RLG00000021837

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008213
Physical Location & Seq
Reverse (-)
78714908 .. 78716355
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021837

Sequence Viewer

Length: 774 bp
ATGGGTCTAGTATTCGGCTGTTTGCAAGTGAAGGAGTCAAAGGTTGCTGTGAGGGAACATTTTGGTAAGTTTGATGATGCGCTTGAACCAGGTATTCACTGCTTGCCTTGGTGTTTTGGGTACAAGATAGCTGGTGAGGTATCACTGCGTGTGCGACAGCTCGATGTTGAATGTGAAACCAAGACTAAGGATAATGTATTTGTCAATGTGGTTGCATCTATTCAGTTTCGTGCATTACCGGAAAAAGTAGAGGATGCTTTCTATAAGCTAACTAACGCCAACGAGCAGATTCAAGCCTATGCTTTTGATGTTATCAGGGCAAGTGTACCCAAGCTGGAGTTGGATAATGTCTTTGAGCAGAAGAGTGATATAGCAAAAGTCGTTGAAAAGGAGCTTGCAAAGGCAATGTCTGCTTATGGTTTCGAAATAGTCCAGACCCTTATTGTTGATATTGTGCCTGATGATCGTGTCAAGAGAGCGATGAATGAGATCAATGTAGCTGCAAGACTGAGGGTTGCTGCAATGGAAAAGGCTGAAGCAGAAAAAATTTTACAGGTCAAGAGAGCTGAAGCAGAAGCAGAGTCCAAGTACTTAGCAGGGCTTGGGATAGCTCGCCAGCGCCAGGCCATTGTTGACGGGCTGAGGAATAGTGTTGAGATCGGAGCATTATCAAAGTCATCATCCGTTTTCATCCCCCACGGGCCAGGTGCTGTGAGAGACGTTGCTTCGCAGATTCGAGAGGGTCTCCTTCAACCCGATTCTGCTCAAAATTGA

Protein Analysis

258

Amino Acids

28.39

Weight (kDa)

5.79

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 182 9.1e-29 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 2 cut(s) 555, 588
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 3 cut(s) 122, 327, 590
AfiI CCNNNNNNNGG 1 cut(s) 622
AgsI TTSAA 5 cut(s) 86, 170, 293, 386, 752
AjnI CCWGG 3 cut(s) 88, 621, 703
AluBI AGCT 8 cut(s) 131, 160, 268, 334, 394, 500, 566, 611
AluI AGCT 8 cut(s) 131, 160, 268, 334, 394, 500, 566, 611
Alw26I GTCTC 2 cut(s) 711, 749
AlwNI CAGNNNCTG 1 cut(s) 710
AoxI GGCC 2 cut(s) 624, 701
ApeKI GCWGC 2 cut(s) 500, 518
ApoI RAATTY 1 cut(s) 546
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspLEI GCGC 2 cut(s) 82, 621
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 1 cut(s) 146
AsuII TTCGAA 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 487, 505
BciT130I CCWGG 3 cut(s) 90, 623, 705
BcoDI GTCTC 2 cut(s) 711, 749
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 622
BisI GCNGC 2 cut(s) 501, 519
BlsI GCNGC 2 cut(s) 502, 520
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 3 cut(s) 90, 623, 705
BmgT120I GGNCC 1 cut(s) 701
BmrFI CCNGG 3 cut(s) 90, 623, 705
BmsI GCATC 3 cut(s) 67, 224, 244
BplI GAGNNNNNCTC 2 cut(s) 729, 761
BpmI CTGGAG 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 641
Bpu14I TTCGAA 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 2 cut(s) 107, 697
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse3DI GCAATG 2 cut(s) 411, 528
BseBI CCWGG 3 cut(s) 90, 623, 705
BseDI CCNNGG 2 cut(s) 107, 697
BseGI GGATG 3 cut(s) 259, 680, 690
BseLI CCNNNNNNNGG 1 cut(s) 622
BseMI GCAATG 2 cut(s) 411, 528
BseMII CTCAG 2 cut(s) 500, 632
BseXI GCAGC 2 cut(s) 487, 505
BshFI GGCC 2 cut(s) 626, 703
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 622
BsmAI GTCTC 2 cut(s) 711, 749
BsmBI CGTCTC 1 cut(s) 711
BsnI GGCC 2 cut(s) 626, 703
Bso31I GGTCTC 1 cut(s) 749
Bsp119I TTCGAA 1 cut(s) 423
Bsp143I GATC 3 cut(s) 463, 489, 657
BspANI GGCC 2 cut(s) 626, 703
BspCNI CTCAG 2 cut(s) 501, 633
BspT104I TTCGAA 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 2 cut(s) 411, 528
BssECI CCNNGG 2 cut(s) 107, 697
BssMI GATC 3 cut(s) 463, 489, 657
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 3 cut(s) 90, 623, 705
Bst6I CTCTTC 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 4 cut(s) 104, 396, 613, 617
BstDEI CTNAG 4 cut(s) 186, 509, 592, 641
BstDSI CCRYGG 1 cut(s) 697
BstF5I GGATG 3 cut(s) 259, 680, 690
BstH2I RGCGCY 1 cut(s) 622
BstHHI GCGC 2 cut(s) 82, 621
BstKTI GATC 3 cut(s) 466, 492, 660
BstMAI GTCTC 2 cut(s) 711, 749
BstMBI GATC 3 cut(s) 463, 489, 657
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 3 cut(s) 90, 623, 705
BstSCI CCNGG 3 cut(s) 88, 621, 703
BstV1I GCAGC 2 cut(s) 487, 505
BsuRI GGCC 2 cut(s) 626, 703
BtgI CCRYGG 1 cut(s) 697
BtgZI GCGATG 1 cut(s) 494
BtsCI GGATG 3 cut(s) 259, 680, 690
BtsI GCAGTG 2 cut(s) 97, 143
BtsIMutI CAGTG 2 cut(s) 97, 143
Cac8I GCNNGC 4 cut(s) 104, 396, 613, 617
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 2 cut(s) 82, 621
Cfr13I GGNCC 1 cut(s) 701
CsiI ACCWGGT 1 cut(s) 88
Csp6I GTAC 3 cut(s) 121, 326, 589
CviQI GTAC 3 cut(s) 121, 326, 589
DdeI CTNAG 4 cut(s) 186, 509, 592, 641
DpnI GATC 3 cut(s) 465, 491, 659
DpnII GATC 3 cut(s) 463, 489, 657
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 749
Eco57I CTGAAG 2 cut(s) 555, 588
EcoRII CCWGG 3 cut(s) 88, 621, 703
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 711
FaiI YATR 4 cut(s) 264, 300, 371, 417
Fnu4HI GCNGC 2 cut(s) 501, 519
FokI GGATG 3 cut(s) 266, 667, 677
Fsp4HI GCNGC 2 cut(s) 501, 519
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 81, 620
GluI GCNGC 2 cut(s) 501, 519
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 1 cut(s) 622
HaeIII GGCC 2 cut(s) 626, 703
HapII CCGG 1 cut(s) 239
HhaI GCGC 2 cut(s) 82, 621
Hin6I GCGC 2 cut(s) 80, 619
HinP1I GCGC 2 cut(s) 80, 619
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 5 cut(s) 35, 289, 581, 733, 758
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 326, 634
Hpy188I TCNGA 1 cut(s) 662
Hpy188III TCNNGA 4 cut(s) 433, 472, 559, 737
Hpy8I GTNNAC 2 cut(s) 326, 634
HpyAV CCTTC 2 cut(s) 25, 758
HpyCH4IV ACGT 1 cut(s) 720
HpyCH4V TGCA 6 cut(s) 25, 215, 233, 398, 503, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 4 cut(s) 186, 509, 592, 641
HpySE526I ACGT 1 cut(s) 720
HspAI GCGC 2 cut(s) 80, 619
Kzo9I GATC 3 cut(s) 463, 489, 657
LmnI GCTCC 2 cut(s) 391, 662
Lsp1109I GCAGC 2 cut(s) 487, 505
LweI GCATC 3 cut(s) 67, 224, 244
MabI ACCWGGT 1 cut(s) 88
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 720
MalI GATC 3 cut(s) 465, 491, 659
MboI GATC 3 cut(s) 463, 489, 657
MboII GAAGA 1 cut(s) 373
MluCI AATT 2 cut(s) 546, 769
MlyI GAGTC 2 cut(s) 44, 590
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 6 cut(s) 45, 130, 244, 504, 636, 733
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 3 cut(s) 90, 623, 705
MvaI CCWGG 3 cut(s) 90, 623, 705
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeII GATC 3 cut(s) 463, 489, 657
NspV TTCGAA 1 cut(s) 423
PfeI GAWTC 3 cut(s) 289, 733, 758
PkrI GCNGC 2 cut(s) 502, 520
PleI GAGTC 2 cut(s) 43, 589
PpsI GAGTC 2 cut(s) 43, 589
Psp6I CCWGG 3 cut(s) 88, 621, 703
PspGI CCWGG 3 cut(s) 88, 621, 703
PspPI GGNCC 1 cut(s) 701
PstNI CAGNNNCTG 1 cut(s) 710
RsaI GTAC 3 cut(s) 122, 327, 590
RsaNI GTAC 3 cut(s) 121, 326, 589
SatI GCNGC 2 cut(s) 501, 519
Sau3AI GATC 3 cut(s) 463, 489, 657
Sau96I GGNCC 1 cut(s) 701
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 2 cut(s) 44, 590
ScrFI CCNGG 3 cut(s) 90, 623, 705
SexAI ACCWGGT 1 cut(s) 88
SfaNI GCATC 3 cut(s) 67, 224, 244
SfuI TTCGAA 1 cut(s) 423
Sse9I AATT 2 cut(s) 546, 769
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 88, 621, 703
StyI CCWWGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 723
TaqI TCGA 3 cut(s) 162, 423, 736
TasI AATT 2 cut(s) 546, 769
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 3 cut(s) 289, 733, 758
TscAI CASTG 2 cut(s) 104, 150
TseI GCWGC 2 cut(s) 500, 518
TspDTI ATGAA 2 cut(s) 497, 679
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 2 cut(s) 104, 150
XapI RAATTY 1 cut(s) 546
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.