AgeI ACCGGT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 78, 213
AjnI CCWGG 1 cut(s) 137
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 3 cut(s) 74, 128, 263
AluI AGCT 3 cut(s) 74, 128, 263
AoxI GGCC 3 cut(s) 11, 86, 167
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 208
AsiGI ACCGGT 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 142, 349
BciT130I CCWGG 1 cut(s) 139
BciVI GTATCC 1 cut(s) 153
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 238, 327
BsaWI WCCGGW 1 cut(s) 285
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 185
Bse118I RCCGGY 1 cut(s) 285
BseBI CCWGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 152, 185
BseMII CTCAG 1 cut(s) 278
BseRI GAGGAG 2 cut(s) 376, 462
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 3 cut(s) 13, 88, 169
BshTI ACCGGT 1 cut(s) 285
BsiSI CCGG 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 152, 185
BsnI GGCC 3 cut(s) 13, 88, 169
Bsp1286I GDGCHC 1 cut(s) 460
BspANI GGCC 3 cut(s) 13, 88, 169
BspCNI CTCAG 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 118, 264
BstF5I GGATG 1 cut(s) 134
BstMWI GCNNNNNNNGC 3 cut(s) 94, 314, 449
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 38
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 3 cut(s) 13, 88, 169
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 100
CspAI ACCGGT 1 cut(s) 285
CviAII CATG 2 cut(s) 221, 546
CviJI RGCY 6 cut(s) 13, 74, 88, 128, 169, 263
CviKI_1 RGCY 6 cut(s) 13, 74, 88, 128, 169, 263
DdeI CTNAG 2 cut(s) 118, 264
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco147I AGGCCT 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 137
FaeI CATG 2 cut(s) 224, 549
FaiI YATR 5 cut(s) 164, 222, 291, 401, 547
FatI CATG 2 cut(s) 220, 545
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 21
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 3 cut(s) 13, 88, 169
HapII CCGG 1 cut(s) 286
Hin1II CATG 2 cut(s) 224, 549
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 2 cut(s) 277, 488
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 520
Hpy188I TCNGA 2 cut(s) 267, 282
Hpy188III TCNNGA 2 cut(s) 213, 492
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 6 cut(s) 26, 182, 230, 308, 340, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 314, 449
HpyF3I CTNAG 2 cut(s) 118, 264
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 2 cut(s) 224, 549
LmnI GCTCC 4 cut(s) 53, 71, 379, 449
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 238, 327
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 541
MboII GAAGA 6 cut(s) 283, 286, 343, 346, 489, 497
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 2 cut(s) 208, 309
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 5 cut(s) 3, 180, 209, 354, 440
MseI TTAA 2 cut(s) 417, 498
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 94, 314, 449
NlaIII CATG 2 cut(s) 224, 549
NmeAIII GCCGAG 2 cut(s) 13, 39
NspI RCATGY 1 cut(s) 549
PceI AGGCCT 1 cut(s) 169
PfeI GAWTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 285
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Psp1406I AACGTT 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 2 cut(s) 417, 498
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 460
SetI ASST 6 cut(s) 76, 130, 143, 265, 510, 537
SfaNI GCATC 2 cut(s) 238, 327
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 2 cut(s) 208, 309
SseBI AGGCCT 1 cut(s) 169
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 137
TaiI ACGT 1 cut(s) 537
TasI AATT 2 cut(s) 208, 309
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 2 cut(s) 417, 498
Tru9I TTAA 2 cut(s) 417, 498
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 17, 95, 284, 306, 498
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 549
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.