Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Reverse (-)

25242674 .. 25245002

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G271900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGCCAAGCACTTGGTTGCATTCAAGTGAAACAGTCAAAAGTTGCTGTGAGGGAACAATTTGGGAAGTTTGATAATGTGCTTGAACCAGGATGTCACTGCTTGCCCTGGTGTTTCGGGTACAAGATAGCCGGTGAGCTATCACTGCGTGTGCGCCAACTTGAAGTTCGATGTGAAACCAAGACCAAGGACAATGTGTTTGTCAATGTGGTTGCATCTATTCAGTATCGTGCCTTACCGGAAAAGATAGCGGATGCTTTCTATAAGCTCTCTAATGCCAACTCACAGATTCAGGCCTATGTGTTTGATGTTATCAGGGCAAGTGTACCCAAACTGGAGTTGGATGCTGTCTTTGAGCAGAAGAGCGACATAGCAAAAGCTGTTGAAGAGGAACTTGCAAAGGCGATGTCTACTTATGGTTATGAAATAGTCCAGACACTTATTGTGGATATTGTGCCTGACGTTCATGTGAAGAGAGCAATGAATGAGATCAATGCAGCTGCAAGACACAGGTTGGCCGCAAAAGAAAAGGCTGAAGCAGAGAAGATACTGCAGATCAAGCGAGCTGAAGGAGAGGCAGAGTCCAAGTACTTGGCAGGGCTTGGCATAGCCCGCCAGCGCCAGGCTATTGTTGATGGGCTGAGGGATAGTGTTCTTGTCTTCTCTGAGAATGTTCCTGGAACATCAGCCAAGGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAGGAGATTGGAGCATCCTCAAAGTCCTCGTCTGTTTTCATCCCGCACGGGCCAGGTGCAGTGAGGGATGTTGCTTCACAGATTCGGGAGGGTCTCCTTCAAGCTGATTATGCTAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

287

Amino Acids

31.59

Weight (kDa)

6.48

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	410
AciI	CCGC	4 cut(s)	251, 519, 613, 782
AcoI	YGGCCR	1 cut(s)	516
AcuI	CTGAAG	2 cut(s)	555, 588
AdeI	CACNNNGTG	1 cut(s)	149
AfaI	GTAC	3 cut(s)	122, 327, 590
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	5 cut(s)	26, 86, 164, 386, 839
AjnI	CCWGG	5 cut(s)	88, 107, 621, 676, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	6 cut(s)	139, 268, 380, 500, 566, 842
AluI	AGCT	6 cut(s)	139, 268, 380, 500, 566, 842
Alw26I	GTCTC	1 cut(s)	836
AoxI	GGCC	4 cut(s)	4, 294, 516, 788
ApeKI	GCWGC	2 cut(s)	497, 500
ArsI	GACNNNNNNTTYG	6 cut(s)	182, 214, 392, 424, 752, 784
AspLEI	GCGC	2 cut(s)	156, 621
AspS9I	GGNCC	2 cut(s)	4, 788
AsuHPI	GGTGA	2 cut(s)	146, 727
BbsI	GAAGAC	1 cut(s)	652
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	487, 509
BccI	CCATC	1 cut(s)	629
BciT130I	CCWGG	5 cut(s)	90, 109, 623, 678, 792
BcoDI	GTCTC	1 cut(s)	836
BfmI	CTRYAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	622
BisI	GCNGC	3 cut(s)	498, 501, 519
BlsI	GCNGC	3 cut(s)	499, 502, 520
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	5 cut(s)	90, 109, 623, 678, 792
BmgT120I	GGNCC	2 cut(s)	4, 788
BmrFI	CCNGG	5 cut(s)	90, 109, 623, 678, 792
BmsI	GCATC	4 cut(s)	224, 244, 334, 761
BpiI	GAAGAC	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	2 cut(s)	641, 852
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	3 cut(s)	107, 186, 690
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	5 cut(s)	90, 109, 623, 678, 792
BseDI	CCNNGG	3 cut(s)	107, 186, 690
BseGI	GGATG	7 cut(s)	98, 259, 349, 700, 752, 777, 811
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	632, 657
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	487, 509
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	4 cut(s)	6, 296, 518, 790
BsiSI	CCGG	2 cut(s)	132, 239
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	836
BsmI	GAATGC	1 cut(s)	21
BsnI	GGCC	4 cut(s)	6, 296, 518, 790
Bso31I	GGTCTC	1 cut(s)	836
Bsp143I	GATC	2 cut(s)	489, 555
BspACI	CCGC	4 cut(s)	251, 519, 613, 782
BspANI	GGCC	4 cut(s)	6, 296, 518, 790
BspCNI	CTCAG	2 cut(s)	633, 658
BspMAI	CTGCAG	1 cut(s)	555
BspQI	GCTCTTC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	107, 186, 690
BssMI	GATC	2 cut(s)	489, 555
BssT1I	CCWWGG	2 cut(s)	186, 690
Bst2UI	CCWGG	5 cut(s)	90, 109, 623, 678, 792
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	3 cut(s)	356, 381, 467
BstC8I	GCNNGC	4 cut(s)	104, 564, 613, 617
BstDEI	CTNAG	3 cut(s)	641, 666, 852
BstF5I	GGATG	7 cut(s)	98, 259, 349, 700, 752, 777, 811
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	2 cut(s)	156, 621
BstKTI	GATC	2 cut(s)	492, 558
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	2 cut(s)	489, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 559, 612, 848
BstNI	CCWGG	5 cut(s)	90, 109, 623, 678, 792
BstSCI	CCNGG	5 cut(s)	88, 107, 621, 676, 790
BstSFI	CTRYAG	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	487, 509
BstV2I	GAAGAC	1 cut(s)	652
BstXI	CCANNNNNNTGG	2 cut(s)	14, 592
BsuRI	GGCC	4 cut(s)	6, 296, 518, 790
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	7 cut(s)	98, 259, 349, 700, 752, 777, 811
BtsI	GCAGTG	3 cut(s)	97, 143, 804
BtsIMutI	CAGTG	3 cut(s)	97, 143, 804
Cac8I	GCNNGC	4 cut(s)	104, 564, 613, 617
CfoI	GCGC	2 cut(s)	156, 621
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	4, 788
Csp6I	GTAC	3 cut(s)	121, 326, 589
CviAII	CATG	4 cut(s)	467, 700, 706, 736
CviQI	GTAC	3 cut(s)	121, 326, 589
DdeI	CTNAG	3 cut(s)	641, 666, 852
DpnI	GATC	2 cut(s)	491, 557
DpnII	GATC	2 cut(s)	489, 555
DraIII	CACNNNGTG	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	3 cut(s)	356, 381, 467
EarI	CTCTTC	3 cut(s)	356, 381, 467
Eco130I	CCWWGG	2 cut(s)	186, 690
Eco147I	AGGCCT	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	836
Eco57I	CTGAAG	2 cut(s)	555, 588
EcoRII	CCWGG	5 cut(s)	88, 107, 621, 676, 790
EcoT14I	CCWWGG	2 cut(s)	186, 690
ErhI	CCWWGG	2 cut(s)	186, 690
FaeI	CATG	4 cut(s)	470, 703, 709, 739
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	4 cut(s)	466, 699, 705, 735
FauI	CCCGC	2 cut(s)	620, 789
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	3 cut(s)	498, 501, 519
FokI	GGATG	7 cut(s)	105, 266, 356, 707, 739, 764, 818
Fsp4HI	GCNGC	3 cut(s)	498, 501, 519
GlaI	GCGC	2 cut(s)	155, 620
GluI	GCNGC	3 cut(s)	498, 501, 519
GsuI	CTGGAG	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	622
HaeIII	GGCC	4 cut(s)	6, 296, 518, 790
HapII	CCGG	2 cut(s)	132, 239
HhaI	GCGC	2 cut(s)	156, 621
Hin1II	CATG	4 cut(s)	470, 703, 709, 739
Hin6I	GCGC	2 cut(s)	154, 619
HinP1I	GCGC	2 cut(s)	154, 619
HinfI	GANTC	4 cut(s)	289, 581, 718, 820
HpaII	CCGG	2 cut(s)	132, 239
HphI	GGTGA	2 cut(s)	146, 727
Hpy166II	GTNNAC	2 cut(s)	326, 411
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	2 cut(s)	433, 824
Hpy8I	GTNNAC	2 cut(s)	326, 411
HpyAV	CCTTC	3 cut(s)	563, 733, 845
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	7 cut(s)	21, 215, 398, 497, 503, 553, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 559, 612, 848
HpyF3I	CTNAG	3 cut(s)	641, 666, 852
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	470, 703, 709, 739
HspAI	GCGC	2 cut(s)	154, 619
Kzo9I	GATC	2 cut(s)	489, 555
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	749
Lsp1109I	GCAGC	2 cut(s)	487, 509
LweI	GCATC	4 cut(s)	224, 244, 334, 761
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	95, 715
MalI	GATC	2 cut(s)	491, 557
MboI	GATC	2 cut(s)	489, 555
MboII	GAAGA	5 cut(s)	373, 398, 484, 556, 652
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	590, 712
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	8 cut(s)	45, 382, 568, 636, 766, 775, 795, 820
MslI	CAYNNNNRTG	2 cut(s)	26, 704
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	2 cut(s)	132, 239
MspR9I	CCNGG	5 cut(s)	90, 109, 623, 678, 792
Mva1269I	GAATGC	1 cut(s)	21
MvaI	CCWGG	5 cut(s)	90, 109, 623, 678, 792
MwoI	GCNNNNNNNGC	4 cut(s)	145, 559, 612, 848
NdeII	GATC	2 cut(s)	489, 555
NlaIII	CATG	4 cut(s)	470, 703, 709, 739
NmuCI	GTSAC	2 cut(s)	95, 715
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	289, 820
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	499, 502, 520
PleI	GAGTC	2 cut(s)	589, 712
PpsI	GAGTC	2 cut(s)	589, 712
Psp6I	CCWGG	5 cut(s)	88, 107, 621, 676, 790
PspGI	CCWGG	5 cut(s)	88, 107, 621, 676, 790
PspPI	GGNCC	2 cut(s)	4, 788
PstI	CTGCAG	1 cut(s)	555
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	122, 327, 590
RsaNI	GTAC	3 cut(s)	121, 326, 589
RseI	CAYNNNNRTG	2 cut(s)	26, 704
SapI	GCTCTTC	1 cut(s)	356
SatI	GCNGC	3 cut(s)	498, 501, 519
Sau3AI	GATC	2 cut(s)	489, 555
Sau96I	GGNCC	2 cut(s)	4, 788
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	2 cut(s)	590, 712
ScrFI	CCNGG	5 cut(s)	90, 109, 623, 678, 792
SetI	ASST	9 cut(s)	141, 270, 382, 465, 502, 515, 568, 796, 844
SfaNI	GCATC	4 cut(s)	224, 244, 334, 761
SfcI	CTRYAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	26, 704
Sse9I	AATT	1 cut(s)	59
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	4 cut(s)	251, 519, 613, 782
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	5 cut(s)	88, 107, 621, 676, 790
StyI	CCWWGG	2 cut(s)	186, 690
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	169
TasI	AATT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	2 cut(s)	289, 820
TscAI	CASTG	3 cut(s)	104, 150, 804
TseFI	GTSAC	2 cut(s)	95, 715
TseI	GCWGC	2 cut(s)	497, 500
Tsp45I	GTSAC	2 cut(s)	95, 715
TspDTI	ATGAA	5 cut(s)	438, 455, 497, 752, 766
TspRI	CASTG	3 cut(s)	104, 150, 804
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 697
XmiI	GTMKAC	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.