Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Forward (+)

3086910 .. 3088504

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1046900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCCCTGGTGTTTCGGATACAAGGTAGCCGGTGAGCTCTCACTGCGCGTGCGACAACTTAAAGTTCAATGCGAAACCAAGACCAAGGATAATATGTTTCTGAACGTGGTTGCATCGATTCACTATCGTCCCTTGCCAGACAAGATACCGGATGCTTTCTACAAGCTCTTGAATGCCGACTTGCAGATTCAGGCTTATGTGTTTGATGTTATTAGGGAAACTGTGCCGAAACTGGAGCTTGATACCGTCTTTGAGCAGAAAAGTGACATAGCAAAAGCTGTTCAAAAGGAACTTGCAAAGGTTATGTATGAGTACGGTTTTGAAATAGTCCAGACCCTGATTGTGGACATTGTACCACATGTTGTATCGATAAAAGCGATGAATGAGATCAGTGCAGCTAAAAGGAAGAGGCTGGTAGCGAAAGAGAAGGCGGAAGAGGAAAACATCCTGAAGATCAAGCGAGCAGAAGGAGAGGCCGAGTCCAAGTACTTTGTAGGACTTGGCATAGCGCGCCAGGGCCAGGCCATTGTTGACGGGCTGAGGGACAGCGTGCTTGACTGCTTTACACAGATTATGCTAAGGAGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

197

Amino Acids

22.34

Weight (kDa)

8.65

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	13 - 147	1.2e-18	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	48, 511
AciI	CCGC	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	314, 354, 488
AfiI	CCNNNNNNNGG	2 cut(s)	343, 520
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	68, 172, 284, 323
AjnI	CCWGG	3 cut(s)	5, 513, 519
AluBI	AGCT	5 cut(s)	37, 166, 238, 278, 398
AluI	AGCT	5 cut(s)	37, 166, 238, 278, 398
Alw21I	GWGCWC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	3 cut(s)	474, 517, 522
ApeKI	GCWGC	1 cut(s)	395
AspLEI	GCGC	3 cut(s)	48, 511, 513
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	407
BciT130I	CCWGG	3 cut(s)	7, 515, 521
BciVI	GTATCC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	3 cut(s)	7, 515, 521
BmgT120I	GGNCC	1 cut(s)	517
BmrFI	CCNGG	3 cut(s)	7, 515, 521
BmsI	GCATC	2 cut(s)	122, 142
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	2 cut(s)	539, 578
Bsa29I	ATCGAT	2 cut(s)	116, 368
BsaJI	CCNNGG	3 cut(s)	5, 84, 514
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 520
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	7, 515, 521
BseCI	ATCGAT	2 cut(s)	116, 368
BseDI	CCNNGG	3 cut(s)	5, 84, 514
BseGI	GGATG	2 cut(s)	157, 444
BseLI	CCNNNNNNNGG	2 cut(s)	343, 520
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	237
BsePI	GCGCGC	1 cut(s)	509
BseXI	GCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	48, 511
BshFI	GGCC	3 cut(s)	476, 519, 524
BshVI	ATCGAT	2 cut(s)	116, 368
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	30, 149
BslFI	GGGAC	2 cut(s)	114, 557
BslI	CCNNNNNNNGG	2 cut(s)	343, 520
BsmFI	GGGAC	2 cut(s)	114, 557
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	476, 519, 524
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	387, 453
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	3 cut(s)	476, 519, 524
BspCNI	CTCAG	1 cut(s)	531
BspDI	ATCGAT	2 cut(s)	116, 368
BspFNI	CGCG	2 cut(s)	48, 511
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	5, 84, 514
BssHII	GCGCGC	1 cut(s)	509
BssMI	GATC	2 cut(s)	387, 453
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	3 cut(s)	7, 515, 521
Bst4CI	ACNGT	3 cut(s)	223, 247, 317
Bst6I	CTCTTC	2 cut(s)	401, 429
BstC8I	GCNNGC	4 cut(s)	50, 462, 511, 551
BstDEI	CTNAG	2 cut(s)	539, 578
BstF5I	GGATG	2 cut(s)	157, 444
BstFNI	CGCG	2 cut(s)	48, 511
BstHHI	GCGC	3 cut(s)	48, 511, 513
BstKTI	GATC	2 cut(s)	390, 456
BstMBI	GATC	2 cut(s)	387, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 510
BstNI	CCWGG	3 cut(s)	7, 515, 521
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	5, 513, 519
BstUI	CGCG	2 cut(s)	48, 511
BstV1I	GCAGC	1 cut(s)	407
Bsu15I	ATCGAT	2 cut(s)	116, 368
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	476, 519, 524
BsuTUI	ATCGAT	2 cut(s)	116, 368
BtgZI	GCGATG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	157, 444
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 397
Cac8I	GCNNGC	4 cut(s)	50, 462, 511, 551
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	3 cut(s)	48, 511, 513
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	517
ClaI	ATCGAT	2 cut(s)	116, 368
Csp6I	GTAC	3 cut(s)	313, 353, 487
CviAII	CATG	1 cut(s)	359
CviQI	GTAC	3 cut(s)	313, 353, 487
DdeI	CTNAG	2 cut(s)	539, 578
DpnI	GATC	2 cut(s)	389, 455
DpnII	GATC	2 cut(s)	387, 453
Eam1104I	CTCTTC	2 cut(s)	401, 429
EarI	CTCTTC	2 cut(s)	401, 429
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	5, 513, 519
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	362
FaiI	YATR	8 cut(s)	95, 198, 269, 305, 309, 360, 506, 575
FaqI	GGGAC	2 cut(s)	114, 557
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	164, 431
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	396
GlaI	GCGC	3 cut(s)	47, 510, 512
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	476, 519, 524
HapII	CCGG	2 cut(s)	30, 149
HhaI	GCGC	3 cut(s)	48, 511, 513
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	3 cut(s)	46, 509, 511
HinP1I	GCGC	3 cut(s)	46, 509, 511
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	3 cut(s)	118, 187, 479
HpaII	CCGG	2 cut(s)	30, 149
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	346, 532
Hpy188I	TCNGA	2 cut(s)	17, 102
Hpy188III	TCNNGA	3 cut(s)	169, 331, 448
Hpy8I	GTNNAC	2 cut(s)	346, 532
HpyAV	CCTTC	2 cut(s)	421, 461
HpyCH4III	ACNGT	3 cut(s)	223, 247, 317
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	113, 184, 296, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 510
HpyF3I	CTNAG	2 cut(s)	539, 578
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	3 cut(s)	46, 509, 511
Kzo9I	GATC	2 cut(s)	387, 453
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	2 cut(s)	122, 142
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	389, 455
MboI	GATC	2 cut(s)	387, 453
MboII	GAAGA	3 cut(s)	418, 446, 463
MhlI	GDGCHC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	5 cut(s)	402, 430, 466, 534, 576
MseI	TTAA	1 cut(s)	60
MspI	CCGG	2 cut(s)	30, 149
MspR9I	CCNGG	3 cut(s)	7, 515, 521
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	3 cut(s)	7, 515, 521
MvnI	CGCG	2 cut(s)	48, 511
MwoI	GCNNNNNNNGC	2 cut(s)	43, 510
NdeII	GATC	2 cut(s)	387, 453
NlaIII	CATG	1 cut(s)	362
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	362
PauI	GCGCGC	1 cut(s)	509
PciI	ACATGT	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	118, 187
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PscI	ACATGT	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	3 cut(s)	5, 513, 519
PspGI	CCWGG	3 cut(s)	5, 513, 519
PspPI	GGNCC	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	337
PteI	GCGCGC	1 cut(s)	509
RsaI	GTAC	3 cut(s)	314, 354, 488
RsaNI	GTAC	3 cut(s)	313, 353, 487
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	387, 453
Sau96I	GGNCC	1 cut(s)	517
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	7, 515, 521
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	8 cut(s)	27, 39, 108, 168, 240, 280, 303, 400
SfaNI	GCATC	2 cut(s)	122, 142
SsiI	CCGC	1 cut(s)	431
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	5, 513, 519
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	223, 247, 317
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	116, 368
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	118, 187
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	48, 397
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	48, 397
XceI	RCATGY	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.