MD14G1208100.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0006512
Physical Location & Seq
Reverse (-)
29487845 .. 29489351
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1208100.v1.1.491

Sequence Viewer

Length: 672 bp
ATGAGTCATTATTCTGATGCACAAGATGTCGAGTCTGCAACTGCGGTTGCAGCAGCTGCCCTTTCCATTCACTCGAATGAAGAAGCTAAATTACAGTATCAAAAAGGGACGAGGGAAAGCATTCCGATCTCAAGGACCAAGACTCTGCAGGATCTGATGACTGGGCGGCCAAACAAAGAAGCAAGGGATGCTGGTGAAGTTTCAATGAAAGATCAAAGAGCACAGGAGAGTGCTTTTCCATCTAGGTACCCGAATCGTGCATCCTCTTCAAGACCTTCGACTCCTGCAAATGGACACCAAAACCAAAAGGGAAGTCCAGGCAGACGTAATGCTGCGGACGCAAAAGCAGATGCTTGGGAGAGAGCTCAGATGAAAAAGATTCAGAGGCGGTATGAGAAAGTGAAGGCTACAATTGATGCTTGGGAAAATGAGAAGAAAATGAAAGCAAAAGCTAAGATGGAGAGGAGAAAGAGTGAAATTGAGCAGAGAAGAGCAAGAAACATGCAGCATTACCAAATTAAGCAAGCAAGAATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGTGGAAGAGAAACGAAGAAATGAAGAGTCGAAAGTCAAACAAAAGGCGAAAAGGATTAGTTCAACAGGCAAGGCTCCTACTACATGTTTCTGCTTCACTTGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

224

Amino Acids

25.26

Weight (kDa)

10.06

Isoelectric Point (pI)

62.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 112 - 215 1.9e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 4 cut(s) 44, 166, 335, 388
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 167
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 647
AgsI TTSAA 3 cut(s) 204, 270, 627
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 4 cut(s) 56, 86, 365, 452
AluI AGCT 4 cut(s) 56, 86, 365, 452
Alw21I GWGCWC 2 cut(s) 223, 367
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 2 cut(s) 56, 154
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 5 cut(s) 50, 53, 56, 332, 505
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
Asp700I GAANNNNTTC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 562
BanI GGYRCC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 367
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
Bbv12I GWGCWC 2 cut(s) 223, 367
BbvI GCAGC 5 cut(s) 43, 62, 65, 319, 517
BccI CCATC 2 cut(s) 247, 451
BciT130I CCWGG 1 cut(s) 318
BfaI CTAG 2 cut(s) 243, 670
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 6 cut(s) 51, 54, 57, 167, 333, 506
BlsI GCNGC 6 cut(s) 52, 55, 58, 168, 334, 507
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 248, 639
BmrFI CCNGG 1 cut(s) 318
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 5 cut(s) 7, 178, 269, 340, 406
BmuI ACTGGG 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 193, 260
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 478, 564
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 5 cut(s) 43, 62, 65, 319, 517
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 223, 367
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 3 cut(s) 223, 367, 562
Bsp143I GATC 3 cut(s) 126, 151, 211
BspACI CCGC 4 cut(s) 44, 166, 335, 388
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 248, 639
BspMAI CTGCAG 1 cut(s) 150
BspPI GGATC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 484
BspT107I GGYRCC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 166
BssMI GATC 3 cut(s) 126, 151, 211
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 4 cut(s) 271, 484, 564, 582
BstAPI GCANNNNNTGC 2 cut(s) 56, 188
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 366, 453
BstF5I GGATG 2 cut(s) 193, 260
BstKTI GATC 3 cut(s) 129, 154, 214
BstMBI GATC 3 cut(s) 126, 151, 211
BstMWI GCNNNNNNNGC 5 cut(s) 50, 56, 188, 338, 551
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 2 cut(s) 505, 651
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 562
BstV1I GCAGC 5 cut(s) 43, 62, 65, 319, 517
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 193, 260
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 2 cut(s) 56, 154
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 502, 648
CviJI RGCY 7 cut(s) 56, 86, 169, 365, 407, 452, 638
CviKI_1 RGCY 7 cut(s) 56, 86, 169, 365, 407, 452, 638
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 366, 453
DpnI GATC 3 cut(s) 128, 153, 213
DpnII GATC 3 cut(s) 126, 151, 211
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 4 cut(s) 271, 484, 564, 582
EarI CTCTTC 4 cut(s) 271, 484, 564, 582
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 367
FaeI CATG 2 cut(s) 505, 651
FaiI YATR 3 cut(s) 393, 503, 649
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 501, 647
Fnu4HI GCNGC 6 cut(s) 51, 54, 57, 167, 333, 506
FokI GGATG 2 cut(s) 200, 247
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 6 cut(s) 51, 54, 57, 167, 333, 506
FspBI CTAG 2 cut(s) 243, 670
GluI GCNGC 6 cut(s) 51, 54, 57, 167, 333, 506
HaeIII GGCC 1 cut(s) 169
HgaI GACGC 1 cut(s) 347
Hin1II CATG 2 cut(s) 505, 651
HinfI GANTC 7 cut(s) 4, 32, 142, 253, 280, 379, 590
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 5 cut(s) 16, 126, 156, 369, 384
Hpy188III TCNNGA 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 285, 397
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 7 cut(s) 20, 38, 50, 148, 260, 287, 505
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 56, 188, 338, 551
HpyF3I CTNAG 2 cut(s) 366, 453
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 2 cut(s) 505, 651
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 3 cut(s) 126, 151, 211
LguI GCTCTTC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 551, 643
Lsp1109I GCAGC 5 cut(s) 43, 62, 65, 319, 517
LweI GCATC 5 cut(s) 7, 178, 269, 340, 406
MaeI CTAG 2 cut(s) 243, 670
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 665
MalI GATC 3 cut(s) 128, 153, 213
MboI GATC 3 cut(s) 126, 151, 211
MboII GAAGA 7 cut(s) 92, 258, 445, 501, 581, 591, 599
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 3 cut(s) 223, 367, 562
MluCI AATT 5 cut(s) 89, 411, 477, 516, 531
MlyI GAGTC 5 cut(s) 13, 41, 136, 274, 599
MnlI CCTC 5 cut(s) 105, 274, 378, 456, 542
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 5 cut(s) 50, 56, 188, 338, 551
NdeII GATC 3 cut(s) 126, 151, 211
NlaIII CATG 2 cut(s) 505, 651
NlaIV GGNNCC 2 cut(s) 248, 639
NspI RCATGY 2 cut(s) 505, 651
PciI ACATGT 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 484
PctI GAATGC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 253, 379
PkrI GCNGC 6 cut(s) 52, 55, 58, 168, 334, 507
PleI GAGTC 5 cut(s) 12, 40, 136, 274, 598
PpsI GAGTC 5 cut(s) 12, 40, 136, 274, 598
PscI ACATGT 1 cut(s) 647
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 248, 639
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 150
PstNI CAGNNNCTG 2 cut(s) 56, 154
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 484
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 6 cut(s) 51, 54, 57, 167, 333, 506
Sau3AI GATC 3 cut(s) 126, 151, 211
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 5 cut(s) 13, 41, 136, 274, 599
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 3 cut(s) 223, 367, 562
SetI ASST 7 cut(s) 58, 88, 248, 277, 328, 367, 454
SfaNI GCATC 5 cut(s) 7, 178, 269, 340, 406
SfcI CTRYAG 1 cut(s) 146
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 5 cut(s) 89, 411, 477, 516, 531
SsiI CCGC 4 cut(s) 44, 166, 335, 388
SspMI CTAG 2 cut(s) 243, 670
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 328
TaqI TCGA 4 cut(s) 30, 74, 278, 593
TasI AATT 5 cut(s) 89, 411, 477, 516, 531
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 2 cut(s) 253, 379
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TseI GCWGC 5 cut(s) 50, 53, 56, 332, 505
TspDTI ATGAA 5 cut(s) 93, 221, 386, 455, 600
VpaK11BI GGWCC 1 cut(s) 135
XceI RCATGY 2 cut(s) 505, 651
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 243, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.