RchiOBHm_Chr2g0169141

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008213
Physical Location & Seq
Reverse (-)
83401780 .. 83403226
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53677

Sequence Viewer

Length: 879 bp
ATGGGTCTAGTATTCGGCTGTTTGCAAGTGAAGGAGTCAAAGGTTGCTGTGAGGGAACATTTTGGTAAGTTTGATGATGCGCTTGAACCAGGTATTCACTGCTTGCCTTGGTGTTTTGGGTACAAGATAGCTGGTGAGGTATCACTGCGTGTGCGACAGCTCGATGTTAAATGTGAAACCAAGACTAAGGATAATGTATTTGTCAATGTGGTTGCATCTATTCAGTTTCGTGCATTACCGGAAAAAGTAGAGCATGCTTTCTATAAGCTAACTAACGCCAATGAGCAGATTCAAGCCTATGTTTTCGATGGTAGACAGTTTCATTCTTTTCTGCAGGCAAGTGTACCCAAGCTGGAGTTGGATAATGTCTTTGAGCAGAAGAGTGATATAGCAAAAGTCGTTGAAAAGGAGCTTGCAAAGGCAATGTCTGCTTATGGTTTCAAAATAGTCCAGACCCTTATTGTTGATATTGTGCCTGATGATCGTGTCAAGAGAGCGATGAATGAGATCAATGCAGCTGCAAGACTGAGGGTTGCTGCAATGGAAAAGGCTGAAGCAGAAAAAATTTTACAGGTCAAGAGAGCTGAAGCAGAAGCAGAGTCCAAGTACTTAGCAGGGCTTGGAATAGCTCGCCAGCGCCAGGCCATTGTTGACGGGCTGAGAAATAGTGTTGTTCTATTCTCTGAAAATGTTCCTGGAGCATCAGCCAAGGATGTCATGGACATGGTTCTACTGACTCAATACTTTGACACCATGAAGGAGATCGGAGCATTATCTAAGTCATCATCCGTTTTCATTCCCCACGGGCCAGGTGCTGTGAGAGACGTTGCTTCGCAGATTCGAGAGGGTCTCCTTCAACCCGATTCTGCTCAAAATTGA

Protein Analysis

292

Amino Acids

32.38

Weight (kDa)

6.97

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 188 8.1e-24 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 313
AcsI RAATTY 1 cut(s) 564
AcuI CTGAAG 2 cut(s) 573, 606
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 3 cut(s) 122, 345, 608
AfiI CCNNNNNNNGG 1 cut(s) 640
AgsI TTSAA 5 cut(s) 86, 293, 404, 442, 857
AjnI CCWGG 4 cut(s) 88, 639, 694, 808
AluBI AGCT 8 cut(s) 131, 160, 268, 352, 412, 518, 584, 629
AluI AGCT 8 cut(s) 131, 160, 268, 352, 412, 518, 584, 629
Alw26I GTCTC 2 cut(s) 816, 854
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 2 cut(s) 642, 806
ApeKI GCWGC 3 cut(s) 515, 518, 536
ApoI RAATTY 1 cut(s) 564
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 2 cut(s) 82, 639
AspS9I GGNCC 1 cut(s) 806
AsuHPI GGTGA 1 cut(s) 146
BbvI GCAGC 3 cut(s) 505, 523, 527
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 4 cut(s) 90, 641, 696, 810
BcoDI GTCTC 2 cut(s) 816, 854
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 3 cut(s) 516, 519, 537
BlsI GCNGC 3 cut(s) 517, 520, 538
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 4 cut(s) 90, 641, 696, 810
BmgT120I GGNCC 1 cut(s) 806
BmrFI CCNGG 4 cut(s) 90, 641, 696, 810
BmsI GCATC 3 cut(s) 67, 224, 710
BplI GAGNNNNNCTC 2 cut(s) 834, 866
BpmI CTGGAG 2 cut(s) 374, 717
BsaI GGTCTC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 107, 708, 802
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse3DI GCAATG 2 cut(s) 429, 546
BseBI CCWGG 4 cut(s) 90, 641, 696, 810
BseDI CCNNGG 3 cut(s) 107, 708, 802
BseGI GGATG 2 cut(s) 718, 785
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMI GCAATG 2 cut(s) 429, 546
BseMII CTCAG 2 cut(s) 518, 650
BseXI GCAGC 3 cut(s) 505, 523, 527
BshFI GGCC 2 cut(s) 644, 808
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 2 cut(s) 816, 854
BsmBI CGTCTC 1 cut(s) 816
BsnI GGCC 2 cut(s) 644, 808
Bso31I GGTCTC 1 cut(s) 854
Bsp143I GATC 3 cut(s) 481, 507, 762
BspANI GGCC 2 cut(s) 644, 808
BspCNI CTCAG 2 cut(s) 519, 651
BspMAI CTGCAG 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 854
BsrDI GCAATG 2 cut(s) 429, 546
BssECI CCNNGG 3 cut(s) 107, 708, 802
BssMI GATC 3 cut(s) 481, 507, 762
BssT1I CCWWGG 2 cut(s) 107, 708
Bst2UI CCWGG 4 cut(s) 90, 641, 696, 810
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 6 cut(s) 104, 255, 336, 414, 631, 635
BstDEI CTNAG 5 cut(s) 186, 527, 610, 659, 777
BstDSI CCRYGG 1 cut(s) 802
BstF5I GGATG 2 cut(s) 718, 785
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 2 cut(s) 82, 639
BstKTI GATC 3 cut(s) 484, 510, 765
BstMAI GTCTC 2 cut(s) 816, 854
BstMBI GATC 3 cut(s) 481, 507, 762
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 4 cut(s) 90, 641, 696, 810
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 4 cut(s) 88, 639, 694, 808
BstSFI CTRYAG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 505, 523, 527
BsuRI GGCC 2 cut(s) 644, 808
BtgI CCRYGG 1 cut(s) 802
BtgZI GCGATG 1 cut(s) 512
BtsCI GGATG 2 cut(s) 718, 785
BtsI GCAGTG 2 cut(s) 97, 143
BtsIMutI CAGTG 2 cut(s) 97, 143
Cac8I GCNNGC 6 cut(s) 104, 255, 336, 414, 631, 635
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 2 cut(s) 82, 639
Cfr13I GGNCC 1 cut(s) 806
CsiI ACCWGGT 1 cut(s) 88
Csp6I GTAC 3 cut(s) 121, 344, 607
CviAII CATG 4 cut(s) 254, 718, 724, 754
CviQI GTAC 3 cut(s) 121, 344, 607
DdeI CTNAG 5 cut(s) 186, 527, 610, 659, 777
DpnI GATC 3 cut(s) 483, 509, 764
DpnII GATC 3 cut(s) 481, 507, 762
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 107, 708
Eco31I GGTCTC 1 cut(s) 854
Eco57I CTGAAG 2 cut(s) 573, 606
EcoRII CCWGG 4 cut(s) 88, 639, 694, 808
EcoT14I CCWWGG 2 cut(s) 107, 708
ErhI CCWWGG 2 cut(s) 107, 708
Esp3I CGTCTC 1 cut(s) 816
FaeI CATG 4 cut(s) 257, 721, 727, 757
FaiI YATR 8 cut(s) 255, 264, 300, 389, 435, 719, 725, 755
FatI CATG 4 cut(s) 253, 717, 723, 753
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 516, 519, 537
FokI GGATG 2 cut(s) 725, 772
Fsp4HI GCNGC 3 cut(s) 516, 519, 537
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 81, 638
GluI GCNGC 3 cut(s) 516, 519, 537
GsuI CTGGAG 2 cut(s) 374, 717
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 2 cut(s) 644, 808
HapII CCGG 1 cut(s) 239
HhaI GCGC 2 cut(s) 82, 639
Hin1II CATG 4 cut(s) 257, 721, 727, 757
Hin6I GCGC 2 cut(s) 80, 637
HinP1I GCGC 2 cut(s) 80, 637
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 6 cut(s) 35, 289, 599, 736, 838, 863
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 314, 344, 652
Hpy188I TCNGA 2 cut(s) 685, 767
Hpy188III TCNNGA 4 cut(s) 451, 490, 577, 842
Hpy8I GTNNAC 3 cut(s) 314, 344, 652
HpyAV CCTTC 3 cut(s) 25, 751, 863
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 8 cut(s) 25, 215, 233, 334, 416, 515, 521, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 5 cut(s) 186, 527, 610, 659, 777
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 4 cut(s) 257, 721, 727, 757
HspAI GCGC 2 cut(s) 80, 637
Kzo9I GATC 3 cut(s) 481, 507, 762
LmnI GCTCC 3 cut(s) 409, 698, 767
Lsp1109I GCAGC 3 cut(s) 505, 523, 527
LweI GCATC 3 cut(s) 67, 224, 710
MabI ACCWGGT 1 cut(s) 88
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 825
MalI GATC 3 cut(s) 483, 509, 764
MboI GATC 3 cut(s) 481, 507, 762
MboII GAAGA 1 cut(s) 391
MluCI AATT 2 cut(s) 564, 874
MlyI GAGTC 3 cut(s) 44, 608, 730
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 4 cut(s) 45, 130, 522, 838
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 4 cut(s) 90, 641, 696, 810
MvaI CCWGG 4 cut(s) 90, 641, 696, 810
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 3 cut(s) 481, 507, 762
NlaIII CATG 4 cut(s) 257, 721, 727, 757
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 3 cut(s) 289, 838, 863
PfoI TCCNGGA 1 cut(s) 694
PkrI GCNGC 3 cut(s) 517, 520, 538
PleI GAGTC 3 cut(s) 43, 607, 730
PpsI GAGTC 3 cut(s) 43, 607, 730
Psp6I CCWGG 4 cut(s) 88, 639, 694, 808
PspGI CCWGG 4 cut(s) 88, 639, 694, 808
PspPI GGNCC 1 cut(s) 806
PstI CTGCAG 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 3 cut(s) 122, 345, 608
RsaNI GTAC 3 cut(s) 121, 344, 607
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 516, 519, 537
Sau3AI GATC 3 cut(s) 481, 507, 762
Sau96I GGNCC 1 cut(s) 806
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 3 cut(s) 44, 608, 730
ScrFI CCNGG 4 cut(s) 90, 641, 696, 810
SexAI ACCWGGT 1 cut(s) 88
SfaNI GCATC 3 cut(s) 67, 224, 710
SfcI CTRYAG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 722
SphI GCATGC 1 cut(s) 257
Sse9I AATT 2 cut(s) 564, 874
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 88, 639, 694, 808
StyI CCWWGG 2 cut(s) 107, 708
TaaI ACNGT 1 cut(s) 318
TaiI ACGT 1 cut(s) 828
TaqI TCGA 3 cut(s) 162, 306, 841
TasI AATT 2 cut(s) 564, 874
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 3 cut(s) 289, 838, 863
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 104, 150
TseI GCWGC 3 cut(s) 515, 518, 536
TspDTI ATGAA 4 cut(s) 311, 515, 770, 784
TspGWI ACGGA 1 cut(s) 778
TspRI CASTG 2 cut(s) 104, 150
XapI RAATTY 1 cut(s) 564
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 2 cut(s) 355, 715
XmiI GTMKAC 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.