MD06G1199500.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0006512
Physical Location & Seq
Reverse (-)
33314531 .. 33316168
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1199500.v1.1.491

Sequence Viewer

Length: 669 bp
ATGAGTCATTATACTGATGCACAAGATATCGAGCTTGCAACAGCCGTTGCATCAGCTGCGTTCGCCATTCACTCCAATGAAGAACCTAAATTACAGTATCGAAAAGGGACGAGGGAAAGCATTCCGATCCCAAGGACCAAGAGTTTGCAGGACATGACGACTGGGCGACCAAACAAGGAAACAAGGAATAATGATGAAGTTTCAAGGAAAAAGTCAATGGATCAAAGAGAACTTCCATCTAGGTACCCTAATCGGGCATCCTCTTCAAGACCTTCGACTCCTGGAAATGGATACCAGAACCAAAGGGGAAGTTCAGTCGGACGTAATGATGTGGAAACAAAACCAGATGCTTGGGAGAGAGCTCAGATGAAGAAGATTCAGAGGCGGTATGAGAAAGTGAAGGCTACAATTGTTGCTTGGGAAAATGAGAAGAAAATGCAAGCAAAAGCTAAGATGGAGAGGAGAAAGAATGAAATTGAGCAGAGAAGAGCAAGAAACATGCAGCATTACCAAATTAAGCAAGCAAGAATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGCGGAAGAGAAACGAAGAAATGAAGAGTCGAAAGTGAAAGAAAAGGCGAAAAGGATTAGGTCAACAGGCAAGGCTCCTGCTACATGCTTCTGCTTCACTTGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

223

Amino Acids

25.59

Weight (kDa)

10.14

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 111 - 214 1.8e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AciI CCGC 2 cut(s) 385, 563
AclWI GGATC 2 cut(s) 121, 228
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 253, 287
AgsI TTSAA 2 cut(s) 204, 267
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 4 cut(s) 34, 56, 362, 449
AluI AGCT 4 cut(s) 34, 56, 362, 449
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 2 cut(s) 121, 228
ApeKI GCWGC 2 cut(s) 56, 502
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
Asp700I GAANNNNTTC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 135
AvaII GGWCC 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 43, 514
BccI CCATC 2 cut(s) 244, 448
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 284
BfaI CTAG 2 cut(s) 240, 667
BfuI GTATCC 1 cut(s) 284
BisI GCNGC 2 cut(s) 57, 503
BlsI GCNGC 2 cut(s) 58, 504
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 245, 636
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 4 cut(s) 7, 59, 266, 337
BmuI ACTGGG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 287
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 253, 287
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 475, 561
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 2 cut(s) 43, 514
BshNI GGYRCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 364
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 253, 287
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 364, 559
Bsp143I GATC 2 cut(s) 126, 220
BspACI CCGC 2 cut(s) 385, 563
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 245, 636
BspPI GGATC 2 cut(s) 121, 228
BspQI GCTCTTC 1 cut(s) 481
BspT107I GGYRCC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 126, 220
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 4 cut(s) 268, 481, 561, 579
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 36, 441, 522
BstDEI CTNAG 2 cut(s) 363, 450
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 2 cut(s) 129, 223
BstMBI GATC 2 cut(s) 126, 220
BstMWI GCNNNNNNNGC 3 cut(s) 56, 62, 548
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 2 cut(s) 502, 648
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 559
BstV1I GCAGC 2 cut(s) 43, 514
BstXI CCANNNNNNTGG 1 cut(s) 351
BsuI GTATCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 36, 441, 522
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 244
CviAII CATG 3 cut(s) 154, 499, 645
CviJI RGCY 7 cut(s) 34, 44, 56, 362, 404, 449, 635
CviKI_1 RGCY 7 cut(s) 34, 44, 56, 362, 404, 449, 635
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 363, 450
DpnI GATC 2 cut(s) 128, 222
DpnII GATC 2 cut(s) 126, 220
Eam1104I CTCTTC 4 cut(s) 268, 481, 561, 579
EarI CTCTTC 4 cut(s) 268, 481, 561, 579
Ecl136II GAGCTC 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 364
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 157, 502, 648
FaiI YATR 5 cut(s) 12, 155, 390, 500, 646
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 153, 498, 644
Fnu4HI GCNGC 2 cut(s) 57, 503
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 57, 503
FspBI CTAG 2 cut(s) 240, 667
GluI GCNGC 2 cut(s) 57, 503
Hin1II CATG 3 cut(s) 157, 502, 648
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 4 cut(s) 4, 277, 376, 587
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 4 cut(s) 126, 320, 366, 381
Hpy188III TCNNGA 1 cut(s) 267
Hpy8I GTNNAC 1 cut(s) 624
HpyAV CCTTC 2 cut(s) 282, 394
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 6 cut(s) 20, 38, 50, 148, 439, 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 62, 548
HpyF3I CTNAG 2 cut(s) 363, 450
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 3 cut(s) 157, 502, 648
KpnI GGTACC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 126, 220
LguI GCTCTTC 1 cut(s) 481
LmnI GCTCC 2 cut(s) 548, 640
Lsp1109I GCAGC 2 cut(s) 43, 514
LweI GCATC 4 cut(s) 7, 59, 266, 337
MaeI CTAG 2 cut(s) 240, 667
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 662
MalI GATC 2 cut(s) 128, 222
MboI GATC 2 cut(s) 126, 220
MboII GAAGA 9 cut(s) 92, 255, 382, 385, 442, 498, 578, 588, 596
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 364, 559
MluCI AATT 5 cut(s) 89, 408, 474, 513, 528
MlyI GAGTC 3 cut(s) 13, 271, 596
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 5 cut(s) 105, 271, 375, 453, 539
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 56, 62, 548
NdeII GATC 2 cut(s) 126, 220
NlaIII CATG 3 cut(s) 157, 502, 648
NlaIV GGNNCC 2 cut(s) 245, 636
NspI RCATGY 2 cut(s) 502, 648
PciSI GCTCTTC 1 cut(s) 481
PctI GAATGC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 2 cut(s) 58, 504
PleI GAGTC 3 cut(s) 12, 271, 595
PpsI GAGTC 3 cut(s) 12, 271, 595
Psp124BI GAGCTC 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 245, 636
PspPI GGNCC 1 cut(s) 135
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 2 cut(s) 57, 503
Sau3AI GATC 2 cut(s) 126, 220
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 3 cut(s) 13, 271, 596
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 2 cut(s) 364, 559
SetI ASST 9 cut(s) 36, 58, 88, 245, 274, 325, 364, 451, 623
SfaNI GCATC 4 cut(s) 7, 59, 266, 337
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 5 cut(s) 89, 408, 474, 513, 528
SsiI CCGC 2 cut(s) 385, 563
SspMI CTAG 2 cut(s) 240, 667
SstI GAGCTC 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 325
TaqI TCGA 4 cut(s) 30, 100, 275, 590
TasI AATT 5 cut(s) 89, 408, 474, 513, 528
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TseI GCWGC 2 cut(s) 56, 502
TspDTI ATGAA 5 cut(s) 93, 210, 383, 486, 597
VpaK11BI GGWCC 1 cut(s) 135
XceI RCATGY 2 cut(s) 502, 648
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 240, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.