Rh7CG051600

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006512
Physical Location & Seq
Reverse (-)
3775188 .. 3776173
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG051600.1

Sequence Viewer

Length: 714 bp
ATGGATTATGCTCCACAAGAGAGCGAGTTTGCAACTGCGGTTGCAGCAGCTGCATTTGCCATTCACTCAATGGAACAAGCTGAATTGCAGTATCGAAAAGAGAGGAGGGAAAGCCTTGAAATCACAAGGACCAATACTTTGCAGGATCACATGAATGGGAGGCCGAGTTCTAGTGCAGCAACTCGGCGATTATCAAACAAAGGAGCAAACAATGGTGGAGCTTCAATGAAAAGACCAATGGGGCAGGACCAAAAAACATTGGACTTAGAGAAAGCTTTTCCATCCAGGTATCCAAATCGTGGAAACTCTATAAGGCCTCCAACTCCTGCAGACGGAAATCAAAACCGAAAGGGAAATTCAAGAGGACTTGGTAATGCAGTGGAAACCAAAGCAGATGCTTGGGAGAAAGCTCAGATGAAGAAGATTCAGAACCGGTATGAAAAAGTGAAAGCTGCAATTCTTGCTTGGGAAAATAAGAAGAAGATGCAAGTGAAAATAAAGATGGAGAGGAGAAAGAGAGAAATGGAGCAAAGACGAGCAAGAGATATGCAACACTACCAAGTTAAGCAAGAAAGGATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGTGGAACAGAAAAGAAGAAATGAAGAGTCCAGAGTTAAAGAAAAGGTGAAAAGGATTAGAGCAACAGGAAAAGTTCCTGTTACATGCTTCTGCTTCACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

237

Amino Acids

27.15

Weight (kDa)

10.26

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 126 - 230 1.7e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 299, 332
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 3 cut(s) 119, 225, 360
AjnI CCWGG 1 cut(s) 284
AloI GAACNNNNNNTCC 2 cut(s) 151, 183
AluBI AGCT 6 cut(s) 50, 80, 221, 275, 410, 452
AluI AGCT 6 cut(s) 50, 80, 221, 275, 410, 452
AlwI GGATC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 161, 314
ApeKI GCWGC 5 cut(s) 44, 47, 50, 176, 452
ApoI RAATTY 1 cut(s) 355
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AsiGI ACCGGT 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 129, 247
AsuHPI GGTGA 1 cut(s) 667
AvaII GGWCC 2 cut(s) 129, 247
BaeGI GKGCMC 1 cut(s) 607
BbvI GCAGC 5 cut(s) 37, 56, 59, 188, 439
BccI CCATC 2 cut(s) 289, 496
BciT130I CCWGG 1 cut(s) 286
BciVI GTATCC 1 cut(s) 300
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 300
BisI GCNGC 5 cut(s) 45, 48, 51, 177, 453
BlsI GCNGC 5 cut(s) 46, 49, 52, 178, 454
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 2 cut(s) 129, 247
BmgT120I GGNCC 2 cut(s) 129, 247
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 2 cut(s) 385, 474
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 332
Bse118I RCCGGY 1 cut(s) 432
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 299, 332
BseMII CTCAG 1 cut(s) 425
BseRI GAGGAG 3 cut(s) 118, 523, 609
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 5 cut(s) 37, 56, 59, 188, 439
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 2 cut(s) 163, 316
BshTI ACCGGT 1 cut(s) 432
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 299, 332
BsnI GGCC 2 cut(s) 163, 316
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 38
BspANI GGCC 2 cut(s) 163, 316
BspCNI CTCAG 1 cut(s) 424
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 432
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 627
BstAPI GCANNNNNTGC 2 cut(s) 50, 461
BstDEI CTNAG 2 cut(s) 265, 411
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 5 cut(s) 44, 50, 56, 461, 596
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 5 cut(s) 37, 56, 59, 188, 439
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 2 cut(s) 163, 316
BtsCI GGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 129, 247
CspAI ACCGGT 1 cut(s) 432
CviAII CATG 2 cut(s) 151, 693
CviJI RGCY 9 cut(s) 50, 80, 114, 163, 221, 275, 316, 410, 452
CviKI_1 RGCY 9 cut(s) 50, 80, 114, 163, 221, 275, 316, 410, 452
DdeI CTNAG 2 cut(s) 265, 411
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 129, 247
EcoRII CCWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 154, 696
FaiI YATR 6 cut(s) 9, 152, 311, 438, 548, 694
FatI CATG 2 cut(s) 150, 692
Fnu4HI GCNGC 5 cut(s) 45, 48, 51, 177, 453
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 5 cut(s) 45, 48, 51, 177, 453
FspBI CTAG 1 cut(s) 171
GluI GCNGC 5 cut(s) 45, 48, 51, 177, 453
HaeIII GGCC 2 cut(s) 163, 316
HapII CCGG 1 cut(s) 433
Hin1II CATG 2 cut(s) 154, 696
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 2 cut(s) 424, 635
HpaII CCGG 1 cut(s) 433
HphI GGTGA 1 cut(s) 667
Hpy188I TCNGA 2 cut(s) 414, 429
Hpy188III TCNNGA 2 cut(s) 360, 639
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 50, 56, 461, 596
HpyF3I CTNAG 2 cut(s) 265, 411
Hsp92II CATG 2 cut(s) 154, 696
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 5 cut(s) 16, 203, 218, 526, 596
Lsp1109I GCAGC 5 cut(s) 37, 56, 59, 188, 439
LweI GCATC 2 cut(s) 385, 474
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 688
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 6 cut(s) 430, 433, 490, 493, 636, 644
MhlI GDGCHC 1 cut(s) 607
MluCI AATT 3 cut(s) 83, 355, 456
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 7 cut(s) 96, 99, 153, 327, 356, 501, 587
MseI TTAA 2 cut(s) 564, 645
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 5 cut(s) 44, 50, 56, 461, 596
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 154, 696
NmeAIII GCCGAG 2 cut(s) 163, 189
NspI RCATGY 1 cut(s) 696
PceI AGGCCT 1 cut(s) 316
PfeI GAWTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 5 cut(s) 46, 49, 52, 178, 454
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 2 cut(s) 129, 247
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 564, 645
SatI GCNGC 5 cut(s) 45, 48, 51, 177, 453
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 129, 247
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 607
SetI ASST 8 cut(s) 52, 82, 223, 277, 290, 412, 454, 657
SfaNI GCATC 2 cut(s) 385, 474
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 2 cut(s) 129, 247
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 3 cut(s) 83, 355, 456
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 171
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 284
TaqI TCGA 1 cut(s) 94
TasI AATT 3 cut(s) 83, 355, 456
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 2 cut(s) 564, 645
Tru9I TTAA 2 cut(s) 564, 645
TscAI CASTG 1 cut(s) 384
TseI GCWGC 5 cut(s) 44, 47, 50, 176, 452
TspDTI ATGAA 5 cut(s) 167, 242, 431, 453, 645
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 384
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 129, 247
XapI RAATTY 1 cut(s) 355
XceI RCATGY 1 cut(s) 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.