Rw6G019460

Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005369
Physical Location & Seq
Reverse (-)
38827972 .. 38829064
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019460.1

Sequence Viewer

Length: 1023 bp
ATGACTGCAATTTTAGAGAGACGTGAAAGCGAAAGCCTATGGGGTCGCTTTTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTGCACGTACTTTTACCCAATATGGGAAGTGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGATTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTGTCACGCCCCTGATTTTTAACACAAATAAAAATCGATATATAATCTTAAAATTATACACGAGTGCTGGTTCAGCTATCAATACAAAATACCTGGAAAACTTTTTCCCTTTTAAATCAAGTGCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

340

Amino Acids

38.17

Weight (kDa)

5.5

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 28 - 296 1.1e-78 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
AccBSI CCGCTC 1 cut(s) 686
AciI CCGC 4 cut(s) 129, 555, 684, 792
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 700
AfaI GTAC 2 cut(s) 209, 469
AfiI CCNNNNNNNGG 2 cut(s) 223, 776
AgsI TTSAA 4 cut(s) 475, 730, 820, 841
AjiI CACGTC 1 cut(s) 23
AjnI CCWGG 1 cut(s) 984
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 8 cut(s) 274, 305, 380, 392, 435, 497, 761, 968
AluI AGCT 8 cut(s) 274, 305, 380, 392, 435, 497, 761, 968
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 2 cut(s) 700, 767
ApeKI GCWGC 4 cut(s) 161, 389, 392, 761
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 1 cut(s) 436
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 781
AvaII GGWCC 1 cut(s) 263
BauI CACGAG 1 cut(s) 952
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 4 cut(s) 148, 379, 401, 748
BccI CCATC 2 cut(s) 87, 176
BciT130I CCWGG 1 cut(s) 986
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 4 cut(s) 455, 533, 597, 723
BfmI CTRYAG 2 cut(s) 771, 849
BisI GCNGC 6 cut(s) 162, 390, 393, 556, 684, 762
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 6 cut(s) 163, 391, 394, 557, 685, 763
Bme1390I CCNGG 1 cut(s) 986
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 1 cut(s) 986
Bpu1102I GCTNAGC 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 928
BsaAI YACGTR 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 356
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 776
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 986
BseCI ATCGAT 1 cut(s) 928
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 2 cut(s) 98, 507
BseLI CCNNNNNNNGG 2 cut(s) 223, 776
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 489
BseXI GCAGC 4 cut(s) 148, 379, 401, 748
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 2 cut(s) 702, 769
BshVI ATCGAT 1 cut(s) 928
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 223, 776
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 2 cut(s) 702, 769
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 111, 411, 603, 708
Bsp1720I GCTNAGC 1 cut(s) 498
BspACI CCGC 4 cut(s) 129, 555, 684, 792
BspANI GGCC 2 cut(s) 702, 769
BspCNI CTCAG 1 cut(s) 490
BspDI ATCGAT 1 cut(s) 928
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 559
BspPI GGATC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 4 cut(s) 111, 411, 603, 708
BssSI CACGAG 1 cut(s) 952
BssT1I CCWWGG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 952
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 3 cut(s) 80, 260, 446
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 3 cut(s) 332, 498, 757
BstEII GGTNACC 1 cut(s) 589
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 98, 507
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 4 cut(s) 114, 414, 606, 711
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 4 cut(s) 111, 411, 603, 708
BstMWI GCNNNNNNNGC 5 cut(s) 158, 377, 386, 398, 965
BstNI CCWGG 1 cut(s) 986
BstNSI RCATGY 1 cut(s) 532
BstPI GGTNACC 1 cut(s) 589
BstSCI CCNGG 1 cut(s) 984
BstSFI CTRYAG 2 cut(s) 771, 849
BstV1I GCAGC 4 cut(s) 148, 379, 401, 748
Bsu15I ATCGAT 1 cut(s) 928
BsuRI GGCC 2 cut(s) 702, 769
BsuTUI ATCGAT 1 cut(s) 928
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 98, 507
BtsIMutI CAGTG 2 cut(s) 69, 574
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 1 cut(s) 480
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 928
Csp6I GTAC 2 cut(s) 208, 468
CviAII CATG 5 cut(s) 313, 481, 529, 578, 689
CviQI GTAC 2 cut(s) 208, 468
DdeI CTNAG 3 cut(s) 332, 498, 757
DpnI GATC 4 cut(s) 113, 413, 605, 710
DpnII GATC 4 cut(s) 111, 411, 603, 708
DraI TTTAAA 1 cut(s) 1006
EaeI YGGCCR 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 589
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoO65I GGTNACC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 5 cut(s) 316, 484, 532, 581, 692
FatI CATG 5 cut(s) 312, 480, 528, 577, 688
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 6 cut(s) 162, 390, 393, 556, 684, 762
FokI GGATG 2 cut(s) 105, 494
Fsp4HI GCNGC 6 cut(s) 162, 390, 393, 556, 684, 762
FspBI CTAG 4 cut(s) 455, 533, 597, 723
GlaI GCGC 1 cut(s) 353
GluI GCNGC 6 cut(s) 162, 390, 393, 556, 684, 762
HaeIII GGCC 2 cut(s) 702, 769
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 354
Hin1II CATG 5 cut(s) 316, 484, 532, 581, 692
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 3 cut(s) 459, 626, 648
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 781
Hpy166II GTNNAC 2 cut(s) 194, 789
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 5 cut(s) 191, 320, 409, 481, 656
Hpy8I GTNNAC 2 cut(s) 194, 789
HpyAV CCTTC 1 cut(s) 632
HpyCH4III ACNGT 3 cut(s) 80, 260, 446
HpyCH4IV ACGT 2 cut(s) 22, 206
HpyCH4V TGCA 8 cut(s) 8, 164, 204, 371, 389, 517, 577, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 377, 386, 398, 965
HpyF3I CTNAG 3 cut(s) 332, 498, 757
HpySE526I ACGT 2 cut(s) 22, 206
Hsp92II CATG 5 cut(s) 316, 484, 532, 581, 692
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 4 cut(s) 111, 411, 603, 708
LmnI GCTCC 2 cut(s) 385, 563
Lsp1109I GCAGC 4 cut(s) 148, 379, 401, 748
MaeI CTAG 4 cut(s) 455, 533, 597, 723
MaeII ACGT 2 cut(s) 22, 206
MaeIII GTNAC 3 cut(s) 589, 641, 895
MalI GATC 4 cut(s) 113, 413, 605, 710
MbiI CCGCTC 1 cut(s) 686
MboI GATC 4 cut(s) 111, 411, 603, 708
MboII GAAGA 3 cut(s) 674, 703, 745
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 8 cut(s) 9, 55, 276, 420, 733, 835, 873, 944
MnlI CCTC 4 cut(s) 177, 462, 604, 652
Mph1103I ATGCAT 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 6 cut(s) 824, 834, 876, 912, 941, 1005
MslI CAYNNNNRTG 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 986
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 986
MwoI GCNNNNNNNGC 5 cut(s) 158, 377, 386, 398, 965
NdeII GATC 4 cut(s) 111, 411, 603, 708
NlaIII CATG 5 cut(s) 316, 484, 532, 581, 692
NlaIV GGNNCC 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 895
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 1 cut(s) 532
PagI TCATGA 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 3 cut(s) 459, 626, 648
PkrI GCNGC 6 cut(s) 163, 391, 394, 557, 685, 763
Ppu21I YACGTR 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 876
PsiI TTATAA 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 984
PspEI GGTNACC 1 cut(s) 589
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 263
PstNI CAGNNNCTG 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 209, 469
RsaNI GTAC 2 cut(s) 208, 468
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 6 cut(s) 824, 834, 876, 912, 941, 1005
SatI GCNGC 6 cut(s) 162, 390, 393, 556, 684, 762
Sau3AI GATC 4 cut(s) 111, 411, 603, 708
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 986
SduI GDGCHC 1 cut(s) 504
SfcI CTRYAG 2 cut(s) 771, 849
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 512
Sse9I AATT 8 cut(s) 9, 55, 276, 420, 733, 835, 873, 944
SsiI CCGC 4 cut(s) 129, 555, 684, 792
SspMI CTAG 4 cut(s) 455, 533, 597, 723
StyD4I CCNGG 1 cut(s) 984
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 3 cut(s) 80, 260, 446
TaiI ACGT 2 cut(s) 25, 209
TaqI TCGA 1 cut(s) 928
TaqII GACCGA 1 cut(s) 641
TasI AATT 8 cut(s) 9, 55, 276, 420, 733, 835, 873, 944
TauI GCSGC 2 cut(s) 558, 686
TfiI GAWTC 3 cut(s) 459, 626, 648
Tru1I TTAA 6 cut(s) 824, 834, 876, 912, 941, 1005
Tru9I TTAA 6 cut(s) 824, 834, 876, 912, 941, 1005
TscAI CASTG 2 cut(s) 76, 574
TseFI GTSAC 1 cut(s) 895
TseI GCWGC 4 cut(s) 161, 389, 392, 761
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 5 cut(s) 145, 258, 469, 639, 651
TspGWI ACGGA 2 cut(s) 226, 329
TspRI CASTG 2 cut(s) 76, 574
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 1 cut(s) 876
XagI CCTNNNNNAGG 1 cut(s) 774
XceI RCATGY 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 4 cut(s) 455, 533, 597, 723
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.