AT5G62740

Band 7 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008213
Physical Location & Seq
Forward (+)
25200838 .. 25202839
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62740.1

Sequence Viewer

Length: 861 bp
ATGGGGAATTTGTTTTGTTGTGTGCAAGTGGATCAATCAACGGTAGCGATAAAGGAAACATTCGGGAAATTCGAAGATGTTCTTGAGCCTGGTTGCCATTTTCTTCCATGGTGTCTTGGTAGTCAAGTTGCTGGTTACCTCTCTCTAAGGGTTCAGCAATTGGACGTTCGTTGCGAGACAAAGACTAAGGACAATGTGTTTGTTAATGTTGTTGCATCGATTCAGTACCGTGCTTTAGCTAATAAGGCAAATGATGCGTACTACAAGCTCAGTAACACAAGGGGTCAGATTCAAGCTTATGTGTTTGATGTTATTAGAGCGAGTGTCCCGAAGTTGCTTCTTGATGATGTCTTTGAGCAGAAGAATGATATTGCGAAAGCTGTTGAAGAGGAGCTCGAGAAGGCAATGTCGGCTTACGGTTATGAGATTGTGCAAACTCTCATTGTTGATATCGAGCCTGATGAACATGTCAAACGGGCCATGAACGAAATCAACGCTGCTGCAAGGATGAGATTGGCTGCAAACGAAAAGGCAGAGGCAGAGAAAATCCTACAGATTAAGAGAGCTGAAGGTGAAGCTGAGTCCAAGTACCTCTCTGGTCTTGGTATCGCCCGTCAGAGGCAGGCGATTGTCGATGGATTACGCGACAGTGTTTTGGGTTTCGCTGTGAATGTCCCTGGGACAACTGCTAAAGATGTGATGGACATGGTGCTAGTTACACAGTACTTTGACACAATGAAGGAGATTGGTGCTAGCTCCAAGTCGTCTGCCGTGTTCATACCTCATGGACCAGGAGCGGTTCGTGATGTGGCTTCTCAGATTAGAGATGGCCTTCTTCAAGGCTCGTCCGCAAACCTGTGA

Protein Analysis

286

Amino Acids

31.43

Weight (kDa)

5.29

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 182 1.1e-29 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 797
AccII CGCG 1 cut(s) 645
AciI CCGC 2 cut(s) 797, 849
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 2 cut(s) 7, 68
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 4 cut(s) 227, 260, 590, 725
AfiI CCNNNNNNNGG 1 cut(s) 618
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 3 cut(s) 293, 386, 839
AjnI CCWGG 3 cut(s) 88, 676, 790
AluBI AGCT 8 cut(s) 239, 268, 296, 380, 394, 566, 578, 756
AluI AGCT 8 cut(s) 239, 268, 296, 380, 394, 566, 578, 756
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 2 cut(s) 477, 829
ApeKI GCWGC 3 cut(s) 497, 500, 518
ApoI RAATTY 2 cut(s) 7, 68
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp700I GAANNNNTTC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 477, 788
AsuHPI GGTGA 1 cut(s) 584
AsuII TTCGAA 1 cut(s) 72
AsuNHI GCTAGC 1 cut(s) 752
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 788
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 484, 487, 505
BccI CCATC 3 cut(s) 629, 694, 821
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 3 cut(s) 90, 678, 792
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 713, 753
BfmI CTRYAG 1 cut(s) 551
BisI GCNGC 3 cut(s) 498, 501, 519
BlsI GCNGC 3 cut(s) 499, 502, 520
BmcAI AGTACT 1 cut(s) 725
Bme1390I CCNGG 3 cut(s) 90, 678, 792
Bme18I GGWCC 1 cut(s) 788
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 477, 788
BmrFI CCNGG 3 cut(s) 90, 678, 792
BmsI GCATC 2 cut(s) 224, 244
BmtI GCTAGC 1 cut(s) 756
Bpu14I TTCGAA 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 107, 676, 677
Bsc4I CCNNNNNNNGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 3 cut(s) 90, 678, 792
BseCI ATCGAT 1 cut(s) 218
BseDI CCNNGG 3 cut(s) 107, 676, 677
BseGI GGATG 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 618
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 283, 570, 830
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 3 cut(s) 484, 487, 505
Bsh1236I CGCG 1 cut(s) 645
BshFI GGCC 2 cut(s) 479, 831
BshVI ATCGAT 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 395
BslFI GGGAC 3 cut(s) 311, 659, 694
BslI CCNNNNNNNGG 1 cut(s) 618
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 3 cut(s) 311, 659, 694
BsnI GGCC 2 cut(s) 479, 831
BsoBI CYCGRG 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 2 cut(s) 797, 849
BspANI GGCC 2 cut(s) 479, 831
BspCNI CTCAG 3 cut(s) 282, 571, 829
BspDI ATCGAT 1 cut(s) 218
BspFNI CGCG 1 cut(s) 645
BspOI GCTAGC 1 cut(s) 756
BspPI GGATC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 411
BssECI CCNNGG 3 cut(s) 107, 676, 677
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 3 cut(s) 90, 678, 792
Bst4CI ACNGT 5 cut(s) 43, 230, 419, 650, 723
Bst6I CTCTTC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 624, 754
BstDEI CTNAG 5 cut(s) 146, 186, 269, 579, 816
BstDSI CCRYGG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 134
BstF5I GGATG 1 cut(s) 513
BstFNI CGCG 1 cut(s) 645
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 3 cut(s) 245, 254, 410
BstNI CCWGG 3 cut(s) 90, 678, 792
BstNSI RCATGY 1 cut(s) 470
BstPI GGTNACC 1 cut(s) 134
BstSCI CCNGG 3 cut(s) 88, 676, 790
BstSFI CTRYAG 1 cut(s) 551
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 3 cut(s) 484, 487, 505
Bsu15I ATCGAT 1 cut(s) 218
BsuRI GGCC 2 cut(s) 479, 831
BsuTUI ATCGAT 1 cut(s) 218
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 655
Cac8I GCNNGC 2 cut(s) 624, 754
Cfr13I GGNCC 2 cut(s) 477, 788
ClaI ATCGAT 1 cut(s) 218
Csp6I GTAC 4 cut(s) 226, 259, 589, 724
CviAII CATG 5 cut(s) 108, 467, 481, 706, 785
CviQI GTAC 4 cut(s) 226, 259, 589, 724
DdeI CTNAG 5 cut(s) 146, 186, 269, 579, 816
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 396
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 788
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 395
Eco91I GGTNACC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 88, 676, 790
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 5 cut(s) 111, 470, 484, 709, 788
FaiI YATR 8 cut(s) 109, 300, 423, 468, 482, 707, 779, 786
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 3 cut(s) 311, 659, 694
FatI CATG 5 cut(s) 107, 466, 480, 705, 784
Fnu4HI GCNGC 3 cut(s) 498, 501, 519
FokI GGATG 1 cut(s) 520
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 498, 501, 519
FspBI CTAG 2 cut(s) 713, 753
GluI GCNGC 3 cut(s) 498, 501, 519
HaeIII GGCC 2 cut(s) 479, 831
Hin1II CATG 5 cut(s) 111, 470, 484, 709, 788
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 3 cut(s) 220, 289, 581
HphI GGTGA 1 cut(s) 584
Hpy188I TCNGA 3 cut(s) 288, 618, 819
Hpy188III TCNNGA 6 cut(s) 64, 83, 328, 341, 397, 803
HpyAV CCTTC 4 cut(s) 394, 563, 733, 842
HpyCH4III ACNGT 5 cut(s) 43, 230, 419, 650, 723
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 25, 215, 433, 503, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 254, 410
HpyF3I CTNAG 5 cut(s) 146, 186, 269, 579, 816
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 5 cut(s) 111, 470, 484, 709, 788
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 3 cut(s) 391, 761, 794
Lsp1109I GCAGC 3 cut(s) 484, 487, 505
LweI GCATC 2 cut(s) 224, 244
MaeI CTAG 2 cut(s) 713, 753
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 134, 272, 715
MalI GATC 1 cut(s) 33
MbiI CCGCTC 1 cut(s) 797
MboI GATC 1 cut(s) 31
MboII GAAGA 5 cut(s) 86, 95, 373, 398, 827
MfeI CAATTG 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 3 cut(s) 7, 68, 158
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 6 cut(s) 149, 382, 529, 602, 612, 792
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 204, 558
MspR9I CCNGG 3 cut(s) 90, 678, 792
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 3 cut(s) 90, 678, 792
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 3 cut(s) 245, 254, 410
NcoI CCATGG 1 cut(s) 107
NdeII GATC 1 cut(s) 31
NheI GCTAGC 1 cut(s) 752
NlaIII CATG 5 cut(s) 111, 470, 484, 709, 788
NspI RCATGY 1 cut(s) 470
NspV TTCGAA 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 395
PasI CCCWGGG 1 cut(s) 677
PciI ACATGT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 171
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 220, 289
PkrI GCNGC 3 cut(s) 499, 502, 520
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PscI ACATGT 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 3 cut(s) 88, 676, 790
PspEI GGTNACC 1 cut(s) 134
PspGI CCWGG 3 cut(s) 88, 676, 790
PspPI GGNCC 2 cut(s) 477, 788
RsaI GTAC 4 cut(s) 227, 260, 590, 725
RsaNI GTAC 4 cut(s) 226, 259, 589, 724
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 204, 558
SatI GCNGC 3 cut(s) 498, 501, 519
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 477, 788
ScaI AGTACT 1 cut(s) 725
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 3 cut(s) 90, 678, 792
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 2 cut(s) 224, 244
SfcI CTRYAG 1 cut(s) 551
Sfr274I CTCGAG 1 cut(s) 395
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 1 cut(s) 788
SlaI CTCGAG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 83, 395
SmoI CTYRAG 2 cut(s) 83, 395
Sse9I AATT 3 cut(s) 7, 68, 158
SsiI CCGC 2 cut(s) 797, 849
SspMI CTAG 2 cut(s) 713, 753
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 88, 676, 790
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 5 cut(s) 43, 230, 419, 650, 723
TaiI ACGT 1 cut(s) 168
TaqI TCGA 5 cut(s) 72, 218, 396, 453, 633
TasI AATT 3 cut(s) 7, 68, 158
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 2 cut(s) 220, 289
Tru1I TTAA 2 cut(s) 204, 558
Tru9I TTAA 2 cut(s) 204, 558
TscAI CASTG 1 cut(s) 655
TseI GCWGC 3 cut(s) 497, 500, 518
TspDTI ATGAA 4 cut(s) 477, 497, 752, 766
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 788
XapI RAATTY 2 cut(s) 7, 68
XceI RCATGY 1 cut(s) 470
XhoI CTCGAG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 713, 753
ZrmI AGTACT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.