Rh7AG050300

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006512
Physical Location & Seq
Reverse (-)
3477804 .. 3478789
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG050300.1

Sequence Viewer

Length: 717 bp
ATGGATTATGCTCCACAAGAGAGTGAGTTTGCAACTGCGGTTGCAGCAGCTGCATTTGCCATTCACTCAATGGAACAAGCTGAATTGCAGTATCAAAAAGAGAGGAGGGAAAGCCTTGAAATCACAAGGACCAAAACTTTGCAGGATCACATGAATGGGAGACCGAGTTCTAGTGCAGCAACTCGGCGATTATCAAACAAAGGAGCAAATAATGGTGGTGGAGCTTCAATGAAAAGGCCAATGGGGCAGGACCAAAAAACATTGGACTTAGAGAAAGCTTTTCCATCCAGGTATCCAAATCGTGGAAACTCTATAAGGCCTCCAACTCCTGCAGACGGAAATCAAAACCGAAAGGGAAATTCAAGAGGACATGGTAATGCAGTGGAAACCAAAGCAGATGCTTGGGAGAAAGCTCAGATGAAGAAGATTCAGAACCGGTATGAAAAAGTGAAAGCTGCAATTCTTGCTTGGGAAAATAAGAAGAAGATGCAAGTGAAAATAAAGATAGAGAGGAGAAAGAGAGAAATGGAGCAAAGACGAGCAAGAGATATGCAACACTACCAAGTTAAGCAAGAAAGGATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGTGGAACAGAAAAGAAGGAATGAAGAGTCCAGAGTTAAAGAAAAGGTGAAAAGGATTAGAGCAACAGGAAAAGTTCCTGTTACATGCTTCTGCTTCACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

238

Amino Acids

27.2

Weight (kDa)

10.22

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 127 - 231 4.3e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 302, 335
AgeI ACCGGT 1 cut(s) 435
AgsI TTSAA 3 cut(s) 119, 228, 363
AjnI CCWGG 1 cut(s) 287
AloI GAACNNNNNNTCC 2 cut(s) 151, 183
AluBI AGCT 6 cut(s) 50, 80, 224, 278, 413, 455
AluI AGCT 6 cut(s) 50, 80, 224, 278, 413, 455
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 236, 317
ApeKI GCWGC 5 cut(s) 44, 47, 50, 176, 455
ApoI RAATTY 1 cut(s) 358
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AsiGI ACCGGT 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 129, 250
AsuHPI GGTGA 1 cut(s) 670
AvaII GGWCC 2 cut(s) 129, 250
BaeGI GKGCMC 1 cut(s) 610
BbvI GCAGC 5 cut(s) 37, 56, 59, 188, 442
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 303
BglI GCCNNNNNGGC 1 cut(s) 244
BisI GCNGC 5 cut(s) 45, 48, 51, 177, 456
BlsI GCNGC 5 cut(s) 46, 49, 52, 178, 457
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 2 cut(s) 129, 250
BmgT120I GGNCC 2 cut(s) 129, 250
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 2 cut(s) 388, 477
BsaI GGTCTC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 335
Bse118I RCCGGY 1 cut(s) 435
BseBI CCWGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 302, 335
BseMII CTCAG 1 cut(s) 428
BseRI GAGGAG 3 cut(s) 118, 526, 612
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 5 cut(s) 37, 56, 59, 188, 442
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 2 cut(s) 238, 319
BshTI ACCGGT 1 cut(s) 435
BsiSI CCGG 1 cut(s) 436
BslI CCNNNNNNNGG 2 cut(s) 302, 335
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 238, 319
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 38
BspANI GGCC 2 cut(s) 238, 319
BspCNI CTCAG 1 cut(s) 427
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 435
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 630
BstAPI GCANNNNNTGC 2 cut(s) 50, 464
BstDEI CTNAG 2 cut(s) 268, 414
BstF5I GGATG 1 cut(s) 284
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 244, 464, 599
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 610
BstV1I GCAGC 5 cut(s) 37, 56, 59, 188, 442
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 238, 319
BtsCI GGATG 1 cut(s) 284
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 129, 250
CspAI ACCGGT 1 cut(s) 435
CviAII CATG 3 cut(s) 151, 371, 696
CviJI RGCY 9 cut(s) 50, 80, 114, 224, 238, 278, 319, 413, 455
CviKI_1 RGCY 9 cut(s) 50, 80, 114, 224, 238, 278, 319, 413, 455
DdeI CTNAG 2 cut(s) 268, 414
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco147I AGGCCT 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 129, 250
EcoRII CCWGG 1 cut(s) 287
FaeI CATG 3 cut(s) 154, 374, 699
FaiI YATR 7 cut(s) 9, 152, 314, 372, 441, 551, 697
FatI CATG 3 cut(s) 150, 370, 695
Fnu4HI GCNGC 5 cut(s) 45, 48, 51, 177, 456
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 5 cut(s) 45, 48, 51, 177, 456
FspBI CTAG 1 cut(s) 171
GluI GCNGC 5 cut(s) 45, 48, 51, 177, 456
HaeIII GGCC 2 cut(s) 238, 319
HapII CCGG 1 cut(s) 436
Hin1II CATG 3 cut(s) 154, 374, 699
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 2 cut(s) 427, 638
HpaII CCGG 1 cut(s) 436
HphI GGTGA 1 cut(s) 670
Hpy188I TCNGA 2 cut(s) 417, 432
Hpy188III TCNNGA 2 cut(s) 363, 642
HpyAV CCTTC 1 cut(s) 621
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 244, 464, 599
HpyF3I CTNAG 2 cut(s) 268, 414
Hsp92II CATG 3 cut(s) 154, 374, 699
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 5 cut(s) 16, 203, 221, 529, 599
Lsp1109I GCAGC 5 cut(s) 37, 56, 59, 188, 442
LweI GCATC 2 cut(s) 388, 477
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 691
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 5 cut(s) 433, 436, 493, 496, 647
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 3 cut(s) 83, 358, 459
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 6 cut(s) 96, 99, 330, 359, 504, 590
MseI TTAA 2 cut(s) 567, 648
MslI CAYNNNNRTG 2 cut(s) 153, 375
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 244, 464, 599
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 154, 374, 699
NmeAIII GCCGAG 1 cut(s) 163
NspI RCATGY 1 cut(s) 699
PceI AGGCCT 1 cut(s) 319
PfeI GAWTC 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 435
PkrI GCNGC 5 cut(s) 46, 49, 52, 178, 457
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 2 cut(s) 129, 250
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 153, 375
SaqAI TTAA 2 cut(s) 567, 648
SatI GCNGC 5 cut(s) 45, 48, 51, 177, 456
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 129, 250
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 610
SetI ASST 8 cut(s) 52, 82, 226, 280, 293, 415, 457, 660
SfaNI GCATC 2 cut(s) 388, 477
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 129, 250
SmiMI CAYNNNNRTG 2 cut(s) 153, 375
Sse9I AATT 3 cut(s) 83, 358, 459
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 171
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 287
TaqII GACCGA 1 cut(s) 178
TasI AATT 3 cut(s) 83, 358, 459
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 567, 648
Tru9I TTAA 2 cut(s) 567, 648
TscAI CASTG 1 cut(s) 387
TseI GCWGC 5 cut(s) 44, 47, 50, 176, 455
TspDTI ATGAA 5 cut(s) 167, 245, 434, 456, 648
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 387
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 129, 250
XapI RAATTY 1 cut(s) 358
XceI RCATGY 1 cut(s) 699
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.