Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Reverse (-)

66677425 .. 66678843

Gene Structure 1419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0537500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGAGGGGAAGAGAAAGAAAGAGAAAAGCAAAGGGTGATTATGACTTGGTAGACCGAATCAGTGCGTTGCCTGATGAACTTCTCTCCATTATAGTCCATTCCTTGCCTGTTAAGGAAGCGGCAGCTACTAGTATTCTTTCCAGGCGATGGAAGTATATATGGAAATATTCAACAAATCTCGACTTTTCTGATGCTAGGTTTATTGTTGGTAAAGGTTTTCGCGGGTTCCTTCAACGACAACGACATGATAATCATCAAAATAGCCAGAGATATGTCAATTCGGTAAATCGTGCGATTGAACAATATAGTAACCTAACCGTCGAACGATTCAGGGCTTGCTTTATTATAGATCCTCGGTATACAGGGGACATTGTTAATTGGCTTCAATTTGCTATGAATAAGAAAGTCGAAATATTGGAGTTAGAGTTCTACATAGATTCTGGTCTTGCAGGTACGTATCCTATATATCCTTTTCCCCACAAACTATTAGGTATTGGAGAAGAGTCTGAGCTCCAGAACTCGTATTCTTCCGACCCTCCAAGTCATCAATCTTGTGGATACAATGTTGGATTTAAGTTCCTCAAAGTTCTCCATTTTCGATGTGTTGATGTGACTCAAGAAGTCCTTGAGTACTTCTTGTCGAACTGTGCAGCTCTTGAACGATTAACTGTGAATGCTGCTCACAATTTGGTGGATCTGAGAGTTGTTGGCACCTCGATTGCCTTGAAGCATTTAACATTAATAGATTGTTCTCGCCTTGAAAGTATTGAGGTTTGTGATGCAAAGCTTGTCTCTTTCCATCTTTCTGGGAGAGAGGTGATAAGACTGCTTCTCACTAAAGTACCGTTGCTTGTTGACGTATCCTACATGACCTCAGTGAGATCAATAAGGCTTCTCCTCACCCAACTTTCATTTTGTATTTCCCAGTTAGAGATTCTCAGTTTAGATATAAATGGAGGGGACAACAATCGGAATCATGTATTTCCTATATTATCAAATCTCAGGCACTTAGAATTAAAATTTGATCCAGACTGTGAGAGTGATCTTTGTAATTTTACTCGTTTCATTGAGGCATCTCCCCACTTGCATAGACTTGTGTTGAAGTTGCAGAACTGTACGCGTACGAGGCCTGAAATATGCAGGAAGATACGTAGAATTGCCAAATTCCCCCGTCATTACCTCAAGGTAGTAGAGATAGTAGGGTATCGTGGGAGTCATTGTCATGTTCAACATGCACTATACTTTGTAAAGAAGGCTGTCGTATTGGAGAAAATTGTTATTGATCCTGTCCGACGTTGGGGTGCTTGGCTCGATAGAGATTTTAAAGAAGTGAAAGAGGAAAACGACGCAAGATATCATGCTAATCGTCATCTCAGAAGAAAAGTGCCTTCAACAGTTGAATTTGTATGCCTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

472

Amino Acids

54.76

Weight (kDa)

9.21

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 56	1.7e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	122 - 469	2.6e-35	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	126 - 263	4.5e-08	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	2 cut(s)	51, 359
AccII	CGCG	2 cut(s)	222, 1120
AciI	CCGC	2 cut(s)	119, 222
AclWI	GGATC	4 cut(s)	344, 702, 1019, 1277
AcsI	RAATTY	3 cut(s)	1019, 1163, 1400
AfaI	GTAC	5 cut(s)	454, 632, 843, 1117, 1123
AfiI	CCNNNNNNNGG	2 cut(s)	147, 1297
AflIII	ACRYGT	1 cut(s)	1118
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	140
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	125, 511, 653, 787
AluI	AGCT	4 cut(s)	125, 511, 653, 787
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	796
AlwI	GGATC	4 cut(s)	344, 702, 1019, 1277
AoxI	GGCC	1 cut(s)	1127
ApeKI	GCWGC	3 cut(s)	122, 650, 677
ApoI	RAATTY	3 cut(s)	1019, 1163, 1400
AseI	ATTAAT	1 cut(s)	740
AsuHPI	GGTGA	3 cut(s)	47, 829, 892
BaeI	ACNNNNGTAYC	2 cut(s)	825, 858
BanI	GGYRCC	1 cut(s)	710
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	134, 662, 664
BccI	CCATC	2 cut(s)	141, 807
BciT130I	CCWGG	1 cut(s)	142
BciVI	GTATCC	3 cut(s)	468, 551, 871
BcoDI	GTCTC	1 cut(s)	796
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	2 cut(s)	129, 195
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	3 cut(s)	468, 551, 871
BisI	GCNGC	4 cut(s)	120, 123, 651, 678
BlsI	GCNGC	4 cut(s)	121, 124, 652, 679
BmcAI	AGTACT	1 cut(s)	632
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	227, 712
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	919
BmsI	GCATC	3 cut(s)	181, 769, 1082
BmuI	ACTGGG	1 cut(s)	919
BpmI	CTGGAG	1 cut(s)	497
BpuEI	CTTGAG	3 cut(s)	600, 647, 1166
BsaAI	YACGTR	2 cut(s)	456, 1151
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	4 cut(s)	410, 440, 1204, 1234
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 1297
Bse1I	ACTGG	1 cut(s)	925
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	147, 1297
BseMII	CTCAG	6 cut(s)	498, 689, 888, 952, 1015, 1387
BseNI	ACTGG	1 cut(s)	925
BseRI	GAGGAG	1 cut(s)	887
BseXI	GCAGC	3 cut(s)	134, 662, 664
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	2 cut(s)	222, 1120
BshFI	GGCC	1 cut(s)	1129
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	513
BsiWI	CGTACG	1 cut(s)	1121
BslFI	GGGAC	2 cut(s)	380, 974
BslI	CCNNNNNNNGG	2 cut(s)	147, 1297
BsmAI	GTCTC	1 cut(s)	796
BsmFI	GGGAC	2 cut(s)	380, 974
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	1129
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
BspACI	CCGC	2 cut(s)	119, 222
BspANI	GGCC	1 cut(s)	1129
BspCNI	CTCAG	6 cut(s)	499, 690, 887, 951, 1014, 1386
BspFNI	CGCG	2 cut(s)	222, 1120
BspHI	TCATGA	1 cut(s)	1415
BspLI	GGNNCC	2 cut(s)	227, 712
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	4 cut(s)	344, 702, 1019, 1277
BspT107I	GGYRCC	1 cut(s)	710
BsrI	ACTGG	1 cut(s)	925
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
BssNAI	GTATAC	1 cut(s)	360
Bst1107I	GTATAC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	7 cut(s)	319, 647, 670, 846, 1034, 1115, 1396
Bst6I	CTCTTC	2 cut(s)	4, 495
BstBAI	YACGTR	2 cut(s)	456, 1151
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	7 cut(s)	507, 698, 874, 938, 1001, 1009, 1373
BstFNI	CGCG	2 cut(s)	222, 1120
BstKTI	GATC	6 cut(s)	352, 697, 884, 1027, 1045, 1285
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
BstMWI	GCNNNNNNNGC	1 cut(s)	1126
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	1235
BstSCI	CCNGG	1 cut(s)	140
BstSNI	TACGTA	2 cut(s)	456, 1151
BstUI	CGCG	2 cut(s)	222, 1120
BstV1I	GCAGC	3 cut(s)	134, 662, 664
BstX2I	RGATCY	2 cut(s)	349, 694
BstXI	CCANNNNNNTGG	1 cut(s)	806
BstYI	RGATCY	2 cut(s)	349, 694
BstZ17I	GTATAC	1 cut(s)	360
BsuI	GTATCC	3 cut(s)	468, 551, 871
BsuRI	GGCC	1 cut(s)	1129
BtgZI	GCGATG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	67, 882
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	337
CciI	TCATGA	1 cut(s)	1415
CseI	GACGC	1 cut(s)	1355
Csp6I	GTAC	5 cut(s)	453, 631, 842, 1116, 1122
CviAII	CATG	7 cut(s)	245, 868, 977, 1223, 1232, 1358, 1416
CviQI	GTAC	5 cut(s)	453, 631, 842, 1116, 1122
DdeI	CTNAG	7 cut(s)	507, 698, 874, 938, 1001, 1009, 1373
DpnI	GATC	6 cut(s)	351, 696, 883, 1026, 1044, 1284
DpnII	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
DraI	TTTAAA	1 cut(s)	1324
Eam1104I	CTCTTC	2 cut(s)	4, 495
EarI	CTCTTC	2 cut(s)	4, 495
Ecl136II	GAGCTC	1 cut(s)	511
Eco105I	TACGTA	2 cut(s)	456, 1151
Eco147I	AGGCCT	1 cut(s)	1129
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	1355
Eco53kI	GAGCTC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	1355
EcoT38I	GRGCYC	1 cut(s)	513
FaeI	CATG	7 cut(s)	248, 871, 980, 1226, 1235, 1361, 1419
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	2 cut(s)	380, 974
FatI	CATG	7 cut(s)	244, 867, 976, 1222, 1231, 1357, 1415
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	2 cut(s)	51, 359
Fnu4HI	GCNGC	4 cut(s)	120, 123, 651, 678
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	4 cut(s)	120, 123, 651, 678
FspBI	CTAG	2 cut(s)	129, 195
GluI	GCNGC	4 cut(s)	120, 123, 651, 678
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	1129
HgaI	GACGC	1 cut(s)	1355
Hin1II	CATG	7 cut(s)	248, 871, 980, 1226, 1235, 1361, 1419
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	8 cut(s)	57, 327, 437, 503, 613, 934, 973, 1213
HphI	GGTGA	3 cut(s)	47, 829, 892
Hpy166II	GTNNAC	3 cut(s)	52, 360, 856
Hpy188I	TCNGA	7 cut(s)	190, 508, 532, 699, 972, 1292, 1376
Hpy188III	TCNNGA	6 cut(s)	179, 514, 617, 656, 1028, 1416
Hpy8I	GTNNAC	3 cut(s)	52, 360, 856
Hpy99I	CGWCG	3 cut(s)	323, 1296, 1349
HpyAV	CCTTC	3 cut(s)	239, 1246, 1398
HpyCH4III	ACNGT	7 cut(s)	319, 647, 670, 846, 1034, 1115, 1396
HpyCH4IV	ACGT	4 cut(s)	455, 858, 1150, 1294
HpyCH4V	TGCA	7 cut(s)	449, 650, 782, 1087, 1108, 1140, 1235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1126
HpyF3I	CTNAG	7 cut(s)	507, 698, 874, 938, 1001, 1009, 1373
HpySE526I	ACGT	4 cut(s)	455, 858, 1150, 1294
Hsp92II	CATG	7 cut(s)	248, 871, 980, 1226, 1235, 1361, 1419
Kzo9I	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	3 cut(s)	134, 662, 664
LweI	GCATC	3 cut(s)	181, 769, 1082
MaeI	CTAG	2 cut(s)	129, 195
MaeII	ACGT	4 cut(s)	455, 858, 1150, 1294
MaeIII	GTNAC	2 cut(s)	308, 610
MalI	GATC	6 cut(s)	351, 696, 883, 1026, 1044, 1284
MboI	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
MboII	GAAGA	5 cut(s)	21, 512, 519, 1156, 1389
MflI	RGATCY	2 cut(s)	349, 694
MhlI	GDGCHC	1 cut(s)	513
MluI	ACGCGT	1 cut(s)	1118
MlyI	GAGTC	3 cut(s)	512, 607, 1222
MmeI	TCCRAC	3 cut(s)	547, 555, 1315
MseI	TTAA	8 cut(s)	111, 375, 573, 665, 734, 740, 1016, 1323
MslI	CAYNNNNRTG	1 cut(s)	1221
MspR9I	CCNGG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	2 cut(s)	222, 1120
MwoI	GCNNNNNNNGC	1 cut(s)	1126
NdeII	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
NlaIII	CATG	7 cut(s)	248, 871, 980, 1226, 1235, 1361, 1419
NlaIV	GGNNCC	2 cut(s)	227, 712
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	1235
PagI	TCATGA	1 cut(s)	1415
PceI	AGGCCT	1 cut(s)	1129
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	5 cut(s)	57, 327, 437, 934, 973
Pfl23II	CGTACG	1 cut(s)	1121
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	121, 124, 652, 679
PleI	GAGTC	3 cut(s)	511, 607, 1221
PpsI	GAGTC	3 cut(s)	511, 607, 1221
Ppu21I	YACGTR	2 cut(s)	456, 1151
PshBI	ATTAAT	1 cut(s)	740
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspLI	CGTACG	1 cut(s)	1121
PspN4I	GGNNCC	2 cut(s)	227, 712
PsuI	RGATCY	2 cut(s)	349, 694
RsaI	GTAC	5 cut(s)	454, 632, 843, 1117, 1123
RsaNI	GTAC	5 cut(s)	453, 631, 842, 1116, 1122
RseI	CAYNNNNRTG	1 cut(s)	1221
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	8 cut(s)	111, 375, 573, 665, 734, 740, 1016, 1323
SatI	GCNGC	4 cut(s)	120, 123, 651, 678
Sau3AI	GATC	6 cut(s)	349, 694, 881, 1024, 1042, 1282
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	3 cut(s)	512, 607, 1222
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	181, 769, 1082
SmiMI	CAYNNNNRTG	1 cut(s)	1221
SmlI	CTYRAG	3 cut(s)	615, 626, 1181
SmoI	CTYRAG	3 cut(s)	615, 626, 1181
SnaBI	TACGTA	2 cut(s)	456, 1151
SpeI	ACTAGT	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	1129
SsiI	CCGC	2 cut(s)	119, 222
SspI	AATATT	2 cut(s)	167, 414
SspMI	CTAG	2 cut(s)	129, 195
SstI	GAGCTC	1 cut(s)	513
StuI	AGGCCT	1 cut(s)	1129
StyD4I	CCNGG	1 cut(s)	140
TaaI	ACNGT	7 cut(s)	319, 647, 670, 846, 1034, 1115, 1396
TaiI	ACGT	4 cut(s)	458, 861, 1153, 1297
TaqI	TCGA	7 cut(s)	180, 321, 408, 598, 641, 716, 1311
TaqII	GACCGA	1 cut(s)	69
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	5 cut(s)	57, 327, 437, 934, 973
Tru1I	TTAA	8 cut(s)	111, 375, 573, 665, 734, 740, 1016, 1323
Tru9I	TTAA	8 cut(s)	111, 375, 573, 665, 734, 740, 1016, 1323
TscAI	CASTG	2 cut(s)	67, 882
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	3 cut(s)	122, 650, 677
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	90, 410, 900, 1054
TspRI	CASTG	2 cut(s)	67, 882
Van91I	CCANNNNNTGG	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	740
XapI	RAATTY	3 cut(s)	1019, 1163, 1400
XceI	RCATGY	1 cut(s)	1235
XmiI	GTMKAC	2 cut(s)	51, 359
XspI	CTAG	2 cut(s)	129, 195
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.