Rmu_sc0000003.1_g000002

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000003.1
OG0006512
Physical Location & Seq
Forward (+)
8930 .. 9915
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000003.1_g000002.1.cds

Sequence Viewer

Length: 714 bp
atggattatgctccacaagagagcgagtttgcaactgcggttgcagcagctgcatttgccattcactcaatggaacaagctgaattgcagtatcaaaaagagaggagggaaagccttgaaatcacaaggaccaaaactttgcaggatcacatgaatgggagaccgagttctagtgcagcaactcggcgattatcaaacaaaggagcaaataatggtggagcttcaatgaaaaggccaatggggcaggaccaaaaaacattggacttagagaaagcttttccatccaggtatccaaatcgtggaaactctataaggcctccaactcctgcagacggaaatcaaaaccgaaagggaaattcaagaggacatggtaatgcagtggaaaccaaagcagatgcttgggagaaagctcagatgaagaagattcagaaccggtatgaaaaagtgaaatctgcaattcttgcttgggaaaataagaagaagatgcaagtgaaaataaagacggagaggagaaagagagaaatggagcaaagacgagcaagagatatgcaacactaccaagttaagcaagaaaggattgaccagatagcaggaggagcaagggcacaagtggaacagaaaagaaggaatgaagagtccagagttaaagaaaaggtgaaaaggattagagcaacaggaaaagttcctgttacatgcttctgcttcacttgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

237

Amino Acids

27.15

Weight (kDa)

10.22

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 299, 332
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 3 cut(s) 119, 225, 360
AjnI CCWGG 1 cut(s) 284
AloI GAACNNNNNNTCC 2 cut(s) 151, 183
AluBI AGCT 5 cut(s) 50, 80, 221, 275, 410
AluI AGCT 5 cut(s) 50, 80, 221, 275, 410
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 233, 314
ApeKI GCWGC 4 cut(s) 44, 47, 50, 176
ApoI RAATTY 1 cut(s) 355
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AsiGI ACCGGT 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 129, 247
AsuHPI GGTGA 1 cut(s) 667
AvaII GGWCC 2 cut(s) 129, 247
BaeGI GKGCMC 1 cut(s) 607
BbvI GCAGC 4 cut(s) 37, 56, 59, 188
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 286
BciVI GTATCC 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 241
BisI GCNGC 4 cut(s) 45, 48, 51, 177
BlsI GCNGC 4 cut(s) 46, 49, 52, 178
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 2 cut(s) 129, 247
BmgT120I GGNCC 2 cut(s) 129, 247
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 2 cut(s) 385, 474
BsaI GGTCTC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 332
Bse118I RCCGGY 1 cut(s) 432
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 299, 332
BseMII CTCAG 1 cut(s) 425
BseRI GAGGAG 3 cut(s) 118, 523, 609
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 4 cut(s) 37, 56, 59, 188
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 2 cut(s) 235, 316
BshTI ACCGGT 1 cut(s) 432
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 299, 332
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 235, 316
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 38
BspANI GGCC 2 cut(s) 235, 316
BspCNI CTCAG 1 cut(s) 424
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 432
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 627
BstAPI GCANNNNNTGC 2 cut(s) 50, 461
BstDEI CTNAG 2 cut(s) 265, 411
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 241, 461, 596
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 4 cut(s) 37, 56, 59, 188
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 2 cut(s) 235, 316
BtsCI GGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 129, 247
CspAI ACCGGT 1 cut(s) 432
CviAII CATG 3 cut(s) 151, 368, 693
CviJI RGCY 8 cut(s) 50, 80, 114, 221, 235, 275, 316, 410
CviKI_1 RGCY 8 cut(s) 50, 80, 114, 221, 235, 275, 316, 410
DdeI CTNAG 2 cut(s) 265, 411
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 129, 247
EcoRII CCWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 154, 371, 696
FaiI YATR 7 cut(s) 9, 152, 311, 369, 438, 548, 694
FatI CATG 3 cut(s) 150, 367, 692
Fnu4HI GCNGC 4 cut(s) 45, 48, 51, 177
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 4 cut(s) 45, 48, 51, 177
FspBI CTAG 1 cut(s) 171
GluI GCNGC 4 cut(s) 45, 48, 51, 177
HaeIII GGCC 2 cut(s) 235, 316
HapII CCGG 1 cut(s) 433
Hin1II CATG 3 cut(s) 154, 371, 696
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 2 cut(s) 424, 635
HpaII CCGG 1 cut(s) 433
HphI GGTGA 1 cut(s) 667
Hpy188I TCNGA 2 cut(s) 414, 429
Hpy188III TCNNGA 2 cut(s) 360, 639
HpyAV CCTTC 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 241, 461, 596
HpyF3I CTNAG 2 cut(s) 265, 411
Hsp92II CATG 3 cut(s) 154, 371, 696
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 5 cut(s) 16, 203, 218, 526, 596
Lsp1109I GCAGC 4 cut(s) 37, 56, 59, 188
LweI GCATC 2 cut(s) 385, 474
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 688
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 5 cut(s) 430, 433, 490, 493, 644
MhlI GDGCHC 1 cut(s) 607
MluCI AATT 3 cut(s) 83, 355, 456
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 6 cut(s) 96, 99, 327, 356, 501, 587
MseI TTAA 2 cut(s) 564, 645
MslI CAYNNNNRTG 2 cut(s) 153, 372
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 241, 461, 596
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 154, 371, 696
NmeAIII GCCGAG 1 cut(s) 163
NspI RCATGY 1 cut(s) 696
PceI AGGCCT 1 cut(s) 316
PfeI GAWTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 4 cut(s) 46, 49, 52, 178
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 2 cut(s) 129, 247
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 153, 372
SaqAI TTAA 2 cut(s) 564, 645
SatI GCNGC 4 cut(s) 45, 48, 51, 177
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 129, 247
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 607
SetI ASST 7 cut(s) 52, 82, 223, 277, 290, 412, 657
SfaNI GCATC 2 cut(s) 385, 474
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 2 cut(s) 129, 247
SmiMI CAYNNNNRTG 2 cut(s) 153, 372
Sse9I AATT 3 cut(s) 83, 355, 456
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 171
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 284
TaqII GACCGA 1 cut(s) 178
TasI AATT 3 cut(s) 83, 355, 456
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 2 cut(s) 564, 645
Tru9I TTAA 2 cut(s) 564, 645
TscAI CASTG 1 cut(s) 384
TseI GCWGC 4 cut(s) 44, 47, 50, 176
TspDTI ATGAA 5 cut(s) 167, 242, 431, 453, 645
TspGWI ACGGA 2 cut(s) 348, 518
TspRI CASTG 1 cut(s) 384
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 129, 247
XapI RAATTY 1 cut(s) 355
XceI RCATGY 1 cut(s) 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.