RLG00000029290

Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005369
Physical Location & Seq
Reverse (-)
36134306 .. 36135978
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029290

Sequence Viewer

Length: 1173 bp
ATGACTGCAATTTTAGAGAGACGTGAAAGCGAAAGCCTATGGGGTCGCTTTTGTAATTGGATAACCAGCACTGAAAACTGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTTCGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGATTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGAGTAATTAATACTTGGGCTGATATTATTAACCGCGCTAACCTTGGCGAGGCCATAGCAAGCGACGATGCAAGTTTGGATGACAGTGTTCTCTTGCCTGGTGAAGGGCTTCACCTGAAACCCAAATTGGGCCAAGAACCCGGTCCAGGACTTGACGAAGAAGAGCCCAAGCAGACCGGCGACCACATTCAAGGATGGGATGATCCCCACCGTCAGATTCAACTTGTGACCAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

391

Amino Acids

42.93

Weight (kDa)

4.79

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 28 - 321 2.3e-93 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 752
AccII CGCG 1 cut(s) 969
AciI CCGC 6 cut(s) 129, 296, 621, 750, 858, 967
AclWI GGATC 3 cut(s) 106, 214, 1130
AcoI YGGCCR 1 cut(s) 766
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 7 cut(s) 203, 289, 842, 982, 1037, 1061, 1079
AgsI TTSAA 6 cut(s) 541, 796, 886, 907, 1124, 1154
AjiI CACGTC 1 cut(s) 23
AjnI CCWGG 3 cut(s) 1030, 1078, 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 8 cut(s) 263, 340, 371, 446, 458, 501, 563, 827
AluI AGCT 8 cut(s) 263, 340, 371, 446, 458, 501, 563, 827
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 3 cut(s) 106, 214, 1130
AlwNI CAGNNNCTG 2 cut(s) 449, 461
AoxI GGCC 4 cut(s) 766, 833, 984, 1063
ApeKI GCWGC 7 cut(s) 161, 260, 455, 458, 461, 464, 827
AseI ATTAAT 1 cut(s) 942
Asp700I GAANNNNTTC 2 cut(s) 502, 1041
AspLEI GCGC 2 cut(s) 420, 971
AspS9I GGNCC 3 cut(s) 329, 1063, 1076
AsuC2I CCSGG 1 cut(s) 1074
AsuHPI GGTGA 3 cut(s) 847, 1037, 1046
AvaII GGWCC 2 cut(s) 329, 1076
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 1101
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 7 cut(s) 148, 272, 445, 448, 451, 467, 814
BccI CCATC 3 cut(s) 87, 176, 1122
BciT130I CCWGG 3 cut(s) 1032, 1080, 1165
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 1 cut(s) 1074
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 4 cut(s) 521, 599, 663, 789
BfmI CTRYAG 4 cut(s) 258, 264, 837, 915
BlpI GCTNAGC 1 cut(s) 564
Bme1390I CCNGG 4 cut(s) 1032, 1074, 1080, 1165
Bme18I GGWCC 2 cut(s) 329, 1076
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 329, 1063, 1076
BmiI GGNNCC 2 cut(s) 241, 625
BmrFI CCNGG 4 cut(s) 1032, 1074, 1080, 1165
BmsI GCATC 1 cut(s) 991
Bpu1102I GCTNAGC 1 cut(s) 564
BpuMI CCSGG 1 cut(s) 1074
BsaJI CCNNGG 2 cut(s) 422, 976
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 7 cut(s) 203, 289, 842, 982, 1037, 1061, 1079
Bse118I RCCGGY 1 cut(s) 1109
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 3 cut(s) 1032, 1080, 1165
BseDI CCNNGG 2 cut(s) 422, 976
BseGI GGATG 5 cut(s) 98, 573, 1018, 1133, 1138
BseLI CCNNNNNNNGG 7 cut(s) 203, 289, 842, 982, 1037, 1061, 1079
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 555
BseXI GCAGC 7 cut(s) 148, 272, 445, 448, 451, 467, 814
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 969
BshFI GGCC 4 cut(s) 768, 835, 986, 1065
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 3 cut(s) 170, 1074, 1110
BslI CCNNNNNNNGG 7 cut(s) 203, 289, 842, 982, 1037, 1061, 1079
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 4 cut(s) 768, 835, 986, 1065
Bsp1286I GDGCHC 2 cut(s) 570, 1101
Bsp143I GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 6 cut(s) 129, 296, 621, 750, 858, 967
BspANI GGCC 4 cut(s) 768, 835, 986, 1065
BspCNI CTCAG 1 cut(s) 556
BspFNI CGCG 1 cut(s) 969
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 241, 625
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 3 cut(s) 106, 214, 1130
BspQI GCTCTTC 1 cut(s) 1089
BspT107I GGYRCC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 1109
BssAI RCCGGY 1 cut(s) 1109
BssECI CCNNGG 2 cut(s) 422, 976
BssMI GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
BssT1I CCWWGG 2 cut(s) 422, 976
Bst2UI CCWGG 3 cut(s) 1032, 1080, 1165
Bst4CI ACNGT 5 cut(s) 80, 326, 512, 1019, 1145
Bst6I CTCTTC 1 cut(s) 1089
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 373, 994
BstDEI CTNAG 3 cut(s) 398, 564, 823
BstEII GGTNACC 1 cut(s) 655
BstENI CCTNNNNNAGG 3 cut(s) 840, 980, 1035
BstF5I GGATG 5 cut(s) 98, 573, 1018, 1133, 1138
BstFNI CGCG 1 cut(s) 969
BstHHI GCGC 2 cut(s) 420, 971
BstKTI GATC 6 cut(s) 114, 209, 480, 672, 777, 1138
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
BstMWI GCNNNNNNNGC 5 cut(s) 158, 443, 452, 461, 464
BstNI CCWGG 3 cut(s) 1032, 1080, 1165
BstNSI RCATGY 1 cut(s) 598
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 4 cut(s) 1030, 1072, 1078, 1163
BstSFI CTRYAG 4 cut(s) 258, 264, 837, 915
BstUI CGCG 1 cut(s) 969
BstV1I GCAGC 7 cut(s) 148, 272, 445, 448, 451, 467, 814
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 4 cut(s) 768, 835, 986, 1065
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 5 cut(s) 98, 573, 1018, 1133, 1138
BtsIMutI CAGTG 3 cut(s) 69, 640, 1024
Cac8I GCNNGC 2 cut(s) 373, 994
CaiI CAGNNNCTG 2 cut(s) 449, 461
CciI TCATGA 1 cut(s) 546
CfoI GCGC 2 cut(s) 420, 971
Cfr10I RCCGGY 1 cut(s) 1109
Cfr13I GGNCC 3 cut(s) 329, 1063, 1076
Csp6I GTAC 1 cut(s) 534
CviAII CATG 5 cut(s) 379, 547, 595, 644, 755
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 3 cut(s) 398, 564, 823
DpnI GATC 6 cut(s) 113, 208, 479, 671, 776, 1137
DpnII GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
Eco130I CCWWGG 2 cut(s) 422, 976
Eco24I GRGCYC 1 cut(s) 1101
Eco47I GGWCC 2 cut(s) 329, 1076
Eco91I GGTNACC 1 cut(s) 655
EcoNI CCTNNNNNAGG 3 cut(s) 840, 980, 1035
EcoO65I GGTNACC 1 cut(s) 655
EcoRII CCWGG 3 cut(s) 1030, 1078, 1163
EcoT14I CCWWGG 2 cut(s) 422, 976
EcoT22I ATGCAT 1 cut(s) 645
EcoT38I GRGCYC 1 cut(s) 1101
ErhI CCWWGG 2 cut(s) 422, 976
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 5 cut(s) 382, 550, 598, 647, 758
FatI CATG 5 cut(s) 378, 546, 594, 643, 754
FbaI TGATCA 1 cut(s) 669
FokI GGATG 5 cut(s) 105, 560, 1025, 1140, 1145
FriOI GRGCYC 1 cut(s) 1101
FspBI CTAG 4 cut(s) 521, 599, 663, 789
GlaI GCGC 2 cut(s) 419, 970
HaeIII GGCC 4 cut(s) 768, 835, 986, 1065
HapII CCGG 3 cut(s) 170, 1074, 1110
HhaI GCGC 2 cut(s) 420, 971
Hin1II CATG 5 cut(s) 382, 550, 598, 647, 758
Hin6I GCGC 2 cut(s) 418, 969
HinP1I GCGC 2 cut(s) 418, 969
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 4 cut(s) 525, 692, 714, 1150
HpaII CCGG 3 cut(s) 170, 1074, 1110
HphI GGTGA 3 cut(s) 847, 1037, 1046
Hpy166II GTNNAC 2 cut(s) 194, 855
Hpy188I TCNGA 2 cut(s) 508, 1149
Hpy188III TCNNGA 6 cut(s) 191, 204, 386, 475, 547, 722
Hpy8I GTNNAC 2 cut(s) 194, 855
Hpy99I CGWCG 1 cut(s) 1001
HpyAV CCTTC 2 cut(s) 698, 1031
HpyCH4III ACNGT 5 cut(s) 80, 326, 512, 1019, 1145
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 9 cut(s) 8, 164, 260, 274, 437, 455, 583, 643, 1004
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 443, 452, 461, 464
HpyF3I CTNAG 3 cut(s) 398, 564, 823
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 5 cut(s) 382, 550, 598, 647, 758
HspAI GCGC 2 cut(s) 418, 969
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
LguI GCTCTTC 1 cut(s) 1089
LmnI GCTCC 2 cut(s) 451, 629
Lsp1109I GCAGC 7 cut(s) 148, 272, 445, 448, 451, 467, 814
LweI GCATC 1 cut(s) 991
MaeI CTAG 4 cut(s) 521, 599, 663, 789
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 3 cut(s) 655, 707, 1159
MalI GATC 6 cut(s) 113, 208, 479, 671, 776, 1137
MbiI CCGCTC 1 cut(s) 752
MboI GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
MboII GAAGA 6 cut(s) 520, 740, 769, 811, 1103, 1106
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 570, 1101
MluCI AATT 9 cut(s) 9, 55, 342, 486, 799, 901, 939, 1058, 1168
MnlI CCTC 5 cut(s) 177, 528, 670, 718, 976
Mph1103I ATGCAT 1 cut(s) 645
MroXI GAANNNNTTC 2 cut(s) 502, 1041
MseI TTAA 4 cut(s) 890, 900, 942, 963
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 3 cut(s) 170, 1074, 1110
MspR9I CCNGG 4 cut(s) 1032, 1074, 1080, 1165
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 3 cut(s) 1032, 1080, 1165
MvnI CGCG 1 cut(s) 969
MwoI GCNNNNNNNGC 5 cut(s) 158, 443, 452, 461, 464
NciI CCSGG 1 cut(s) 1074
NdeII GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
NlaIII CATG 5 cut(s) 382, 550, 598, 647, 758
NlaIV GGNNCC 2 cut(s) 241, 625
NmuCI GTSAC 1 cut(s) 1159
NsiI ATGCAT 1 cut(s) 645
NspI RCATGY 1 cut(s) 598
PagI TCATGA 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 1089
PdmI GAANNNNTTC 2 cut(s) 502, 1041
PfeI GAWTC 4 cut(s) 525, 692, 714, 1150
PfoI TCCNGGA 1 cut(s) 1078
PshBI ATTAAT 1 cut(s) 942
PsiI TTATAA 1 cut(s) 738
Psp6I CCWGG 3 cut(s) 1030, 1078, 1163
PspEI GGTNACC 1 cut(s) 655
PspGI CCWGG 3 cut(s) 1030, 1078, 1163
PspN4I GGNNCC 2 cut(s) 241, 625
PspPI GGNCC 3 cut(s) 329, 1063, 1076
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 2 cut(s) 449, 461
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 1089
SaqAI TTAA 4 cut(s) 890, 900, 942, 963
Sau3AI GATC 6 cut(s) 111, 206, 477, 669, 774, 1135
Sau96I GGNCC 3 cut(s) 329, 1063, 1076
ScrFI CCNGG 4 cut(s) 1032, 1074, 1080, 1165
SduI GDGCHC 2 cut(s) 570, 1101
SfaNI GCATC 1 cut(s) 991
SfcI CTRYAG 4 cut(s) 258, 264, 837, 915
SinI GGWCC 2 cut(s) 329, 1076
SmiMI CAYNNNNRTG 1 cut(s) 578
Sse9I AATT 9 cut(s) 9, 55, 342, 486, 799, 901, 939, 1058, 1168
SsiI CCGC 6 cut(s) 129, 296, 621, 750, 858, 967
SspI AATATT 1 cut(s) 229
SspMI CTAG 4 cut(s) 521, 599, 663, 789
StyD4I CCNGG 4 cut(s) 1030, 1072, 1078, 1163
StyI CCWWGG 2 cut(s) 422, 976
TaaI ACNGT 5 cut(s) 80, 326, 512, 1019, 1145
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 934
TaqII GACCGA 1 cut(s) 707
TasI AATT 9 cut(s) 9, 55, 342, 486, 799, 901, 939, 1058, 1168
TauI GCSGC 3 cut(s) 299, 624, 752
TfiI GAWTC 4 cut(s) 525, 692, 714, 1150
Tru1I TTAA 4 cut(s) 890, 900, 942, 963
Tru9I TTAA 4 cut(s) 890, 900, 942, 963
TscAI CASTG 3 cut(s) 76, 640, 1024
TseFI GTSAC 1 cut(s) 1159
TseI GCWGC 7 cut(s) 161, 260, 455, 458, 461, 464, 827
Tsp45I GTSAC 1 cut(s) 1159
TspDTI ATGAA 5 cut(s) 145, 324, 535, 705, 717
TspGWI ACGGA 3 cut(s) 234, 292, 395
TspRI CASTG 3 cut(s) 76, 640, 1024
VpaK11BI GGWCC 2 cut(s) 329, 1076
VspI ATTAAT 1 cut(s) 942
XagI CCTNNNNNAGG 3 cut(s) 840, 980, 1035
XceI RCATGY 1 cut(s) 598
XmnI GAANNNNTTC 2 cut(s) 502, 1041
XspI CTAG 4 cut(s) 521, 599, 663, 789
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.