Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006812.1

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Reverse (-)

540 .. 2113

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006812.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgggtcaagcacttggttgtattctagtgaaggagtcgacagttgttgtgaaggaacattttgggaagtttgatgaggtgcttgaaccagggtgtcactgcttgccttggtgtttcggatacaaggcagccggtgtgctatcaatgcgtgtgcagcaactccaagttaaatgtgaaactaagactaaggataatgtgtttgtcaatgtggttgcatcgattcaattccgtgccttaccagcgaaagtaggggatgctttctacaagctcactaacaccactgctcagattcaggcctatgttttcgatgttatcagggcaagtgtacccaaattggagttggatgctgtgtttgaacagaagagtgacatagcaaaagctgttgaagaggagcttgaaaaggcaatgtctgcttatggttttgaaatcgtcgagactctcattgttgatattgtgcctgataatcgtgtgaagaaagcaatgaatgagatcaatgcagctgcaaggcagagggttgcagcaaaggaaaaggctgaagccgagaagatactacaggtcaagcgagctgaaggagaggcagagtccaagtacttggcagggcttgggatagctcgccagcgccaggccattgttgacgggttgagggacagtgttcttgtcttctctgataatgttcctggaacttctcccaaggatgtcatggacatggtgctggtgactcaatacttcgacactatgaaggagatcggagcattgtcaaagtcaacatctgtcttcatcccacacgggccaggtgctgtcaaggacgttgcttcccagattcgagaaggtctcctccaagctgattctgctcacaatttgaaggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

289

Amino Acids

31.61

Weight (kDa)

6.16

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	555, 588
AfaI	GTAC	2 cut(s)	327, 590
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	7 cut(s)	86, 224, 356, 386, 398, 425, 862
AjnI	CCWGG	4 cut(s)	88, 621, 676, 790
AluBI	AGCT	7 cut(s)	268, 380, 394, 500, 566, 611, 842
AluI	AGCT	7 cut(s)	268, 380, 394, 500, 566, 611, 842
Alw26I	GTCTC	2 cut(s)	428, 836
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	3 cut(s)	294, 624, 788
ApeKI	GCWGC	5 cut(s)	128, 154, 497, 500, 518
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	1 cut(s)	727
BbsI	GAAGAC	2 cut(s)	652, 766
BbvI	GCAGC	5 cut(s)	140, 166, 487, 509, 530
BciT130I	CCWGG	4 cut(s)	90, 623, 678, 792
BciVI	GTATCC	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	428, 836
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	5 cut(s)	129, 155, 498, 501, 519
BlsI	GCNGC	5 cut(s)	130, 156, 499, 502, 520
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	4 cut(s)	90, 623, 678, 792
BmgT120I	GGNCC	1 cut(s)	788
BmrFI	CCNGG	4 cut(s)	90, 623, 678, 792
BmsI	GCATC	3 cut(s)	224, 244, 334
BpiI	GAAGAC	2 cut(s)	652, 766
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
Bsa29I	ATCGAT	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	3 cut(s)	89, 107, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse118I	RCCGGY	1 cut(s)	131
Bse3DI	GCAATG	2 cut(s)	411, 486
BseBI	CCWGG	4 cut(s)	90, 623, 678, 792
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	89, 107, 690
BseGI	GGATG	4 cut(s)	259, 349, 700, 777
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	2 cut(s)	411, 486
BseMII	CTCAG	1 cut(s)	299
BseRI	GAGGAG	2 cut(s)	404, 824
BseXI	GCAGC	5 cut(s)	140, 166, 487, 509, 530
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	296, 626, 790
BshVI	ATCGAT	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	2 cut(s)	428, 836
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	296, 626, 790
Bso31I	GGTCTC	1 cut(s)	836
Bsp143I	GATC	2 cut(s)	489, 744
BspANI	GGCC	3 cut(s)	296, 626, 790
BspCNI	CTCAG	1 cut(s)	298
BspDI	ATCGAT	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	411, 486
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	89, 107, 690
BssMI	GATC	2 cut(s)	489, 744
BssT1I	CCWWGG	2 cut(s)	107, 690
Bst2UI	CCWGG	4 cut(s)	90, 623, 678, 792
Bst4CI	ACNGT	2 cut(s)	43, 650
Bst6I	CTCTTC	2 cut(s)	356, 381
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	4 cut(s)	104, 564, 613, 617
BstDEI	CTNAG	3 cut(s)	180, 186, 285
BstF5I	GGATG	4 cut(s)	259, 349, 700, 777
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	2 cut(s)	492, 747
BstMAI	GTCTC	2 cut(s)	428, 836
BstMBI	GATC	2 cut(s)	489, 744
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 154, 239, 410, 848
BstNI	CCWGG	4 cut(s)	90, 623, 678, 792
BstSCI	CCNGG	4 cut(s)	88, 621, 676, 790
BstSFI	CTRYAG	1 cut(s)	551
BstV1I	GCAGC	5 cut(s)	140, 166, 487, 509, 530
BstV2I	GAAGAC	2 cut(s)	652, 766
BstXI	CCANNNNNNTGG	1 cut(s)	592
Bsu15I	ATCGAT	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	296, 626, 790
BsuTUI	ATCGAT	1 cut(s)	218
BtsCI	GGATG	4 cut(s)	259, 349, 700, 777
BtsI	GCAGTG	2 cut(s)	97, 279
BtsIMutI	CAGTG	3 cut(s)	97, 279, 655
Cac8I	GCNNGC	4 cut(s)	104, 564, 613, 617
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	1 cut(s)	621
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	788
ClaI	ATCGAT	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	326, 589
CviAII	CATG	2 cut(s)	700, 706
CviQI	GTAC	2 cut(s)	326, 589
DdeI	CTNAG	3 cut(s)	180, 186, 285
DpnI	GATC	2 cut(s)	491, 746
DpnII	GATC	2 cut(s)	489, 744
Eam1104I	CTCTTC	2 cut(s)	356, 381
EarI	CTCTTC	2 cut(s)	356, 381
Eco130I	CCWWGG	2 cut(s)	107, 690
Eco147I	AGGCCT	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	836
Eco57I	CTGAAG	2 cut(s)	555, 588
EcoRII	CCWGG	4 cut(s)	88, 621, 676, 790
EcoT14I	CCWWGG	2 cut(s)	107, 690
ErhI	CCWWGG	2 cut(s)	107, 690
FaeI	CATG	2 cut(s)	703, 709
FaiI	YATR	7 cut(s)	300, 371, 417, 701, 707, 737, 868
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	2 cut(s)	699, 705
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	129, 155, 498, 501, 519
FokI	GGATG	4 cut(s)	266, 356, 707, 764
Fsp4HI	GCNGC	5 cut(s)	129, 155, 498, 501, 519
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	5 cut(s)	129, 155, 498, 501, 519
HaeII	RGCGCY	1 cut(s)	622
HaeIII	GGCC	3 cut(s)	296, 626, 790
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	703, 709
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	3 cut(s)	39, 634, 765
HindII	GTYRAC	3 cut(s)	39, 634, 765
HinfI	GANTC	8 cut(s)	35, 220, 289, 436, 581, 718, 820, 845
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	4 cut(s)	39, 326, 634, 765
Hpy188I	TCNGA	4 cut(s)	119, 288, 667, 749
Hpy188III	TCNNGA	2 cut(s)	433, 824
Hpy8I	GTNNAC	4 cut(s)	39, 326, 634, 765
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	6 cut(s)	25, 46, 563, 733, 821, 856
HpyCH4III	ACNGT	2 cut(s)	43, 650
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	5 cut(s)	154, 215, 497, 503, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 154, 239, 410, 848
HpyF3I	CTNAG	3 cut(s)	180, 186, 285
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	2 cut(s)	703, 709
HspAI	GCGC	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	489, 744
LmnI	GCTCC	2 cut(s)	391, 749
Lsp1109I	GCAGC	5 cut(s)	140, 166, 487, 509, 530
LweI	GCATC	3 cut(s)	224, 244, 334
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	3 cut(s)	95, 365, 715
MalI	GATC	2 cut(s)	491, 746
MboI	GATC	2 cut(s)	489, 744
MboII	GAAGA	6 cut(s)	373, 398, 484, 556, 652, 766
MluCI	AATT	3 cut(s)	224, 332, 856
MlyI	GAGTC	4 cut(s)	44, 430, 590, 712
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	70, 382, 504, 568, 636, 845
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	4 cut(s)	90, 623, 678, 792
MvaI	CCWGG	4 cut(s)	90, 623, 678, 792
MwoI	GCNNNNNNNGC	5 cut(s)	145, 154, 239, 410, 848
NdeII	GATC	2 cut(s)	489, 744
NlaIII	CATG	2 cut(s)	703, 709
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	3 cut(s)	95, 365, 715
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	220, 289, 820, 845
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	5 cut(s)	130, 156, 499, 502, 520
PleI	GAGTC	4 cut(s)	43, 430, 589, 712
PpsI	GAGTC	4 cut(s)	43, 430, 589, 712
Psp6I	CCWGG	4 cut(s)	88, 621, 676, 790
PspGI	CCWGG	4 cut(s)	88, 621, 676, 790
PspPI	GGNCC	1 cut(s)	788
PstNI	CAGNNNCTG	1 cut(s)	797
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	327, 590
RsaNI	GTAC	2 cut(s)	326, 589
RseI	CAYNNNNRTG	1 cut(s)	704
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	5 cut(s)	129, 155, 498, 501, 519
Sau3AI	GATC	2 cut(s)	489, 744
Sau96I	GGNCC	1 cut(s)	788
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	4 cut(s)	44, 430, 590, 712
ScrFI	CCNGG	4 cut(s)	90, 623, 678, 792
SfaNI	GCATC	3 cut(s)	224, 244, 334
SfcI	CTRYAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	704
Sse9I	AATT	3 cut(s)	224, 332, 856
SseBI	AGGCCT	1 cut(s)	296
SspMI	CTAG	1 cut(s)	26
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	88, 621, 676, 790
StyI	CCWWGG	2 cut(s)	107, 690
TaaI	ACNGT	2 cut(s)	43, 650
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	6 cut(s)	38, 218, 306, 432, 729, 823
TasI	AATT	3 cut(s)	224, 332, 856
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	4 cut(s)	220, 289, 820, 845
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	104, 286, 655
TseFI	GTSAC	3 cut(s)	95, 365, 715
TseI	GCWGC	5 cut(s)	128, 154, 497, 500, 518
Tsp45I	GTSAC	3 cut(s)	95, 365, 715
TspDTI	ATGAA	3 cut(s)	497, 752, 766
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	104, 286, 655
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 697
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.