Rh1CG119100

Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005369
Physical Location & Seq
Reverse (-)
25740301 .. 25782132
41832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG119100.1

Sequence Viewer

Length: 765 bp
ATGACTGCAATTTTCGAGAGACGTGAAAGCGAAAGCCTATGGGGTCGCTTTTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCCTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGCTCTATGGGGACCTTCGACGGCAGAAAATGATGAAAATTTGGAGGCAAGTGCCTTCGAAGATGAAGGTGGACCAACTAAGGACGGAATAAAGAAGAAGTCTCTTGGACCTAAAGCTCCAAAGACATTTGATGAGTTAAGTGACAACATTAATATTATGGCCTTATGTAATGCAAGTCCAGGAGTCCCATACTATTTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

254

Amino Acids

27.7

Weight (kDa)

4.57

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 28 - 164 2.1e-41 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 2 cut(s) 129, 296
AclWI GGATC 2 cut(s) 106, 214
AcsI RAATTY 1 cut(s) 598
AfiI CCNNNNNNNGG 2 cut(s) 203, 289
AjiI CACGTC 1 cut(s) 23
AjnI CCWGG 1 cut(s) 739
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 7 cut(s) 263, 340, 371, 446, 458, 531, 677
AluI AGCT 7 cut(s) 263, 340, 371, 446, 458, 531, 677
Alw26I GTCTC 2 cut(s) 13, 666
AlwI GGATC 2 cut(s) 106, 214
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 1 cut(s) 720
ApeKI GCWGC 4 cut(s) 161, 260, 455, 458
ApoI RAATTY 1 cut(s) 598
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 1 cut(s) 532
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 5 cut(s) 329, 491, 572, 632, 668
AsuII TTCGAA 1 cut(s) 618
AvaII GGWCC 5 cut(s) 329, 491, 572, 632, 668
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 4 cut(s) 148, 272, 445, 467
BccI CCATC 2 cut(s) 87, 176
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 1 cut(s) 741
BcoDI GTCTC 2 cut(s) 13, 666
BfaI CTAG 1 cut(s) 551
BfmI CTRYAG 2 cut(s) 258, 264
BisI GCNGC 5 cut(s) 162, 261, 297, 456, 459
BlsI GCNGC 5 cut(s) 163, 262, 298, 457, 460
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 5 cut(s) 329, 491, 572, 632, 668
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 5 cut(s) 329, 491, 572, 632, 668
BmiI GGNNCC 2 cut(s) 241, 573
BmrFI CCNGG 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 618
BsaJI CCNNGG 1 cut(s) 422
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 289
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 203, 289
BseMI GCAATG 1 cut(s) 156
BseXI GCAGC 4 cut(s) 148, 272, 445, 467
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 722
BshNI GGYRCC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 2 cut(s) 585, 731
BslI CCNNNNNNNGG 2 cut(s) 203, 289
BsmAI GTCTC 2 cut(s) 13, 666
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 585, 731
BsnI GGCC 1 cut(s) 722
Bsp119I TTCGAA 1 cut(s) 618
Bsp143I GATC 4 cut(s) 111, 206, 477, 507
BspACI CCGC 2 cut(s) 129, 296
BspANI GGCC 1 cut(s) 722
BspLI GGNNCC 2 cut(s) 241, 573
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 2 cut(s) 106, 214
BspT104I TTCGAA 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 4 cut(s) 111, 206, 477, 507
BssT1I CCWWGG 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 3 cut(s) 80, 326, 542
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 2 cut(s) 398, 639
BstF5I GGATG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 4 cut(s) 114, 209, 480, 510
BstMAI GTCTC 2 cut(s) 13, 666
BstMBI GATC 4 cut(s) 111, 206, 477, 507
BstMWI GCNNNNNNNGC 4 cut(s) 158, 443, 452, 464
BstNI CCWGG 1 cut(s) 741
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 2 cut(s) 258, 264
BstV1I GCAGC 4 cut(s) 148, 272, 445, 467
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 722
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 5 cut(s) 329, 491, 572, 632, 668
CviAII CATG 1 cut(s) 379
DdeI CTNAG 2 cut(s) 398, 639
DpnI GATC 4 cut(s) 113, 208, 479, 509
DpnII GATC 4 cut(s) 111, 206, 477, 507
Eco130I CCWWGG 1 cut(s) 422
Eco47I GGWCC 5 cut(s) 329, 491, 572, 632, 668
EcoO109I RGGNCCY 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 422
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 1 cut(s) 382
FaqI GGGAC 2 cut(s) 585, 731
FatI CATG 1 cut(s) 378
Fnu4HI GCNGC 5 cut(s) 162, 261, 297, 456, 459
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 5 cut(s) 162, 261, 297, 456, 459
FspBI CTAG 1 cut(s) 551
GlaI GCGC 1 cut(s) 419
GluI GCNGC 5 cut(s) 162, 261, 297, 456, 459
HaeIII GGCC 1 cut(s) 722
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 420
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 529
HinfI GANTC 2 cut(s) 555, 744
HpaII CCGG 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 194, 632
Hpy188I TCNGA 1 cut(s) 538
Hpy188III TCNNGA 6 cut(s) 16, 191, 204, 386, 475, 505
Hpy8I GTNNAC 2 cut(s) 194, 632
Hpy99I CGWCG 1 cut(s) 583
HpyAV CCTTC 3 cut(s) 585, 620, 625
HpyCH4III ACNGT 3 cut(s) 80, 326, 542
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 7 cut(s) 8, 164, 260, 274, 437, 455, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 443, 452, 464
HpyF3I CTNAG 2 cut(s) 398, 639
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 1 cut(s) 418
Kzo9I GATC 4 cut(s) 111, 206, 477, 507
LmnI GCTCC 2 cut(s) 451, 682
Lsp1109I GCAGC 4 cut(s) 148, 272, 445, 467
MaeI CTAG 1 cut(s) 551
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 701
MalI GATC 4 cut(s) 113, 208, 479, 509
MboI GATC 4 cut(s) 111, 206, 477, 507
MboII GAAGA 2 cut(s) 632, 667
MfeI CAATTG 2 cut(s) 486, 516
MflI RGATCY 1 cut(s) 206
MluCI AATT 6 cut(s) 9, 55, 342, 486, 516, 598
MlyI GAGTC 1 cut(s) 753
MnlI CCTC 3 cut(s) 177, 558, 598
MroXI GAANNNNTTC 1 cut(s) 532
MseI TTAA 2 cut(s) 698, 711
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 741
MunI CAATTG 2 cut(s) 486, 516
MvaI CCWGG 1 cut(s) 741
MwoI GCNNNNNNNGC 4 cut(s) 158, 443, 452, 464
NdeII GATC 4 cut(s) 111, 206, 477, 507
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 2 cut(s) 241, 573
NmuCI GTSAC 1 cut(s) 701
NspV TTCGAA 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 532
PfeI GAWTC 1 cut(s) 555
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 5 cut(s) 163, 262, 298, 457, 460
PleI GAGTC 1 cut(s) 752
PpsI GAGTC 1 cut(s) 752
PpuMI RGGWCCY 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 2 cut(s) 241, 573
PspPI GGNCC 5 cut(s) 329, 491, 572, 632, 668
PspPPI RGGWCCY 1 cut(s) 572
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 458
SaqAI TTAA 2 cut(s) 698, 711
SatI GCNGC 5 cut(s) 162, 261, 297, 456, 459
Sau3AI GATC 4 cut(s) 111, 206, 477, 507
Sau96I GGNCC 5 cut(s) 329, 491, 572, 632, 668
SchI GAGTC 1 cut(s) 753
ScrFI CCNGG 1 cut(s) 741
SfcI CTRYAG 2 cut(s) 258, 264
SfuI TTCGAA 1 cut(s) 618
SinI GGWCC 5 cut(s) 329, 491, 572, 632, 668
Sse9I AATT 6 cut(s) 9, 55, 342, 486, 516, 598
SsiI CCGC 2 cut(s) 129, 296
SspI AATATT 2 cut(s) 229, 715
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 3 cut(s) 80, 326, 542
TaiI ACGT 1 cut(s) 25
TaqI TCGA 3 cut(s) 15, 578, 618
TasI AATT 6 cut(s) 9, 55, 342, 486, 516, 598
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 555
Tru1I TTAA 2 cut(s) 698, 711
Tru9I TTAA 2 cut(s) 698, 711
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 4 cut(s) 161, 260, 455, 458
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 4 cut(s) 145, 324, 609, 639
TspGWI ACGGA 4 cut(s) 234, 292, 395, 660
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 5 cut(s) 329, 491, 572, 632, 668
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 532
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.