Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Forward (+)

3088869 .. 3090944

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1047000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCGATTAAATTGTATGACAAATTTACGGTGTAAGCGTTCGAGCCTAATGGGTCAAGCACTTGGTTGTGTTCAAGTGAAGCAGTCAAACGTTGCCGTGAAGGTGCATTTTGGGAAATTTGATGATGTGCTTGAACCAGGATGCCACTGCATGCCCTGGTGTTTCGGATACAAGGTATCCGGTGAGATCTCTCTGCGTGTGCGGCAACTTGAAGTTCAATGTGAAACCAAAACCAAGGATAATGTGTTTGTGAAAATAGTTGCATCGATTCAATATCGCGCCTTGCCACATAAGATGCGGAAAGCTATCTACAAGCTCTCAAACGCCAAATCACAGATTCGGGCCTACGCGTTTGATATTATCAGGGCAAGTGTGCCGAAATTTGAGCTTGATGCTGTCTTTGAGCAGAAGAGTGACCTAGCGAAAGCTGTTGACGAGGAGCTTGCAAAGGCAATGTCTTCTTATGGTTTCGAAATAGTCCAGACCCTTATTGTGGATATCGTTCCAGATGTTCATGTGAAGAGAGCGATAAATGAGATCAATGCAGCTACAAGGCAGAGACTGGTGGCGAAAGAAAAGGCTGAAGCGGAGAAAATCCTACAGATCAAGCGAGCAGAAGGAGAGGCAGAGGCCAAGTACTTGGTAGGGCTTGGCATAGCACGCCAGCGGCAGGCCATTGTTGACGGGCTGAGAGACAGTGTGCTTGTCTTCTCCGAAAATGTTCCCGGAACAACAGCCAAGGATGTCATGGACATGGTTTTGGTGACTCAATACTTCGACACCATGAAGGAGATTGGTGCATCCTCAAAATCATCGTCTGTTATCATCCCGCATGGGCCAGGTGCAGTCAAGGACATTGTTTTGCAGATTCGAGAGGGTCTCCTTCAAGCCGATTATGCTAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

303

Amino Acids

33.61

Weight (kDa)

9.03

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	25 - 198	2.1e-29	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	279, 350
AciI	CCGC	5 cut(s)	202, 298, 587, 667, 830
AclI	AACGTT	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	22, 116, 380
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	493, 670
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	6 cut(s)	74, 134, 212, 218, 272, 887
AjnI	CCWGG	3 cut(s)	136, 155, 838
AluBI	AGCT	6 cut(s)	305, 316, 388, 428, 442, 548
AluI	AGCT	6 cut(s)	305, 316, 388, 428, 442, 548
Alw26I	GTCTC	3 cut(s)	553, 687, 884
AlwNI	CAGNNNCTG	1 cut(s)	562
AoxI	GGCC	4 cut(s)	342, 630, 672, 836
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	3 cut(s)	22, 116, 380
ArsI	GACNNNNNNTTYG	4 cut(s)	440, 472, 800, 832
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	342, 836
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	2 cut(s)	194, 775
AsuII	TTCGAA	1 cut(s)	471
BbsI	GAAGAC	2 cut(s)	450, 700
BbvI	GCAGC	1 cut(s)	557
BceAI	ACGGC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	3 cut(s)	138, 157, 840
BciVI	GTATCC	2 cut(s)	161, 187
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	3 cut(s)	553, 687, 884
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	599
BfuI	GTATCC	2 cut(s)	161, 187
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	203, 546, 668
BlsI	GCNGC	3 cut(s)	204, 547, 669
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	4 cut(s)	138, 157, 726, 840
BmgT120I	GGNCC	2 cut(s)	342, 836
BmrFI	CCNGG	4 cut(s)	138, 157, 726, 840
BmsI	GCATC	5 cut(s)	131, 272, 285, 382, 809
BpiI	GAAGAC	2 cut(s)	450, 700
BplI	GAGNNNNNCTC	2 cut(s)	864, 896
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	726
Bsa29I	ATCGAT	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	3 cut(s)	155, 234, 738
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 670
Bse1I	ACTGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	3 cut(s)	138, 157, 840
BseCI	ATCGAT	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	155, 234, 738
BseGI	GGATG	4 cut(s)	146, 748, 800, 825
BseLI	CCNNNNNNNGG	2 cut(s)	493, 670
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	557
BsgI	GTGCAG	1 cut(s)	864
Bsh1236I	CGCG	2 cut(s)	279, 350
BshFI	GGCC	4 cut(s)	344, 632, 674, 838
BshVI	ATCGAT	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	180, 726
BslI	CCNNNNNNNGG	2 cut(s)	493, 670
BsmAI	GTCTC	3 cut(s)	553, 687, 884
BsnI	GGCC	4 cut(s)	344, 632, 674, 838
Bso31I	GGTCTC	1 cut(s)	884
Bsp119I	TTCGAA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	186, 537, 603
BspACI	CCGC	5 cut(s)	202, 298, 587, 667, 830
BspANI	GGCC	4 cut(s)	344, 632, 674, 838
BspCNI	CTCAG	1 cut(s)	681
BspDI	ATCGAT	1 cut(s)	266
BspFNI	CGCG	2 cut(s)	279, 350
BspT104I	TTCGAA	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	3 cut(s)	155, 234, 738
BssMI	GATC	3 cut(s)	186, 537, 603
BssT1I	CCWWGG	2 cut(s)	234, 738
Bst2UI	CCWGG	3 cut(s)	138, 157, 840
Bst4CI	ACNGT	2 cut(s)	30, 698
Bst6I	CTCTTC	2 cut(s)	404, 515
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	6 cut(s)	152, 444, 612, 661, 665, 672
BstDEI	CTNAG	2 cut(s)	689, 900
BstF5I	GGATG	4 cut(s)	146, 748, 800, 825
BstFNI	CGCG	2 cut(s)	279, 350
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	189, 540, 606
BstMAI	GTCTC	3 cut(s)	553, 687, 884
BstMBI	GATC	3 cut(s)	186, 537, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 660, 896
BstNI	CCWGG	3 cut(s)	138, 157, 840
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	4 cut(s)	136, 155, 724, 838
BstSFI	CTRYAG	1 cut(s)	599
BstUI	CGCG	2 cut(s)	279, 350
BstV1I	GCAGC	1 cut(s)	557
BstV2I	GAAGAC	2 cut(s)	450, 700
BstX2I	RGATCY	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	266
BsuI	GTATCC	2 cut(s)	161, 187
BsuRI	GGCC	4 cut(s)	344, 632, 674, 838
BsuTUI	ATCGAT	1 cut(s)	266
BtsCI	GGATG	4 cut(s)	146, 748, 800, 825
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	145, 703
Cac8I	GCNNGC	6 cut(s)	152, 444, 612, 661, 665, 672
CaiI	CAGNNNCTG	1 cut(s)	562
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	342, 836
ClaI	ATCGAT	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	6 cut(s)	151, 515, 748, 754, 784, 833
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	2 cut(s)	689, 900
DpnI	GATC	3 cut(s)	188, 539, 605
DpnII	GATC	3 cut(s)	186, 537, 603
Eam1104I	CTCTTC	2 cut(s)	404, 515
EarI	CTCTTC	2 cut(s)	404, 515
Eco130I	CCWWGG	2 cut(s)	234, 738
Eco31I	GGTCTC	1 cut(s)	884
Eco32I	GATATC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	603
EcoRII	CCWGG	3 cut(s)	136, 155, 838
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	234, 738
ErhI	CCWWGG	2 cut(s)	234, 738
FaeI	CATG	6 cut(s)	154, 518, 751, 757, 787, 836
FatI	CATG	6 cut(s)	150, 514, 747, 753, 783, 832
FauI	CCCGC	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	203, 546, 668
FokI	GGATG	4 cut(s)	153, 755, 787, 812
Fsp4HI	GCNGC	3 cut(s)	203, 546, 668
FspBI	CTAG	1 cut(s)	419
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	3 cut(s)	203, 546, 668
HaeIII	GGCC	4 cut(s)	344, 632, 674, 838
HapII	CCGG	2 cut(s)	180, 726
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	6 cut(s)	154, 518, 751, 757, 787, 836
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	2 cut(s)	433, 682
HindII	GTYRAC	2 cut(s)	433, 682
HinfI	GANTC	4 cut(s)	268, 337, 766, 868
HpaII	CCGG	2 cut(s)	180, 726
HphI	GGTGA	2 cut(s)	194, 775
Hpy166II	GTNNAC	2 cut(s)	433, 682
Hpy188I	TCNGA	2 cut(s)	167, 715
Hpy188III	TCNNGA	3 cut(s)	481, 506, 872
Hpy8I	GTNNAC	2 cut(s)	433, 682
HpyAV	CCTTC	4 cut(s)	94, 611, 781, 893
HpyCH4III	ACNGT	2 cut(s)	30, 698
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	8 cut(s)	106, 150, 263, 446, 545, 800, 845, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 660, 896
HpyF3I	CTNAG	2 cut(s)	689, 900
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	6 cut(s)	154, 518, 751, 757, 787, 836
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	186, 537, 603
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	5 cut(s)	131, 272, 285, 382, 809
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	413, 763
MalI	GATC	3 cut(s)	188, 539, 605
MboI	GATC	3 cut(s)	186, 537, 603
MboII	GAAGA	4 cut(s)	421, 450, 532, 700
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	4 cut(s)	10, 22, 116, 380
MluI	ACGCGT	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	760
MnlI	CCTC	5 cut(s)	430, 616, 622, 814, 868
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	2 cut(s)	180, 726
MspR9I	CCNGG	4 cut(s)	138, 157, 726, 840
MvaI	CCWGG	3 cut(s)	138, 157, 840
MvnI	CGCG	2 cut(s)	279, 350
MwoI	GCNNNNNNNGC	3 cut(s)	202, 660, 896
NciI	CCSGG	1 cut(s)	726
NdeII	GATC	3 cut(s)	186, 537, 603
NlaIII	CATG	6 cut(s)	154, 518, 751, 757, 787, 836
NmuCI	GTSAC	2 cut(s)	413, 763
NspI	RCATGY	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	471
PaeI	GCATGC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	268, 337, 868
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	3 cut(s)	204, 547, 669
PleI	GAGTC	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	760
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	136, 155, 838
PspGI	CCWGG	3 cut(s)	136, 155, 838
PspPI	GGNCC	2 cut(s)	342, 836
PstNI	CAGNNNCTG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	203, 546, 668
Sau3AI	GATC	3 cut(s)	186, 537, 603
Sau96I	GGNCC	2 cut(s)	342, 836
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	1 cut(s)	760
ScrFI	CCNGG	4 cut(s)	138, 157, 726, 840
SfaNI	GCATC	5 cut(s)	131, 272, 285, 382, 809
SfcI	CTRYAG	1 cut(s)	599
SfuI	TTCGAA	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	752
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	4 cut(s)	10, 22, 116, 380
SsiI	CCGC	5 cut(s)	202, 298, 587, 667, 830
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	4 cut(s)	136, 155, 724, 838
StyI	CCWWGG	2 cut(s)	234, 738
TaaI	ACNGT	2 cut(s)	30, 698
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	5 cut(s)	41, 266, 471, 777, 871
TasI	AATT	4 cut(s)	10, 22, 116, 380
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	2 cut(s)	205, 670
TfiI	GAWTC	3 cut(s)	268, 337, 868
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	152, 703
TseFI	GTSAC	2 cut(s)	413, 763
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	2 cut(s)	413, 763
TspDTI	ATGAA	2 cut(s)	503, 800
TspRI	CASTG	2 cut(s)	152, 703
XapI	RAATTY	3 cut(s)	22, 116, 380
XceI	RCATGY	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	1 cut(s)	419
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.