Rw2G050520

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008213
Physical Location & Seq
Reverse (-)
78106657 .. 78108103
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050520.1

Sequence Viewer

Length: 861 bp
ATGGGTCTAGTATTCGGCTGTTTGCAAGTGAAGGAGTCAAAGGTTGCTGTGAGGGAACATTTTGGTAAGTTTGATGATGCGCTTGAACCAGGTATTCACTGCTTGCCTTGGTGTTTTGGGTACAAGATAGCTGGTGAGGTATCACTGCGTGTGCGACAGCTCGATGTTAAATGTGAAACCAAGACTAAGGATAATGTATTTGTCAATGTGGTTGCATCTATTCAGTTTCGTGCATTACCGGAAAAAGTAGAGCATGCTTTCTATAAGCTAACTAACGCCAATGAGCAGATTCAAGCCTATGTTTTCGATGTTATCAGGGCAAGTGTACCCAAGCTGGAGTTGGATAATGTCTTTGAGCAGAAGAGTGATATAGCAAAAGTCGTTGAAAAGGAGCTTGCAAAGGCAATGTCTGCTTATGGTTTCAAAATAGTCCAGACCCTTATTGTTGATATTGTGCCTGATGATCGTGTCAAGAGAGCGATGAATGAGATCAATGCAGCTGCAAGACTGAGGGTTGCTGCAATGGAAAAGGCTGAAGCAGAAAAAATTTTACAGGTCAAGAGAGCTGAAGCAGAAGCAGAGTCCAAGTACTTAGCAGGGCTTGGAATAGCTCGCCAGCGCCAGGCCATTGTTGACGGGCTGAGAAATAGTGTTGTTCTATTCTCTGAAAATGTTCCTGGAGCATCAGCCAAGGATGTCATGGACATGGTTCTACTGACTCAATACTTTGACACCATGAAGGAGATCGGAGCATTATCAAAGTCATCATCCGTTTTCATTCCCCACGGGCCAGGTGCTGTGAGAGACGTTGCTTCGCAGATTCGAGAGGGTCTCCTTCAACCCGATTCTGCTCAAAATTGA

Protein Analysis

286

Amino Acids

31.64

Weight (kDa)

6.92

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 182 2e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 2 cut(s) 555, 588
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 3 cut(s) 122, 327, 590
AfiI CCNNNNNNNGG 1 cut(s) 622
AgsI TTSAA 5 cut(s) 86, 293, 386, 424, 839
AjnI CCWGG 4 cut(s) 88, 621, 676, 790
AluBI AGCT 8 cut(s) 131, 160, 268, 334, 394, 500, 566, 611
AluI AGCT 8 cut(s) 131, 160, 268, 334, 394, 500, 566, 611
Alw26I GTCTC 2 cut(s) 798, 836
AlwNI CAGNNNCTG 1 cut(s) 797
AoxI GGCC 2 cut(s) 624, 788
ApeKI GCWGC 3 cut(s) 497, 500, 518
ApoI RAATTY 1 cut(s) 546
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
Asp700I GAANNNNTTC 1 cut(s) 672
AspLEI GCGC 2 cut(s) 82, 621
AspS9I GGNCC 1 cut(s) 788
AsuHPI GGTGA 1 cut(s) 146
BbvI GCAGC 3 cut(s) 487, 505, 509
BciT130I CCWGG 4 cut(s) 90, 623, 678, 792
BcoDI GTCTC 2 cut(s) 798, 836
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 622
BisI GCNGC 3 cut(s) 498, 501, 519
BlsI GCNGC 3 cut(s) 499, 502, 520
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 4 cut(s) 90, 623, 678, 792
BmgT120I GGNCC 1 cut(s) 788
BmrFI CCNGG 4 cut(s) 90, 623, 678, 792
BmsI GCATC 3 cut(s) 67, 224, 692
BplI GAGNNNNNCTC 2 cut(s) 816, 848
BpmI CTGGAG 2 cut(s) 356, 699
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 3 cut(s) 107, 690, 784
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse3DI GCAATG 2 cut(s) 411, 528
BseBI CCWGG 4 cut(s) 90, 623, 678, 792
BseDI CCNNGG 3 cut(s) 107, 690, 784
BseGI GGATG 2 cut(s) 700, 767
BseLI CCNNNNNNNGG 1 cut(s) 622
BseMI GCAATG 2 cut(s) 411, 528
BseMII CTCAG 2 cut(s) 500, 632
BseXI GCAGC 3 cut(s) 487, 505, 509
BshFI GGCC 2 cut(s) 626, 790
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 622
BsmAI GTCTC 2 cut(s) 798, 836
BsmBI CGTCTC 1 cut(s) 798
BsnI GGCC 2 cut(s) 626, 790
Bso31I GGTCTC 1 cut(s) 836
Bsp143I GATC 3 cut(s) 463, 489, 744
BspANI GGCC 2 cut(s) 626, 790
BspCNI CTCAG 2 cut(s) 501, 633
BspTNI GGTCTC 1 cut(s) 836
BsrDI GCAATG 2 cut(s) 411, 528
BssECI CCNNGG 3 cut(s) 107, 690, 784
BssMI GATC 3 cut(s) 463, 489, 744
BssT1I CCWWGG 2 cut(s) 107, 690
Bst2UI CCWGG 4 cut(s) 90, 623, 678, 792
Bst6I CTCTTC 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 5 cut(s) 104, 255, 396, 613, 617
BstDEI CTNAG 4 cut(s) 186, 509, 592, 641
BstDSI CCRYGG 1 cut(s) 784
BstF5I GGATG 2 cut(s) 700, 767
BstH2I RGCGCY 1 cut(s) 622
BstHHI GCGC 2 cut(s) 82, 621
BstKTI GATC 3 cut(s) 466, 492, 747
BstMAI GTCTC 2 cut(s) 798, 836
BstMBI GATC 3 cut(s) 463, 489, 744
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 4 cut(s) 90, 623, 678, 792
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 4 cut(s) 88, 621, 676, 790
BstV1I GCAGC 3 cut(s) 487, 505, 509
BsuRI GGCC 2 cut(s) 626, 790
BtgI CCRYGG 1 cut(s) 784
BtgZI GCGATG 1 cut(s) 494
BtsCI GGATG 2 cut(s) 700, 767
BtsI GCAGTG 2 cut(s) 97, 143
BtsIMutI CAGTG 2 cut(s) 97, 143
Cac8I GCNNGC 5 cut(s) 104, 255, 396, 613, 617
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 2 cut(s) 82, 621
Cfr13I GGNCC 1 cut(s) 788
CsiI ACCWGGT 1 cut(s) 88
Csp6I GTAC 3 cut(s) 121, 326, 589
CviAII CATG 4 cut(s) 254, 700, 706, 736
CviQI GTAC 3 cut(s) 121, 326, 589
DdeI CTNAG 4 cut(s) 186, 509, 592, 641
DpnI GATC 3 cut(s) 465, 491, 746
DpnII GATC 3 cut(s) 463, 489, 744
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 107, 690
Eco31I GGTCTC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 555, 588
EcoRII CCWGG 4 cut(s) 88, 621, 676, 790
EcoT14I CCWWGG 2 cut(s) 107, 690
ErhI CCWWGG 2 cut(s) 107, 690
Esp3I CGTCTC 1 cut(s) 798
FaeI CATG 4 cut(s) 257, 703, 709, 739
FaiI YATR 8 cut(s) 255, 264, 300, 371, 417, 701, 707, 737
FatI CATG 4 cut(s) 253, 699, 705, 735
Fnu4HI GCNGC 3 cut(s) 498, 501, 519
FokI GGATG 2 cut(s) 707, 754
Fsp4HI GCNGC 3 cut(s) 498, 501, 519
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 81, 620
GluI GCNGC 3 cut(s) 498, 501, 519
GsuI CTGGAG 2 cut(s) 356, 699
HaeII RGCGCY 1 cut(s) 622
HaeIII GGCC 2 cut(s) 626, 790
HapII CCGG 1 cut(s) 239
HhaI GCGC 2 cut(s) 82, 621
Hin1II CATG 4 cut(s) 257, 703, 709, 739
Hin6I GCGC 2 cut(s) 80, 619
HinP1I GCGC 2 cut(s) 80, 619
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 6 cut(s) 35, 289, 581, 718, 820, 845
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 326, 634
Hpy188I TCNGA 2 cut(s) 667, 749
Hpy188III TCNNGA 4 cut(s) 433, 472, 559, 824
Hpy8I GTNNAC 2 cut(s) 326, 634
HpyAV CCTTC 3 cut(s) 25, 733, 845
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 7 cut(s) 25, 215, 233, 398, 497, 503, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 4 cut(s) 186, 509, 592, 641
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 4 cut(s) 257, 703, 709, 739
HspAI GCGC 2 cut(s) 80, 619
Kzo9I GATC 3 cut(s) 463, 489, 744
LmnI GCTCC 3 cut(s) 391, 680, 749
Lsp1109I GCAGC 3 cut(s) 487, 505, 509
LweI GCATC 3 cut(s) 67, 224, 692
MabI ACCWGGT 1 cut(s) 88
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 807
MalI GATC 3 cut(s) 465, 491, 746
MboI GATC 3 cut(s) 463, 489, 744
MboII GAAGA 1 cut(s) 373
MluCI AATT 2 cut(s) 546, 856
MlyI GAGTC 3 cut(s) 44, 590, 712
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 4 cut(s) 45, 130, 504, 820
MroXI GAANNNNTTC 1 cut(s) 672
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 4 cut(s) 90, 623, 678, 792
MvaI CCWGG 4 cut(s) 90, 623, 678, 792
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeII GATC 3 cut(s) 463, 489, 744
NlaIII CATG 4 cut(s) 257, 703, 709, 739
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 3 cut(s) 289, 820, 845
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 3 cut(s) 499, 502, 520
PleI GAGTC 3 cut(s) 43, 589, 712
PpsI GAGTC 3 cut(s) 43, 589, 712
Psp6I CCWGG 4 cut(s) 88, 621, 676, 790
PspGI CCWGG 4 cut(s) 88, 621, 676, 790
PspPI GGNCC 1 cut(s) 788
PstNI CAGNNNCTG 1 cut(s) 797
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 3 cut(s) 122, 327, 590
RsaNI GTAC 3 cut(s) 121, 326, 589
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 498, 501, 519
Sau3AI GATC 3 cut(s) 463, 489, 744
Sau96I GGNCC 1 cut(s) 788
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 3 cut(s) 44, 590, 712
ScrFI CCNGG 4 cut(s) 90, 623, 678, 792
SexAI ACCWGGT 1 cut(s) 88
SfaNI GCATC 3 cut(s) 67, 224, 692
SmiMI CAYNNNNRTG 1 cut(s) 704
SphI GCATGC 1 cut(s) 257
Sse9I AATT 2 cut(s) 546, 856
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 88, 621, 676, 790
StyI CCWWGG 2 cut(s) 107, 690
TaiI ACGT 1 cut(s) 810
TaqI TCGA 3 cut(s) 162, 306, 823
TasI AATT 2 cut(s) 546, 856
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 3 cut(s) 289, 820, 845
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 104, 150
TseI GCWGC 3 cut(s) 497, 500, 518
TspDTI ATGAA 3 cut(s) 497, 752, 766
TspGWI ACGGA 1 cut(s) 760
TspRI CASTG 2 cut(s) 104, 150
XapI RAATTY 1 cut(s) 546
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 697
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.