Rroxscaffold_2G00082400

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008213
Physical Location & Seq
Forward (+)
5247399 .. 5249022
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082400.1

Sequence Viewer

Length: 915 bp
ATGGGTCTAGTATTCGGCTGTTTGCAAGTGAAGGAGTCAAAGGTTGCTGTGAGGGAACATTTTGGTAAGTTTGATGATGCGCTTGAACCAGGTATTCACTGCTTGCCTTGGTATTTTGGGTACAAGATAGCTGGTGAGGTATCACTGCGTGTGCAACAGCTCGATGTTAAATGTGAAACCAAGACAAAGTTAGTTTCCCTGAAATTGAGTAATGTAGATATTTTGATCAAAGGACTCCCGGAAGATAATGTATTTGTCAATGTGGTTGCATCTATTCAGTTTCGTGCATTACCGGAAAAAGTAGAGGATGCTTTCTATAAGCTAACTAACGCCAATGAGCAGATTCAAGCCTATGTTTTCGATGTTATCAGGGCAAGTGTACCCAAGCTGGAGTTGGATAATGTCTTTGAGCAGAAGAGTGATATAGCAAAAGTTGTTGAAAAGGAGCTTGCAAAGGCAATGTCTGCTTATGGTTTCAAAATAGTCCAGACCCTTATTGTTGATATTGTGCCTGATGATCGCGTCAAGAGAGCGATGAATGAGATCAATGCAGCTGCAAGACTGAGGGTTGCTGCAATGGAAAAGGCTGAAGCAGAAAAAATTTTACAGGTCAAGAGAGCTGAAGCAGAAGCAGAGTCCAAGTACTTAGCAGGGCTTGGAATAGCTCGCCAGCGCCAGGCCATTGTTGACGGGCCGAGAAATAGTGTTGTTCTATTCTCTGAAAATGTTCCTGGAGCATCAGCCAAGGATGTCATGGACATGGTTCTACTGACTCAATACTTTGACACCATGAAGGAGATCGGAGCATTATCAAAGTCATCATCCGTTTTCATCCCCCACGGGCCAGGTGCTGTGAGAGACGTTGCTTCGCAGATTCGAGAGGGTCTCCTTCAACCCGATTCTGCTCAAAATTGA

Protein Analysis

304

Amino Acids

33.57

Weight (kDa)

6.05

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 200 3.7e-25 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 522
AcsI RAATTY 1 cut(s) 600
AcuI CTGAAG 2 cut(s) 609, 642
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 3 cut(s) 122, 381, 644
AfiI CCNNNNNNNGG 1 cut(s) 676
AgsI TTSAA 5 cut(s) 86, 347, 440, 478, 893
AjnI CCWGG 4 cut(s) 88, 675, 730, 844
AluBI AGCT 8 cut(s) 131, 160, 322, 388, 448, 554, 620, 665
AluI AGCT 8 cut(s) 131, 160, 322, 388, 448, 554, 620, 665
Alw26I GTCTC 2 cut(s) 852, 890
AlwNI CAGNNNCTG 1 cut(s) 851
AoxI GGCC 3 cut(s) 678, 692, 842
ApeKI GCWGC 3 cut(s) 551, 554, 572
ApoI RAATTY 1 cut(s) 600
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 2 cut(s) 82, 675
AspS9I GGNCC 2 cut(s) 692, 842
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 146
BbvI GCAGC 3 cut(s) 541, 559, 563
BciT130I CCWGG 4 cut(s) 90, 677, 732, 846
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 852, 890
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 676
BisI GCNGC 3 cut(s) 552, 555, 573
BlsI GCNGC 3 cut(s) 553, 556, 574
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 5 cut(s) 90, 239, 677, 732, 846
BmgT120I GGNCC 2 cut(s) 692, 842
BmrFI CCNGG 5 cut(s) 90, 239, 677, 732, 846
BmsI GCATC 4 cut(s) 67, 278, 298, 746
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 2 cut(s) 410, 753
BpuMI CCSGG 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 3 cut(s) 107, 744, 838
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse3DI GCAATG 2 cut(s) 465, 582
BseBI CCWGG 4 cut(s) 90, 677, 732, 846
BseDI CCNNGG 3 cut(s) 107, 744, 838
BseGI GGATG 4 cut(s) 313, 754, 821, 831
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMI GCAATG 2 cut(s) 465, 582
BseMII CTCAG 1 cut(s) 554
BseXI GCAGC 3 cut(s) 541, 559, 563
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 3 cut(s) 680, 694, 844
BsiSI CCGG 2 cut(s) 239, 293
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 2 cut(s) 852, 890
BsmBI CGTCTC 1 cut(s) 852
BsnI GGCC 3 cut(s) 680, 694, 844
Bso31I GGTCTC 1 cut(s) 890
Bsp143I GATC 4 cut(s) 225, 517, 543, 798
BspANI GGCC 3 cut(s) 680, 694, 844
BspCNI CTCAG 1 cut(s) 555
BspFNI CGCG 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 890
BsrDI GCAATG 2 cut(s) 465, 582
BssECI CCNNGG 3 cut(s) 107, 744, 838
BssMI GATC 4 cut(s) 225, 517, 543, 798
BssT1I CCWWGG 2 cut(s) 107, 744
Bst2UI CCWGG 4 cut(s) 90, 677, 732, 846
Bst6I CTCTTC 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 4 cut(s) 104, 450, 667, 671
BstDEI CTNAG 2 cut(s) 563, 646
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 4 cut(s) 313, 754, 821, 831
BstFNI CGCG 1 cut(s) 522
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 2 cut(s) 82, 675
BstKTI GATC 4 cut(s) 228, 520, 546, 801
BstMAI GTCTC 2 cut(s) 852, 890
BstMBI GATC 4 cut(s) 225, 517, 543, 798
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 4 cut(s) 90, 677, 732, 846
BstSCI CCNGG 5 cut(s) 88, 237, 675, 730, 844
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 3 cut(s) 541, 559, 563
BsuRI GGCC 3 cut(s) 680, 694, 844
BtgI CCRYGG 1 cut(s) 838
BtgZI GCGATG 1 cut(s) 548
BtsCI GGATG 4 cut(s) 313, 754, 821, 831
BtsI GCAGTG 2 cut(s) 97, 143
BtsIMutI CAGTG 2 cut(s) 97, 143
Cac8I GCNNGC 4 cut(s) 104, 450, 667, 671
CaiI CAGNNNCTG 1 cut(s) 851
CfoI GCGC 2 cut(s) 82, 675
Cfr13I GGNCC 2 cut(s) 692, 842
CseI GACGC 1 cut(s) 511
CsiI ACCWGGT 1 cut(s) 88
Csp6I GTAC 3 cut(s) 121, 380, 643
CviAII CATG 3 cut(s) 754, 760, 790
CviQI GTAC 3 cut(s) 121, 380, 643
DdeI CTNAG 2 cut(s) 563, 646
DpnI GATC 4 cut(s) 227, 519, 545, 800
DpnII GATC 4 cut(s) 225, 517, 543, 798
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 107, 744
Eco31I GGTCTC 1 cut(s) 890
Eco57I CTGAAG 2 cut(s) 609, 642
EcoRII CCWGG 4 cut(s) 88, 675, 730, 844
EcoT14I CCWWGG 2 cut(s) 107, 744
ErhI CCWWGG 2 cut(s) 107, 744
Esp3I CGTCTC 1 cut(s) 852
FaeI CATG 3 cut(s) 757, 763, 793
FaiI YATR 7 cut(s) 318, 354, 425, 471, 755, 761, 791
FatI CATG 3 cut(s) 753, 759, 789
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 552, 555, 573
FokI GGATG 4 cut(s) 320, 761, 808, 818
Fsp4HI GCNGC 3 cut(s) 552, 555, 573
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 81, 674
GluI GCNGC 3 cut(s) 552, 555, 573
GsuI CTGGAG 2 cut(s) 410, 753
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 3 cut(s) 680, 694, 844
HapII CCGG 2 cut(s) 239, 293
HgaI GACGC 1 cut(s) 511
HhaI GCGC 2 cut(s) 82, 675
Hin1II CATG 3 cut(s) 757, 763, 793
Hin6I GCGC 2 cut(s) 80, 673
HinP1I GCGC 2 cut(s) 80, 673
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 7 cut(s) 35, 234, 343, 635, 772, 874, 899
HpaII CCGG 2 cut(s) 239, 293
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 380, 688
Hpy188I TCNGA 2 cut(s) 721, 803
Hpy188III TCNNGA 4 cut(s) 487, 526, 613, 878
Hpy8I GTNNAC 2 cut(s) 380, 688
HpyAV CCTTC 3 cut(s) 25, 787, 899
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 8 cut(s) 25, 154, 269, 287, 452, 551, 557, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 563, 646
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 3 cut(s) 757, 763, 793
HspAI GCGC 2 cut(s) 80, 673
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 4 cut(s) 225, 517, 543, 798
LmnI GCTCC 3 cut(s) 445, 734, 803
Lsp1109I GCAGC 3 cut(s) 541, 559, 563
LweI GCATC 4 cut(s) 67, 278, 298, 746
MabI ACCWGGT 1 cut(s) 88
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 861
MalI GATC 4 cut(s) 227, 519, 545, 800
MboI GATC 4 cut(s) 225, 517, 543, 798
MboII GAAGA 2 cut(s) 254, 427
MluCI AATT 3 cut(s) 203, 600, 910
MlyI GAGTC 4 cut(s) 44, 228, 644, 766
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 5 cut(s) 45, 130, 298, 558, 874
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 2 cut(s) 239, 293
MspR9I CCNGG 5 cut(s) 90, 239, 677, 732, 846
MvaI CCWGG 4 cut(s) 90, 677, 732, 846
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 464
NciI CCSGG 1 cut(s) 239
NdeII GATC 4 cut(s) 225, 517, 543, 798
NlaIII CATG 3 cut(s) 757, 763, 793
NmeAIII GCCGAG 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 3 cut(s) 343, 874, 899
PfoI TCCNGGA 2 cut(s) 237, 730
PkrI GCNGC 3 cut(s) 553, 556, 574
PleI GAGTC 4 cut(s) 43, 228, 643, 766
PpsI GAGTC 4 cut(s) 43, 228, 643, 766
Psp6I CCWGG 4 cut(s) 88, 675, 730, 844
PspGI CCWGG 4 cut(s) 88, 675, 730, 844
PspPI GGNCC 2 cut(s) 692, 842
PstNI CAGNNNCTG 1 cut(s) 851
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 3 cut(s) 122, 381, 644
RsaNI GTAC 3 cut(s) 121, 380, 643
RseI CAYNNNNRTG 1 cut(s) 758
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 552, 555, 573
Sau3AI GATC 4 cut(s) 225, 517, 543, 798
Sau96I GGNCC 2 cut(s) 692, 842
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 4 cut(s) 44, 228, 644, 766
ScrFI CCNGG 5 cut(s) 90, 239, 677, 732, 846
SexAI ACCWGGT 1 cut(s) 88
SfaNI GCATC 4 cut(s) 67, 278, 298, 746
SmiMI CAYNNNNRTG 1 cut(s) 758
Sse9I AATT 3 cut(s) 203, 600, 910
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 5 cut(s) 88, 237, 675, 730, 844
StyI CCWWGG 2 cut(s) 107, 744
TaiI ACGT 1 cut(s) 864
TaqI TCGA 3 cut(s) 162, 360, 877
TasI AATT 3 cut(s) 203, 600, 910
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 3 cut(s) 343, 874, 899
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 104, 150
TseI GCWGC 3 cut(s) 551, 554, 572
TspDTI ATGAA 3 cut(s) 551, 806, 820
TspGWI ACGGA 1 cut(s) 814
TspRI CASTG 2 cut(s) 104, 150
XapI RAATTY 1 cut(s) 600
XcmI CCANNNNNNNNNTGG 2 cut(s) 391, 751
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.