Rh2CG590800

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008213
Physical Location & Seq
Reverse (-)
76719568 .. 76721568
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG590800.1

Sequence Viewer

Length: 879 bp
ATGAACTCAGCAATAATCCAGAAAGAGATCATAACAAAAGAGTTTACAAGATACAGTTGCGTTGTAAGTGTGGGTCTAGTATTCGGCTGTTTGCAAGTGAAGGAGTCAAAGGTTGCTGTGAGGGAACATTTTGGTAAGTTTGATGATGCGCTTGAACCAGGTATTCACTGCTTGCCTTGGTGTTTTGGGTACAAGATAGGTGGTGAGGTATCACTGCGTGTCCGACAGCTCGATGTTAAATGTGAAACCAAGACTAAGGATAATGTGTTTGTCAATGTGGTTGCATCTATTCAGTTTCGTGCATTACCGGAAAAAGTAGAGCATGCTTTCTATAAGCTAACTAACGCCAATGAGCAGATTCAAGCCTATGTTTTCGATGTTATCAGGGCAACAAAAGTCGTTGAAAAGGAGCTTGCAAAGGCAATGTCTGCTTATGGTTTCGAAATAGTCCAGACCCTTATTGTTGATATTGTGCCTGATGATCGTGTCAAGAGAGCGATGAATGAGATCAATGCAGCTGCAAGACTGAGGGTTGCTGCAATGGAAAAGGTTGAAGCAGAAAAAATTTTACAGGTCAAGAGAGCTGAAGCAGAAGCAGAGTCCAAGTACTTAGCAGGGCTTGGAACAGCTCGCCAGCGCCAGGCCATTGTTGACGGGCTGAGAAATAGTGTTGTTCTATTCTCTGAAAATGTTCCTGGAGCATCAGCCAAGGATGTCATGGACATGGTTCTACTGACTCAATACTTTGACACCATGAAGGAGATCGGAGCATTATCAAAGCCATCATCCGTTTTCATCCCCCACGGGCCAGGTGCTGTGAGAGACGTTGCTTCGCAGATTCGAGAGGGTCTCCTTCAACCCGATTCTGCTCAAAATTGA

Protein Analysis

292

Amino Acids

32.35

Weight (kDa)

7.61

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 32 - 130 7.7e-11 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 564
AcuI CTGAAG 1 cut(s) 606
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 2 cut(s) 191, 608
AfiI CCNNNNNNNGG 1 cut(s) 640
AgsI TTSAA 5 cut(s) 155, 362, 404, 554, 857
AjnI CCWGG 4 cut(s) 157, 639, 694, 808
AluBI AGCT 6 cut(s) 229, 337, 412, 518, 584, 629
AluI AGCT 6 cut(s) 229, 337, 412, 518, 584, 629
Alw26I GTCTC 2 cut(s) 816, 854
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 2 cut(s) 642, 806
ApeKI GCWGC 3 cut(s) 515, 518, 536
ApoI RAATTY 1 cut(s) 564
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 2 cut(s) 151, 639
AspS9I GGNCC 1 cut(s) 806
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 441
BbvI GCAGC 3 cut(s) 505, 523, 527
BccI CCATC 1 cut(s) 790
BciT130I CCWGG 4 cut(s) 159, 641, 696, 810
BcoDI GTCTC 2 cut(s) 816, 854
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 3 cut(s) 516, 519, 537
BlsI GCNGC 3 cut(s) 517, 520, 538
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 4 cut(s) 159, 641, 696, 810
BmgT120I GGNCC 1 cut(s) 806
BmrFI CCNGG 4 cut(s) 159, 641, 696, 810
BmsI GCATC 3 cut(s) 136, 293, 710
BplI GAGNNNNNCTC 2 cut(s) 834, 866
BpmI CTGGAG 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 176, 708, 802
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse3DI GCAATG 2 cut(s) 429, 546
BseBI CCWGG 4 cut(s) 159, 641, 696, 810
BseDI CCNNGG 3 cut(s) 176, 708, 802
BseGI GGATG 3 cut(s) 718, 785, 795
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMI GCAATG 2 cut(s) 429, 546
BseMII CTCAG 3 cut(s) 21, 518, 650
BseXI GCAGC 3 cut(s) 505, 523, 527
BshFI GGCC 2 cut(s) 644, 808
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 2 cut(s) 816, 854
BsmBI CGTCTC 1 cut(s) 816
BsnI GGCC 2 cut(s) 644, 808
Bso31I GGTCTC 1 cut(s) 854
Bsp119I TTCGAA 1 cut(s) 441
Bsp143I GATC 4 cut(s) 27, 481, 507, 762
BspANI GGCC 2 cut(s) 644, 808
BspCNI CTCAG 3 cut(s) 20, 519, 651
BspT104I TTCGAA 1 cut(s) 441
BspTNI GGTCTC 1 cut(s) 854
BsrDI GCAATG 2 cut(s) 429, 546
BssECI CCNNGG 3 cut(s) 176, 708, 802
BssMI GATC 4 cut(s) 27, 481, 507, 762
BssT1I CCWWGG 2 cut(s) 176, 708
Bst2UI CCWGG 4 cut(s) 159, 641, 696, 810
Bst4CI ACNGT 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 5 cut(s) 173, 324, 414, 631, 635
BstDEI CTNAG 5 cut(s) 7, 255, 527, 610, 659
BstDSI CCRYGG 1 cut(s) 802
BstF5I GGATG 3 cut(s) 718, 785, 795
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 2 cut(s) 151, 639
BstKTI GATC 4 cut(s) 30, 484, 510, 765
BstMAI GTCTC 2 cut(s) 816, 854
BstMBI GATC 4 cut(s) 27, 481, 507, 762
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 4 cut(s) 159, 641, 696, 810
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 4 cut(s) 157, 639, 694, 808
BstV1I GCAGC 3 cut(s) 505, 523, 527
BsuRI GGCC 2 cut(s) 644, 808
BtgI CCRYGG 1 cut(s) 802
BtgZI GCGATG 1 cut(s) 512
BtsCI GGATG 3 cut(s) 718, 785, 795
BtsI GCAGTG 2 cut(s) 166, 212
BtsIMutI CAGTG 2 cut(s) 166, 212
Cac8I GCNNGC 5 cut(s) 173, 324, 414, 631, 635
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 2 cut(s) 151, 639
Cfr13I GGNCC 1 cut(s) 806
CsiI ACCWGGT 1 cut(s) 157
Csp6I GTAC 2 cut(s) 190, 607
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 4 cut(s) 323, 718, 724, 754
CviQI GTAC 2 cut(s) 190, 607
DdeI CTNAG 5 cut(s) 7, 255, 527, 610, 659
DpnI GATC 4 cut(s) 29, 483, 509, 764
DpnII GATC 4 cut(s) 27, 481, 507, 762
DraIII CACNNNGTG 1 cut(s) 218
Eco130I CCWWGG 2 cut(s) 176, 708
Eco31I GGTCTC 1 cut(s) 854
Eco57I CTGAAG 1 cut(s) 606
EcoRII CCWGG 4 cut(s) 157, 639, 694, 808
EcoT14I CCWWGG 2 cut(s) 176, 708
ErhI CCWWGG 2 cut(s) 176, 708
Esp3I CGTCTC 1 cut(s) 816
FaeI CATG 4 cut(s) 326, 721, 727, 757
FaiI YATR 8 cut(s) 32, 324, 333, 369, 435, 719, 725, 755
FatI CATG 4 cut(s) 322, 717, 723, 753
Fnu4HI GCNGC 3 cut(s) 516, 519, 537
FokI GGATG 3 cut(s) 725, 772, 782
Fsp4HI GCNGC 3 cut(s) 516, 519, 537
FspBI CTAG 1 cut(s) 77
GlaI GCGC 2 cut(s) 150, 638
GluI GCNGC 3 cut(s) 516, 519, 537
GsuI CTGGAG 1 cut(s) 717
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 2 cut(s) 644, 808
HapII CCGG 1 cut(s) 308
HhaI GCGC 2 cut(s) 151, 639
Hin1II CATG 4 cut(s) 326, 721, 727, 757
Hin6I GCGC 2 cut(s) 149, 637
HinP1I GCGC 2 cut(s) 149, 637
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 6 cut(s) 104, 358, 599, 736, 838, 863
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 45, 652
Hpy188I TCNGA 3 cut(s) 224, 685, 767
Hpy188III TCNNGA 5 cut(s) 19, 451, 490, 577, 842
Hpy8I GTNNAC 2 cut(s) 45, 652
HpyAV CCTTC 3 cut(s) 94, 751, 863
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 7 cut(s) 94, 284, 302, 416, 515, 521, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 5 cut(s) 7, 255, 527, 610, 659
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 4 cut(s) 326, 721, 727, 757
HspAI GCGC 2 cut(s) 149, 637
Kzo9I GATC 4 cut(s) 27, 481, 507, 762
LmnI GCTCC 3 cut(s) 409, 698, 767
Lsp1109I GCAGC 3 cut(s) 505, 523, 527
LweI GCATC 3 cut(s) 136, 293, 710
MabI ACCWGGT 1 cut(s) 157
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 825
MalI GATC 4 cut(s) 29, 483, 509, 764
MboI GATC 4 cut(s) 27, 481, 507, 762
MluCI AATT 2 cut(s) 564, 874
MlyI GAGTC 3 cut(s) 113, 608, 730
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 114, 199, 522, 838
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 4 cut(s) 159, 641, 696, 810
MvaI CCWGG 4 cut(s) 159, 641, 696, 810
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 4 cut(s) 27, 481, 507, 762
NlaIII CATG 4 cut(s) 326, 721, 727, 757
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 441
PaeI GCATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 3 cut(s) 358, 838, 863
PfoI TCCNGGA 1 cut(s) 694
PkrI GCNGC 3 cut(s) 517, 520, 538
PleI GAGTC 3 cut(s) 112, 607, 730
PpsI GAGTC 3 cut(s) 112, 607, 730
Psp6I CCWGG 4 cut(s) 157, 639, 694, 808
PspGI CCWGG 4 cut(s) 157, 639, 694, 808
PspPI GGNCC 1 cut(s) 806
PstNI CAGNNNCTG 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 2 cut(s) 191, 608
RsaNI GTAC 2 cut(s) 190, 607
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 3 cut(s) 516, 519, 537
Sau3AI GATC 4 cut(s) 27, 481, 507, 762
Sau96I GGNCC 1 cut(s) 806
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 3 cut(s) 113, 608, 730
ScrFI CCNGG 4 cut(s) 159, 641, 696, 810
SexAI ACCWGGT 1 cut(s) 157
SfaNI GCATC 3 cut(s) 136, 293, 710
SfuI TTCGAA 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 722
SphI GCATGC 1 cut(s) 326
Sse9I AATT 2 cut(s) 564, 874
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 4 cut(s) 157, 639, 694, 808
StyI CCWWGG 2 cut(s) 176, 708
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 828
TaqI TCGA 4 cut(s) 231, 375, 441, 841
TasI AATT 2 cut(s) 564, 874
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 3 cut(s) 358, 838, 863
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 173, 219
TseI GCWGC 3 cut(s) 515, 518, 536
TspDTI ATGAA 4 cut(s) 17, 515, 770, 784
TspGWI ACGGA 1 cut(s) 778
TspRI CASTG 2 cut(s) 173, 219
XapI RAATTY 1 cut(s) 564
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.