FvH4_5g14350

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006512
Physical Location & Seq
Forward (+)
8122634 .. 8124606
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14350.t3

Sequence Viewer

Length: 720 bp
ATGGATTATGATTCACAAGAGAGTGAGTTTGCAACCGCTGTCGCAGCAGCTGCATTTGCCATTCACTCAATGGAACAAGCTGAATTGCAGTACCAAAAAGAGAGGAGGAAAAGCCTTGAAACCACAAGGACCAATACTTTGCCGGATACAAAGATAAGGCCTAGTTCTGGGGCAGCAACTAGGCGATTATCAAACAAAGGAGCAAATAGTACTAGTGGTGGAGCTTCAATGAAAATGCCAATGGGGCAGGACCAAAGAGCATTGGACTTGGAGAGTGTTTTTCCATCTAGGTATGCAAATCGTGGAAACTCTATAAGGCCTTCAACTTCTGCAGACGGAAATCAAAGCCGAAAAGGAAATTCAAGAGGACATGGCAATGCAGTGGAAACCAAAGCAGATGCTTGGGAGAAAGCTGAGATGAAGAAGATTCAGAATCGGTATGAAAAAGTGAAAGCTGCAATTCTTGCTTGGGAAAATGAAAAGAAGATGCAAGTGAAATTAAAGATGGAGAGGAGAAAGAGAGAAATGGAGCAAAGAAGAGCAATAAACATGCAACACTACCAAGTTAAGCAAGAAAGGATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGTGGAAGTGAAAAGAAGAAATGAAGAGTCCAAGGTTAAAGAAAAGGCAAAAAGAATTAGAGCAACTGGCAAAGTTCCTGTTACATGCTTCTGCTTCACTTGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

240

Amino Acids

27.1

Weight (kDa)

10.0

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 127 - 231 4.4e-29 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 92, 211
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 4 cut(s) 119, 228, 324, 363
AhlI ACTAGT 1 cut(s) 212
AluBI AGCT 5 cut(s) 50, 80, 224, 413, 455
AluI AGCT 5 cut(s) 50, 80, 224, 413, 455
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 158, 317
ApeKI GCWGC 5 cut(s) 44, 47, 50, 173, 455
ApoI RAATTY 1 cut(s) 358
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AspS9I GGNCC 2 cut(s) 129, 250
AvaII GGWCC 2 cut(s) 129, 250
BaeGI GKGCMC 1 cut(s) 610
BbvI GCAGC 5 cut(s) 37, 56, 59, 185, 442
BccI CCATC 2 cut(s) 292, 499
BciVI GTATCC 1 cut(s) 139
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 5 cut(s) 162, 180, 213, 288, 718
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 244
BisI GCNGC 5 cut(s) 45, 48, 51, 174, 456
BlsI GCNGC 5 cut(s) 46, 49, 52, 175, 457
BmcAI AGTACT 1 cut(s) 211
Bme18I GGWCC 2 cut(s) 129, 250
BmgT120I GGNCC 2 cut(s) 129, 250
BmsI GCATC 2 cut(s) 388, 477
BsaJI CCNNGG 1 cut(s) 642
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 3 cut(s) 118, 526, 612
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 5 cut(s) 37, 56, 59, 185, 442
BshFI GGCC 2 cut(s) 160, 319
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 2 cut(s) 160, 319
Bsp1286I GDGCHC 1 cut(s) 610
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 160, 319
BspCNI CTCAG 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 682
BssECI CCNNGG 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 642
Bst6I CTCTTC 2 cut(s) 532, 630
BstAPI GCANNNNNTGC 2 cut(s) 50, 464
BstDEI CTNAG 1 cut(s) 414
BstMWI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 244, 464, 599
BstNSI RCATGY 2 cut(s) 553, 699
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 610
BstV1I GCAGC 5 cut(s) 37, 56, 59, 185, 442
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 160, 319
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 129, 250
Csp6I GTAC 2 cut(s) 91, 210
CviAII CATG 3 cut(s) 371, 550, 696
CviJI RGCY 9 cut(s) 50, 80, 114, 160, 224, 319, 348, 413, 455
CviKI_1 RGCY 9 cut(s) 50, 80, 114, 160, 224, 319, 348, 413, 455
CviQI GTAC 2 cut(s) 91, 210
DdeI CTNAG 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 532, 630
EarI CTCTTC 2 cut(s) 532, 630
Eco130I CCWWGG 1 cut(s) 642
Eco147I AGGCCT 2 cut(s) 160, 319
Eco47I GGWCC 2 cut(s) 129, 250
EcoT14I CCWWGG 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 3 cut(s) 374, 553, 699
FaiI YATR 7 cut(s) 9, 294, 314, 372, 441, 551, 697
FatI CATG 3 cut(s) 370, 549, 695
Fnu4HI GCNGC 5 cut(s) 45, 48, 51, 174, 456
Fsp4HI GCNGC 5 cut(s) 45, 48, 51, 174, 456
FspBI CTAG 5 cut(s) 162, 180, 213, 288, 718
GluI GCNGC 5 cut(s) 45, 48, 51, 174, 456
HaeIII GGCC 2 cut(s) 160, 319
HapII CCGG 1 cut(s) 143
Hin1II CATG 3 cut(s) 374, 553, 699
HinfI GANTC 4 cut(s) 11, 427, 433, 638
HpaII CCGG 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 1 cut(s) 363
HpyAV CCTTC 1 cut(s) 330
HpyCH4V TGCA 9 cut(s) 32, 53, 88, 296, 332, 380, 458, 490, 553
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 244, 464, 599
HpyF3I CTNAG 1 cut(s) 414
Hsp92II CATG 3 cut(s) 374, 553, 699
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 4 cut(s) 200, 221, 529, 599
LpnPI CCDG 7 cut(s) 153, 156, 233, 579, 599, 663, 702
Lsp1109I GCAGC 5 cut(s) 37, 56, 59, 185, 442
LweI GCATC 2 cut(s) 388, 477
MaeI CTAG 5 cut(s) 162, 180, 213, 288, 718
MaeIII GTNAC 2 cut(s) 691, 713
MboII GAAGA 6 cut(s) 433, 436, 496, 549, 639, 647
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 5 cut(s) 83, 358, 459, 497, 666
MlyI GAGTC 1 cut(s) 647
MnlI CCTC 5 cut(s) 96, 99, 359, 504, 590
MseI TTAA 3 cut(s) 500, 567, 648
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 2 cut(s) 38, 50
MspI CCGG 1 cut(s) 143
MwoI GCNNNNNNNGC 6 cut(s) 44, 50, 56, 244, 464, 599
NlaIII CATG 3 cut(s) 374, 553, 699
NspI RCATGY 2 cut(s) 553, 699
PceI AGGCCT 2 cut(s) 160, 319
PciSI GCTCTTC 1 cut(s) 532
PfeI GAWTC 3 cut(s) 11, 427, 433
PkrI GCNGC 5 cut(s) 46, 49, 52, 175, 457
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PspPI GGNCC 2 cut(s) 129, 250
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 92, 211
RsaNI GTAC 2 cut(s) 91, 210
RseI CAYNNNNRTG 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 3 cut(s) 500, 567, 648
SatI GCNGC 5 cut(s) 45, 48, 51, 174, 456
Sau96I GGNCC 2 cut(s) 129, 250
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 647
SduI GDGCHC 1 cut(s) 610
SetI ASST 7 cut(s) 52, 82, 226, 293, 415, 457, 648
SfaNI GCATC 2 cut(s) 388, 477
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 129, 250
SmiMI CAYNNNNRTG 1 cut(s) 375
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 5 cut(s) 83, 358, 459, 497, 666
SseBI AGGCCT 2 cut(s) 160, 319
SsiI CCGC 1 cut(s) 36
SspMI CTAG 5 cut(s) 162, 180, 213, 288, 718
StuI AGGCCT 2 cut(s) 160, 319
StyI CCWWGG 1 cut(s) 642
TasI AATT 5 cut(s) 83, 358, 459, 497, 666
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 3 cut(s) 11, 427, 433
Tru1I TTAA 3 cut(s) 500, 567, 648
Tru9I TTAA 3 cut(s) 500, 567, 648
TscAI CASTG 1 cut(s) 387
TseI GCWGC 5 cut(s) 44, 47, 50, 173, 455
TspDTI ATGAA 5 cut(s) 245, 434, 456, 492, 648
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 387
VpaK11BI GGWCC 2 cut(s) 129, 250
XapI RAATTY 1 cut(s) 358
XceI RCATGY 2 cut(s) 553, 699
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 5 cut(s) 162, 180, 213, 288, 718
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.