Rh2CG381900

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006512
Physical Location & Seq
Forward (+)
52118275 .. 52126058
7784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG381900.1

Sequence Viewer

Length: 330 bp
ATGAGGACAGCGAGAGATCAAGTCAGTGTTGGTGGGAAAAACTCCCTTGAGGAACTTGGGTTGGATGAGCTTCAGACATTGAAGGCTGCAATGGAGGAGCTCAAGGAGAAAATGGAAATTAAAACCGAAAAGGAAATTCAAGAGGACATGGTAATGCAGTGGAAACCAAAGCAGATGCATGCTCGGGAGAAAGCTCAGATGAAGAAGATTCAGAACCGGTATGAAAAAGTAAAAGCTGCAATTCTTGCTTGGGACAATGAGAAGAAGATGCAAGTGGCTGCAATATTTGAGAATGGAAACAGCAAAGATATGCCAGATATTCCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

109

Amino Acids

12.66

Weight (kDa)

5.94

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 56
AgeI ACCGGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 82, 140
AluBI AGCT 4 cut(s) 70, 100, 194, 236
AluI AGCT 4 cut(s) 70, 100, 194, 236
Alw21I GWGCWC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 86, 236, 278
ApoI RAATTY 1 cut(s) 135
AsiGI ACCGGT 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 183
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 73, 223, 265
BisI GCNGC 3 cut(s) 87, 237, 279
BlsI GCNGC 3 cut(s) 88, 238, 280
BmeT110I CYCGRG 1 cut(s) 183
BmsI GCATC 2 cut(s) 165, 258
BpuEI CTTGAG 2 cut(s) 68, 86
BsaWI WCCGGW 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 96
BseGI GGATG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 3 cut(s) 73, 223, 265
BshTI ACCGGT 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 73, 223, 265
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 31, 164
Cac8I GCNNGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 216
CspAI ACCGGT 1 cut(s) 216
CviAII CATG 2 cut(s) 148, 179
CviJI RGCY 6 cut(s) 70, 86, 100, 194, 236, 278
CviKI_1 RGCY 6 cut(s) 70, 86, 100, 194, 236, 278
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 2 cut(s) 151, 182
FaiI YATR 4 cut(s) 149, 180, 222, 311
FaqI GGGAC 1 cut(s) 266
FatI CATG 2 cut(s) 147, 178
Fnu4HI GCNGC 3 cut(s) 87, 237, 279
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 87, 237, 279
GluI GCNGC 3 cut(s) 87, 237, 279
HapII CCGG 1 cut(s) 217
Hin1II CATG 2 cut(s) 151, 182
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 75, 198, 213
Hpy188III TCNNGA 3 cut(s) 140, 185, 323
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 6 cut(s) 89, 157, 178, 239, 271, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 2 cut(s) 151, 182
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 230
Lsp1109I GCAGC 3 cut(s) 73, 223, 265
LweI GCATC 2 cut(s) 165, 258
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 4 cut(s) 214, 217, 274, 277
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 117, 135, 240
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 43, 88, 136
Mph1103I ATGCAT 1 cut(s) 180
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 151, 182
NsiI ATGCAT 1 cut(s) 180
NspI RCATGY 1 cut(s) 182
PaeI GCATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 208
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 3 cut(s) 88, 238, 280
Psp124BI GAGCTC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 152
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 3 cut(s) 87, 237, 279
Sau3AI GATC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 102
SetI ASST 4 cut(s) 72, 102, 196, 238
SfaNI GCATC 2 cut(s) 165, 258
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 47, 101
SmoI CTYRAG 2 cut(s) 47, 101
SphI GCATGC 1 cut(s) 182
Sse9I AATT 3 cut(s) 117, 135, 240
SspI AATATT 1 cut(s) 285
SstI GAGCTC 1 cut(s) 102
TasI AATT 3 cut(s) 117, 135, 240
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 31, 164
TseI GCWGC 3 cut(s) 86, 236, 278
TspDTI ATGAA 2 cut(s) 215, 237
TspRI CASTG 2 cut(s) 31, 164
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.