Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005369

Physical Location & Seq

Genomic Coordinates Reverse (-)

383 .. 1444

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTACAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0016168 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Photo_RC

Protein Analysis

353

Amino Acids

38.94

Weight (kDa)

5.12

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Photo_RC	PF00124	28 - 327	8.4e-94	Photosynthetic reaction centre protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00020
rosa_chinensis	RchiOBHm_Chr1g0354591 RchiOBHm_Chr4g0432801 RchiOBHm_Chr7g0221101 RchiOBHm_CPg0502541
rosa_laevigata	RLG00000000009 RLG00000000033 RLG00000000034 RLG00000000052 RLG00000000092 RLG00000000170 RLG00000000237 RLG00000000252 RLG00000000308 RLG00000002779 RLG00000029143 RLG00000029290
rosa_multiflora	Rmu_sc0003316.1_g000010 Rmu_sc0017755.1_g000007 Rmu_sc0017755.1_g000008
rosa_roxburghii	Rroxscaffold_2G00119130 Rroxscaffold_7G00179730
rosa_rugosa	RorugMtG0001300
rosa_samantha	Rh1AG125200 Rh1AG254400 Rh1CG119100 Rh4AG317100 Rh4DG320500
rosa_wichuraiana	Rw6G019460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	129, 327, 621, 827
AclWI	GGATC	2 cut(s)	106, 214
AcoI	YGGCCR	2 cut(s)	766, 833
AfaI	GTAC	2 cut(s)	535, 874
AfiI	CCNNNNNNNGG	4 cut(s)	203, 289, 842, 982
AflIII	ACRYGT	2 cut(s)	594, 934
AgsI	TTSAA	5 cut(s)	541, 796, 886, 901, 907
AjiI	CACGTC	1 cut(s)	935
AjnI	CCWGG	1 cut(s)	558
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	8 cut(s)	263, 296, 371, 446, 458, 608, 749, 1031
AluI	AGCT	8 cut(s)	263, 296, 371, 446, 458, 608, 749, 1031
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	106, 214
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	766, 833
ApeKI	GCWGC	7 cut(s)	161, 260, 296, 455, 458, 749, 1031
AseI	ATTAAT	1 cut(s)	942
Asp700I	GAANNNNTTC	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	7 cut(s)	148, 272, 283, 445, 467, 736, 1018
BccI	CCATC	4 cut(s)	87, 176, 503, 1054
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	6 cut(s)	66, 521, 663, 789, 1022, 1028
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 622, 750, 828, 1032
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	9 cut(s)	163, 262, 298, 457, 460, 623, 751, 829, 1033
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	935
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	4 cut(s)	241, 625, 649, 1044
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	564
BsaJI	CCNNGG	3 cut(s)	422, 651, 976
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 289, 842, 982
Bse118I	RCCGGY	1 cut(s)	835
Bse1I	ACTGG	2 cut(s)	62, 170
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	3 cut(s)	422, 651, 976
BseGI	GGATG	2 cut(s)	98, 299
BseLI	CCNNNNNNNGG	4 cut(s)	203, 289, 842, 982
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	62, 170
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	7 cut(s)	148, 272, 283, 445, 467, 736, 1018
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	768, 835
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	237, 836
BslI	CCNNNNNNNGG	4 cut(s)	203, 289, 842, 982
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	768, 835
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	111, 206, 477, 669
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	4 cut(s)	129, 327, 621, 827
BspANI	GGCC	2 cut(s)	768, 835
BspCNI	CTCAG	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	4 cut(s)	241, 625, 649, 1044
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	2 cut(s)	106, 214
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	835
BsrI	ACTGG	2 cut(s)	62, 170
BssAI	RCCGGY	1 cut(s)	835
BssECI	CCNNGG	3 cut(s)	422, 651, 976
BssMI	GATC	4 cut(s)	111, 206, 477, 669
BssT1I	CCWWGG	3 cut(s)	422, 651, 976
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	3 cut(s)	80, 758, 968
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	398, 564, 823
BstF5I	GGATG	2 cut(s)	98, 299
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	4 cut(s)	114, 209, 480, 672
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	111, 206, 477, 669
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 443, 452, 464, 1040
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	148, 272, 283, 445, 467, 736, 1018
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	768, 835
BtrI	CACGTC	1 cut(s)	935
BtsCI	GGATG	2 cut(s)	98, 299
BtsIMutI	CAGTG	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr10I	RCCGGY	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	2 cut(s)	30, 407
Csp6I	GTAC	2 cut(s)	534, 873
CviAII	CATG	3 cut(s)	595, 644, 995
CviQI	GTAC	2 cut(s)	534, 873
DdeI	CTNAG	3 cut(s)	398, 564, 823
DpnI	GATC	4 cut(s)	113, 208, 479, 671
DpnII	GATC	4 cut(s)	111, 206, 477, 669
EaeI	YGGCCR	2 cut(s)	766, 833
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	3 cut(s)	422, 651, 976
Eco47I	GGWCC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	3 cut(s)	422, 651, 976
EcoT22I	ATGCAT	2 cut(s)	645, 996
ErhI	CCWWGG	3 cut(s)	422, 651, 976
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	3 cut(s)	598, 647, 998
FatI	CATG	3 cut(s)	594, 643, 994
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 622, 750, 828, 1032
FokI	GGATG	2 cut(s)	105, 286
Fsp4HI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 622, 750, 828, 1032
FspBI	CTAG	6 cut(s)	66, 521, 663, 789, 1022, 1028
GluI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 622, 750, 828, 1032
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	768, 835
HapII	CCGG	2 cut(s)	237, 836
HgaI	GACGC	2 cut(s)	30, 407
Hin1II	CATG	3 cut(s)	598, 647, 998
HinfI	GANTC	3 cut(s)	525, 692, 714
HpaII	CCGG	2 cut(s)	237, 836
Hpy166II	GTNNAC	2 cut(s)	194, 855
Hpy188I	TCNGA	1 cut(s)	508
Hpy188III	TCNNGA	5 cut(s)	191, 204, 386, 475, 1022
Hpy8I	GTNNAC	2 cut(s)	194, 855
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	3 cut(s)	80, 758, 968
HpyCH4IV	ACGT	2 cut(s)	934, 1000
HpyCH4V	TGCA	9 cut(s)	8, 260, 274, 299, 437, 455, 583, 643, 994
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 443, 452, 464, 1040
HpyF3I	CTNAG	3 cut(s)	398, 564, 823
HpySE526I	ACGT	2 cut(s)	934, 1000
Hsp92II	CATG	3 cut(s)	598, 647, 998
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	4 cut(s)	111, 206, 477, 669
LmnI	GCTCC	4 cut(s)	169, 451, 629, 1048
Lsp1109I	GCAGC	7 cut(s)	148, 272, 283, 445, 467, 736, 1018
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	6 cut(s)	66, 521, 663, 789, 1022, 1028
MaeII	ACGT	2 cut(s)	934, 1000
MaeIII	GTNAC	3 cut(s)	53, 655, 707
MalI	GATC	4 cut(s)	113, 208, 479, 671
MboI	GATC	4 cut(s)	111, 206, 477, 669
MboII	GAAGA	4 cut(s)	203, 737, 740, 811
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	5 cut(s)	9, 342, 486, 799, 901
MnlI	CCTC	4 cut(s)	177, 528, 1029, 1033
Mph1103I	ATGCAT	2 cut(s)	645, 996
MroXI	GAANNNNTTC	1 cut(s)	502
MseI	TTAA	2 cut(s)	942, 963
MslI	CAYNNNNRTG	1 cut(s)	578
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	237, 836
MspR9I	CCNGG	1 cut(s)	560
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	5 cut(s)	158, 443, 452, 464, 1040
NdeII	GATC	4 cut(s)	111, 206, 477, 669
NlaIII	CATG	3 cut(s)	598, 647, 998
NlaIV	GGNNCC	4 cut(s)	241, 625, 649, 1044
NsiI	ATGCAT	2 cut(s)	645, 996
NspI	RCATGY	1 cut(s)	598
PciI	ACATGT	1 cut(s)	594
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	3 cut(s)	525, 692, 714
PkrI	GCNGC	9 cut(s)	163, 262, 298, 457, 460, 623, 751, 829, 1033
PscI	ACATGT	1 cut(s)	594
PshBI	ATTAAT	1 cut(s)	942
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	4 cut(s)	241, 625, 649, 1044
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	535, 874
RsaNI	GTAC	2 cut(s)	534, 873
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	2 cut(s)	942, 963
SatI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 622, 750, 828, 1032
Sau3AI	GATC	4 cut(s)	111, 206, 477, 669
Sau96I	GGNCC	1 cut(s)	329
ScaI	AGTACT	1 cut(s)	874
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	578
Sse9I	AATT	5 cut(s)	9, 342, 486, 799, 901
SsiI	CCGC	4 cut(s)	129, 327, 621, 827
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	6 cut(s)	66, 521, 663, 789, 1022, 1028
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	3 cut(s)	422, 651, 976
TaaI	ACNGT	3 cut(s)	80, 758, 968
TaiI	ACGT	2 cut(s)	937, 1003
TasI	AATT	5 cut(s)	9, 342, 486, 799, 901
TatI	WGTACW	1 cut(s)	872
TauI	GCSGC	2 cut(s)	624, 830
TfiI	GAWTC	3 cut(s)	525, 692, 714
Tru1I	TTAA	2 cut(s)	942, 963
Tru9I	TTAA	2 cut(s)	942, 963
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	7 cut(s)	161, 260, 296, 455, 458, 749, 1031
TspDTI	ATGAA	6 cut(s)	145, 324, 351, 705, 717, 1011
TspGWI	ACGGA	3 cut(s)	234, 292, 395
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	942
XbaI	TCTAGA	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	6 cut(s)	66, 521, 663, 789, 1022, 1028
ZrmI	AGTACT	1 cut(s)	874
Zsp2I	ATGCAT	2 cut(s)	645, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.