Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Forward (+)

2296857 .. 2297986

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTCAATCACTCGGTTGTGTTCAAGTGAAGCAGTCAAATGTTGCTGTGAGGGAACAATTTGGGAAGTTTGATGGTGTGCTTGAACCAGGATTGCATTGCATGCCCTGGTGTTTCGGGTACAAGGTAGCTGGTGATCTCTCACTGCGCGTGCGACAACTTCAAGTTCATTGCGAAAGCAAGACCAAGGATAATATGTTTGTGAAAGTGGCTGCATCGATTCACTATCGCCCCTTTCCAGACAAGATACCGGATGCTTTCTACAAGCTCTTGAATGCCGACTCACAGATTCGGGCTTATGTGTTTGATGTTATTAGGGAAACTGTGCCGAAATTGGAGCTTGATACCGTCTTTGAGCAGAAAAGTGACATAGCAAAAGCTGTTCAAAAGGAACTTGCAAAGGCTATGTATGATTATGGTTTTGAAATAGTCCAGACCCTGATTGTGGATATTGCACCACATATTGTAGTGATGAATGCGATGCATGAGATCAATGCAGCTGCAAGGAAGAGACTGGTGGCGGAAGAGAAGGGGGAAGAAGAGAAAATCCTGAAGATCAAGCGAGCGGAAGGAGAGGCAGAGTCCAGGCACTTGGTAGGGCTCGGCATAGCGCGCCAGAGCCAGGCCATTATTGGAGGGCTGAAGGACAGCGTGCTCGACTGTTTTACAGAGATTATGCTAAAGAGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

231

Amino Acids

25.82

Weight (kDa)

7.65

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	566
AccII	CGCG	2 cut(s)	150, 613
AciI	CCGC	2 cut(s)	521, 566
AcuI	CTGAAG	2 cut(s)	572, 662
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	445, 622
AgsI	TTSAA	6 cut(s)	26, 86, 164, 274, 386, 425
AjnI	CCWGG	4 cut(s)	88, 107, 584, 621
AluBI	AGCT	5 cut(s)	131, 268, 340, 380, 500
AluI	AGCT	5 cut(s)	131, 268, 340, 380, 500
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	439
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	3 cut(s)	212, 497, 500
AspLEI	GCGC	3 cut(s)	150, 613, 615
AsuHPI	GGTGA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	3 cut(s)	199, 487, 509
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	4 cut(s)	90, 109, 586, 623
BcoDI	GTCTC	1 cut(s)	505
BisI	GCNGC	3 cut(s)	213, 498, 501
BlsI	GCNGC	3 cut(s)	214, 499, 502
Bme1390I	CCNGG	4 cut(s)	90, 109, 586, 623
BmrFI	CCNGG	4 cut(s)	90, 109, 586, 623
BmsI	GCATC	3 cut(s)	224, 244, 471
Bsa29I	ATCGAT	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	107, 186
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 622
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	2 cut(s)	97, 169
BseBI	CCWGG	4 cut(s)	90, 109, 586, 623
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	107, 186
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	445, 622
BseMI	GCAATG	2 cut(s)	97, 169
BseNI	ACTGG	1 cut(s)	519
BsePI	GCGCGC	1 cut(s)	611
BseXI	GCAGC	3 cut(s)	199, 487, 509
Bsh1236I	CGCG	2 cut(s)	150, 613
BshFI	GGCC	1 cut(s)	626
BshVI	ATCGAT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	445, 622
BsmAI	GTCTC	1 cut(s)	505
BsmI	GAATGC	2 cut(s)	280, 481
BsnI	GGCC	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	603, 657
Bsp143I	GATC	3 cut(s)	136, 489, 555
BspACI	CCGC	2 cut(s)	521, 566
BspANI	GGCC	1 cut(s)	626
BspDI	ATCGAT	1 cut(s)	218
BspFNI	CGCG	2 cut(s)	150, 613
BsrBI	CCGCTC	1 cut(s)	566
BsrDI	GCAATG	2 cut(s)	97, 169
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	107, 186
BssHII	GCGCGC	1 cut(s)	611
BssMI	GATC	3 cut(s)	136, 489, 555
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	4 cut(s)	90, 109, 586, 623
Bst4CI	ACNGT	3 cut(s)	325, 349, 662
Bst6I	CTCTTC	3 cut(s)	503, 519, 534
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	5 cut(s)	104, 152, 564, 613, 653
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	150, 613
BstHHI	GCGC	3 cut(s)	150, 613, 615
BstKTI	GATC	3 cut(s)	139, 492, 558
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	136, 489, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 612
BstNI	CCWGG	4 cut(s)	90, 109, 586, 623
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	4 cut(s)	88, 107, 584, 621
BstUI	CGCG	2 cut(s)	150, 613
BstV1I	GCAGC	3 cut(s)	199, 487, 509
BstXI	CCANNNNNNTGG	1 cut(s)	592
Bsu15I	ATCGAT	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	626
BsuTUI	ATCGAT	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	5 cut(s)	104, 152, 564, 613, 653
CaiI	CAGNNNCTG	1 cut(s)	439
CfoI	GCGC	3 cut(s)	150, 613, 615
ClaI	ATCGAT	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	103, 485
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	3 cut(s)	138, 491, 557
DpnII	GATC	3 cut(s)	136, 489, 555
Eam1104I	CTCTTC	3 cut(s)	503, 519, 534
EarI	CTCTTC	3 cut(s)	503, 519, 534
EciI	GGCGGA	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	603
Eco57I	CTGAAG	2 cut(s)	572, 662
EcoRII	CCWGG	4 cut(s)	88, 107, 584, 621
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	106, 488
FatI	CATG	2 cut(s)	102, 484
Fnu4HI	GCNGC	3 cut(s)	213, 498, 501
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	3 cut(s)	213, 498, 501
GlaI	GCGC	3 cut(s)	149, 612, 614
GluI	GCNGC	3 cut(s)	213, 498, 501
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	3 cut(s)	150, 613, 615
Hin1II	CATG	2 cut(s)	106, 488
Hin6I	GCGC	3 cut(s)	148, 611, 613
HinP1I	GCGC	3 cut(s)	148, 611, 613
HinfI	GANTC	4 cut(s)	220, 281, 289, 581
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	146
Hpy188III	TCNNGA	4 cut(s)	239, 271, 433, 550
HpyAV	CCTTC	3 cut(s)	523, 563, 637
HpyCH4III	ACNGT	3 cut(s)	325, 349, 662
HpyCH4V	TGCA	8 cut(s)	97, 102, 215, 398, 455, 484, 497, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 612
Hsp92II	CATG	2 cut(s)	106, 488
HspAI	GCGC	3 cut(s)	148, 611, 613
Kzo9I	GATC	3 cut(s)	136, 489, 555
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	3 cut(s)	199, 487, 509
LweI	GCATC	3 cut(s)	224, 244, 471
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	138, 491, 557
MbiI	CCGCTC	1 cut(s)	566
MboI	GATC	3 cut(s)	136, 489, 555
MboII	GAAGA	5 cut(s)	520, 536, 548, 551, 565
MhlI	GDGCHC	2 cut(s)	603, 657
MluCI	AATT	2 cut(s)	59, 332
MlyI	GAGTC	2 cut(s)	275, 590
MnlI	CCTC	4 cut(s)	45, 568, 629, 678
Mph1103I	ATGCAT	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	4 cut(s)	90, 109, 586, 623
Mva1269I	GAATGC	2 cut(s)	280, 481
MvaI	CCWGG	4 cut(s)	90, 109, 586, 623
MvnI	CGCG	2 cut(s)	150, 613
MwoI	GCNNNNNNNGC	2 cut(s)	103, 612
NdeII	GATC	3 cut(s)	136, 489, 555
NlaIII	CATG	2 cut(s)	106, 488
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	106
PauI	GCGCGC	1 cut(s)	611
PctI	GAATGC	2 cut(s)	280, 481
PfeI	GAWTC	2 cut(s)	220, 289
PkrI	GCNGC	3 cut(s)	214, 499, 502
PleI	GAGTC	2 cut(s)	275, 589
PpsI	GAGTC	2 cut(s)	275, 589
Psp6I	CCWGG	4 cut(s)	88, 107, 584, 621
PspGI	CCWGG	4 cut(s)	88, 107, 584, 621
PstNI	CAGNNNCTG	1 cut(s)	439
PteI	GCGCGC	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SatI	GCNGC	3 cut(s)	213, 498, 501
Sau3AI	GATC	3 cut(s)	136, 489, 555
SchI	GAGTC	2 cut(s)	275, 590
ScrFI	CCNGG	4 cut(s)	90, 109, 586, 623
SduI	GDGCHC	2 cut(s)	603, 657
SetI	ASST	6 cut(s)	129, 133, 270, 342, 382, 502
SfaNI	GCATC	3 cut(s)	224, 244, 471
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	59, 332
SsiI	CCGC	2 cut(s)	521, 566
StyD4I	CCNGG	4 cut(s)	88, 107, 584, 621
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	325, 349, 662
TaqI	TCGA	2 cut(s)	218, 657
TasI	AATT	2 cut(s)	59, 332
TfiI	GAWTC	2 cut(s)	220, 289
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	3 cut(s)	212, 497, 500
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	158, 488
TspRI	CASTG	1 cut(s)	150
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.