Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Forward (+)

2287818 .. 2288895

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTCAAGCACTTGGTTGTGTTCAAGTGAAGCAGTCAAAAGTTGCTGTCAGGGAACAATTTGGGAAGTTTGATGGTGTGCTTGAACCAGGATGCCATTGCATGCCCTGGTGTTTCGGATACAAGGTAGCCGGTGTGCTCTCACTGCGCATGCGACAACTTAAAGTTCAATGCGAAACCAAGACCAAGGATAATATGTTTCTGAATGTGGTTGCATCGATTCACTATCGCCCCTTGCCAGACAAGATACCGGATGCTTTCTACAAGCTCTTGAATGCTGACTCGCAGATTCTGGCTTATGTGTTTGATGTTATTAGGGAAACTGTGCCAAAATTGGAGCTTGATACCGTCTTTGAGCAGAAAAGTGACATAGCAAAAGCTGTTCAAAAGGAACTTGCAAAGGTTATGTATGAGTACGGTTTTGAAATAGTCGAGACCCTGATTGTGGACATTGTACCACATGTTGTAGTGATAAAAGCGATGAATGAGATCAGTGCAGCTAAAAGGAAGAGGCTGGTGGCGAAAGAGAAGGCGGAAGAAGAGAAAATGCTGAAGATCAAGCGAGCGGAAGGAGAGGCCGAGTCCAAGTACTTCGTAGGACTTGGCATAGCGCGCCAGGGCCAGGCCATTGTTGACGGGCTGAGGGACACCGTGCTTGACTGCTTTACACAGATTATGCTAAGGAGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

231

Amino Acids

25.99

Weight (kDa)

8.79

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	149
AccBSI	CCGCTC	1 cut(s)	566
AccII	CGCG	1 cut(s)	613
AciI	CCGC	2 cut(s)	533, 566
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	3 cut(s)	416, 456, 590
AfiI	CCNNNNNNNGG	2 cut(s)	445, 622
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	6 cut(s)	26, 86, 170, 274, 386, 425
AjnI	CCWGG	4 cut(s)	88, 107, 615, 621
AluBI	AGCT	4 cut(s)	268, 340, 380, 500
AluI	AGCT	4 cut(s)	268, 340, 380, 500
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	3 cut(s)	576, 619, 624
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	3 cut(s)	150, 613, 615
AspS9I	GGNCC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	141
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	4 cut(s)	90, 109, 617, 623
BciVI	GTATCC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	4 cut(s)	90, 109, 617, 623
BmgT120I	GGNCC	1 cut(s)	619
BmrFI	CCNGG	4 cut(s)	90, 109, 617, 623
BmsI	GCATC	3 cut(s)	83, 224, 244
Bpu10I	CCTNAGC	2 cut(s)	641, 680
Bsa29I	ATCGAT	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	107, 186, 616
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 622
Bse118I	RCCGGY	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	4 cut(s)	90, 109, 617, 623
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	107, 186, 616
BseGI	GGATG	2 cut(s)	98, 259
BseLI	CCNNNNNNNGG	2 cut(s)	445, 622
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	632
BsePI	GCGCGC	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	3 cut(s)	578, 621, 626
BshVI	ATCGAT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	132, 251
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	445, 622
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	578, 621, 626
Bso31I	GGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	489, 555
BspACI	CCGC	2 cut(s)	533, 566
BspANI	GGCC	3 cut(s)	578, 621, 626
BspCNI	CTCAG	1 cut(s)	633
BspDI	ATCGAT	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	428
BsrBI	CCGCTC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	107, 186, 616
BssHII	GCGCGC	1 cut(s)	611
BssMI	GATC	2 cut(s)	489, 555
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	4 cut(s)	90, 109, 617, 623
Bst4CI	ACNGT	4 cut(s)	325, 349, 419, 652
Bst6I	CTCTTC	2 cut(s)	503, 534
BstC8I	GCNNGC	4 cut(s)	104, 152, 564, 613
BstDEI	CTNAG	2 cut(s)	641, 680
BstF5I	GGATG	2 cut(s)	98, 259
BstFNI	CGCG	1 cut(s)	613
BstHHI	GCGC	3 cut(s)	150, 613, 615
BstKTI	GATC	2 cut(s)	492, 558
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	489, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 612
BstNI	CCWGG	4 cut(s)	90, 109, 617, 623
BstNSI	RCATGY	3 cut(s)	106, 154, 464
BstSCI	CCNGG	4 cut(s)	88, 107, 615, 621
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	509
Bsu15I	ATCGAT	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	578, 621, 626
BsuTUI	ATCGAT	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	98, 259
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	143, 499
Cac8I	GCNNGC	4 cut(s)	104, 152, 564, 613
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	3 cut(s)	150, 613, 615
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	619
ClaI	ATCGAT	1 cut(s)	218
Csp6I	GTAC	3 cut(s)	415, 455, 589
CviAII	CATG	3 cut(s)	103, 151, 461
CviQI	GTAC	3 cut(s)	415, 455, 589
DdeI	CTNAG	2 cut(s)	641, 680
DpnI	GATC	2 cut(s)	491, 557
DpnII	GATC	2 cut(s)	489, 555
Eam1104I	CTCTTC	2 cut(s)	503, 534
EarI	CTCTTC	2 cut(s)	503, 534
EciI	GGCGGA	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	572
EcoRII	CCWGG	4 cut(s)	88, 107, 615, 621
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	106, 154, 464
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	3 cut(s)	102, 150, 460
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	2 cut(s)	105, 266
Fsp4HI	GCNGC	1 cut(s)	498
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	3 cut(s)	149, 612, 614
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	578, 621, 626
HapII	CCGG	2 cut(s)	132, 251
HhaI	GCGC	3 cut(s)	150, 613, 615
Hin1II	CATG	3 cut(s)	106, 154, 464
Hin6I	GCGC	3 cut(s)	148, 611, 613
HinP1I	GCGC	3 cut(s)	148, 611, 613
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	4 cut(s)	220, 281, 289, 581
HpaII	CCGG	2 cut(s)	132, 251
Hpy166II	GTNNAC	2 cut(s)	448, 634
Hpy188I	TCNGA	2 cut(s)	119, 204
Hpy188III	TCNNGA	2 cut(s)	271, 433
Hpy8I	GTNNAC	2 cut(s)	448, 634
HpyAV	CCTTC	2 cut(s)	523, 563
HpyCH4III	ACNGT	4 cut(s)	325, 349, 419, 652
HpyCH4V	TGCA	4 cut(s)	102, 215, 398, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 612
HpyF3I	CTNAG	2 cut(s)	641, 680
Hsp92II	CATG	3 cut(s)	106, 154, 464
HspAI	GCGC	3 cut(s)	148, 611, 613
Kzo9I	GATC	2 cut(s)	489, 555
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	3 cut(s)	83, 224, 244
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	2 cut(s)	491, 557
MbiI	CCGCTC	1 cut(s)	566
MboI	GATC	2 cut(s)	489, 555
MboII	GAAGA	4 cut(s)	520, 548, 551, 565
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	59, 332
MlyI	GAGTC	2 cut(s)	275, 590
MnlI	CCTC	4 cut(s)	504, 568, 636, 678
MseI	TTAA	1 cut(s)	162
MspI	CCGG	2 cut(s)	132, 251
MspR9I	CCNGG	4 cut(s)	90, 109, 617, 623
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	4 cut(s)	90, 109, 617, 623
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	2 cut(s)	145, 612
NdeII	GATC	2 cut(s)	489, 555
NlaIII	CATG	3 cut(s)	106, 154, 464
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	365
NsbI	TGCGCA	1 cut(s)	149
NspI	RCATGY	3 cut(s)	106, 154, 464
PaeI	GCATGC	2 cut(s)	106, 154
PauI	GCGCGC	1 cut(s)	611
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	220, 289
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	2 cut(s)	275, 589
PpsI	GAGTC	2 cut(s)	275, 589
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	4 cut(s)	88, 107, 615, 621
PspGI	CCWGG	4 cut(s)	88, 107, 615, 621
PspPI	GGNCC	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	292
PteI	GCGCGC	1 cut(s)	611
RsaI	GTAC	3 cut(s)	416, 456, 590
RsaNI	GTAC	3 cut(s)	415, 455, 589
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	2 cut(s)	489, 555
Sau96I	GGNCC	1 cut(s)	619
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	2 cut(s)	275, 590
ScrFI	CCNGG	4 cut(s)	90, 109, 617, 623
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	6 cut(s)	129, 270, 342, 382, 405, 502
SfaNI	GCATC	3 cut(s)	83, 224, 244
SphI	GCATGC	2 cut(s)	106, 154
Sse9I	AATT	2 cut(s)	59, 332
SsiI	CCGC	2 cut(s)	533, 566
StyD4I	CCNGG	4 cut(s)	88, 107, 615, 621
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	325, 349, 419, 652
TaqI	TCGA	2 cut(s)	218, 432
TasI	AATT	2 cut(s)	59, 332
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	2 cut(s)	220, 289
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	150, 499
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	150, 499
XceI	RCATGY	3 cut(s)	106, 154, 464
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.