RLG00000029143

Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005369
Physical Location & Seq
Reverse (-)
33656528 .. 33660948
4421 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029143

Sequence Viewer

Length: 1068 bp
ATGGCGAATGGATCGCCTGGAGTGCATGACGTCCTCCTCGACGATATCCAAGGGAAGGACGACGGCGGGGTAGACCCAGAGGGCGATCTGCCAGGTCAGCAGGGAGAGGAAGAGCGAGGAAGGCTTCCGACGACTCCGGAGGAGGAGGGAAGATCTTTACTTTACGGAAACAATATTATTTCTTGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCCGTTGATAAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATTGCTGTTGCATATTTAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCGGACGGTATGCCTCTAGGAATCTCTGGTACTATCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTCGGCGGCTCCCTATTAAGTTCTATGCATGGTTCTTTGGTAACCTCTAGTTTGAACAGGGAAACCGCAGAAAATGAATTTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCATAGCCACTCATGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGATTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTATAATTAATACTTGGGCTGATATTATTAACTGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGGCCTAGCTGCTGTTGAAGTTCCATCTATCAATGGATATGACTTTGGTCTTAATATATATGAGTTCGTGAAAGTTTTGAAAGTAAAGGAGCAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

356

Amino Acids

39.06

Weight (kDa)

4.83

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 51 - 309 1.6e-79 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AatII GACGTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 5 cut(s) 66, 242, 567, 627, 804
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 1 cut(s) 638
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 4 cut(s) 55, 235, 788, 928
AgsI TTSAA 6 cut(s) 616, 742, 832, 853, 986, 1048
AjnI CCWGG 2 cut(s) 16, 91
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 9 cut(s) 209, 286, 317, 392, 404, 447, 509, 773, 977
AluI AGCT 9 cut(s) 209, 286, 317, 392, 404, 447, 509, 773, 977
Alw21I GWGCWC 1 cut(s) 516
AlwI GGATC 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 3 cut(s) 712, 779, 970
ApeKI GCWGC 5 cut(s) 206, 401, 404, 773, 977
ApoI RAATTY 1 cut(s) 638
AseI ATTAAT 1 cut(s) 888
Asp700I GAANNNNTTC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 917
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 793
AvaII GGWCC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 5 cut(s) 218, 391, 413, 760, 964
BccI CCATC 1 cut(s) 1000
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 18, 93
BfaI CTAG 6 cut(s) 467, 545, 609, 735, 968, 974
BfmI CTRYAG 4 cut(s) 204, 210, 783, 861
BglII AGATCT 1 cut(s) 152
BisI GCNGC 7 cut(s) 207, 243, 402, 405, 568, 774, 978
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 7 cut(s) 208, 244, 403, 406, 569, 775, 979
Bme1390I CCNGG 2 cut(s) 18, 93
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 2 cut(s) 18, 93
BoxI GACNNNNGTC 1 cut(s) 1014
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 49, 368, 922
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 235, 788, 928
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 2 cut(s) 18, 93
BseDI CCNNGG 3 cut(s) 49, 368, 922
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 4 cut(s) 55, 235, 788, 928
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 3 cut(s) 26, 155, 158
BseXI GCAGC 5 cut(s) 218, 391, 413, 760, 964
BshFI GGCC 3 cut(s) 714, 781, 972
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 4 cut(s) 55, 235, 788, 928
BsnI GGCC 3 cut(s) 714, 781, 972
Bsp1286I GDGCHC 1 cut(s) 516
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 4 cut(s) 11, 85, 152, 423
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 5 cut(s) 66, 242, 567, 627, 804
BspANI GGCC 3 cut(s) 714, 781, 972
BspCNI CTCAG 1 cut(s) 502
BspEI TCCGGA 1 cut(s) 136
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 105
BssECI CCNNGG 3 cut(s) 49, 368, 922
BssMI GATC 4 cut(s) 11, 85, 152, 423
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 3 cut(s) 49, 368, 922
Bst2UI CCWGG 2 cut(s) 18, 93
Bst4CI ACNGT 2 cut(s) 272, 458
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 344, 510, 769
BstEII GGTNACC 1 cut(s) 601
BstENI CCTNNNNNAGG 1 cut(s) 786
BstF5I GGATG 1 cut(s) 519
BstHHI GCGC 1 cut(s) 917
BstKTI GATC 4 cut(s) 14, 88, 155, 426
BstMBI GATC 4 cut(s) 11, 85, 152, 423
BstMWI GCNNNNNNNGC 6 cut(s) 22, 97, 121, 389, 398, 410
BstNI CCWGG 2 cut(s) 18, 93
BstNSI RCATGY 1 cut(s) 544
BstPAI GACNNNNGTC 1 cut(s) 1014
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 2 cut(s) 16, 91
BstSFI CTRYAG 4 cut(s) 204, 210, 783, 861
BstV1I GCAGC 5 cut(s) 218, 391, 413, 760, 964
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 3 cut(s) 714, 781, 972
BtsCI GGATG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 319
CciI TCATGA 1 cut(s) 492
CfoI GCGC 1 cut(s) 917
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 480
CviAII CATG 6 cut(s) 26, 493, 541, 590, 701, 941
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 3 cut(s) 344, 510, 769
DpnI GATC 4 cut(s) 13, 87, 154, 425
DpnII GATC 4 cut(s) 11, 85, 152, 423
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 3 cut(s) 49, 368, 922
Eco147I AGGCCT 1 cut(s) 972
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 275
Eco91I GGTNACC 1 cut(s) 601
EcoNI CCTNNNNNAGG 1 cut(s) 786
EcoO65I GGTNACC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 16, 91
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 3 cut(s) 49, 368, 922
EcoT22I ATGCAT 2 cut(s) 591, 942
ErhI CCWWGG 3 cut(s) 49, 368, 922
FaeI CATG 6 cut(s) 29, 496, 544, 593, 704, 944
FatI CATG 6 cut(s) 25, 492, 540, 589, 700, 940
FauI CCCGC 1 cut(s) 59
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 7 cut(s) 207, 243, 402, 405, 568, 774, 978
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 7 cut(s) 207, 243, 402, 405, 568, 774, 978
FspBI CTAG 6 cut(s) 467, 545, 609, 735, 968, 974
GlaI GCGC 1 cut(s) 916
GluI GCNGC 7 cut(s) 207, 243, 402, 405, 568, 774, 978
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 3 cut(s) 714, 781, 972
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 917
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 6 cut(s) 29, 496, 544, 593, 704, 944
Hin6I GCGC 1 cut(s) 915
HinP1I GCGC 1 cut(s) 915
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 3 cut(s) 133, 471, 660
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 793
Hpy166II GTNNAC 2 cut(s) 73, 801
Hpy188I TCNGA 2 cut(s) 129, 454
Hpy188III TCNNGA 6 cut(s) 137, 332, 421, 493, 668, 1036
Hpy8I GTNNAC 2 cut(s) 73, 801
Hpy99I CGWCG 3 cut(s) 44, 65, 133
HpyAV CCTTC 3 cut(s) 49, 114, 644
HpyCH4III ACNGT 2 cut(s) 272, 458
HpyCH4IV ACGT 2 cut(s) 30, 946
HpyCH4V TGCA 9 cut(s) 25, 206, 220, 364, 383, 401, 529, 589, 940
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 97, 121, 389, 398, 410
HpyF3I CTNAG 3 cut(s) 344, 510, 769
HpySE526I ACGT 2 cut(s) 30, 946
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 6 cut(s) 29, 496, 544, 593, 704, 944
HspAI GCGC 1 cut(s) 915
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 11, 85, 152, 423
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 3 cut(s) 397, 575, 1057
Lsp1109I GCAGC 5 cut(s) 218, 391, 413, 760, 964
MaeI CTAG 6 cut(s) 467, 545, 609, 735, 968, 974
MaeII ACGT 2 cut(s) 30, 946
MaeIII GTNAC 2 cut(s) 601, 653
MalI GATC 4 cut(s) 13, 87, 154, 425
MboI GATC 4 cut(s) 11, 85, 152, 423
MboII GAAGA 4 cut(s) 122, 162, 686, 757
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 7 cut(s) 288, 432, 638, 745, 847, 885, 958
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 152
Mph1103I ATGCAT 2 cut(s) 591, 942
MroI TCCGGA 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 448
MseI TTAA 6 cut(s) 578, 836, 846, 888, 909, 1020
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 18, 93
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 2 cut(s) 18, 93
MwoI GCNNNNNNNGC 6 cut(s) 22, 97, 121, 389, 398, 410
NdeII GATC 4 cut(s) 11, 85, 152, 423
NlaIII CATG 6 cut(s) 29, 496, 544, 593, 704, 944
NlaIV GGNNCC 1 cut(s) 571
NsiI ATGCAT 2 cut(s) 591, 942
NspI RCATGY 1 cut(s) 544
PagI TCATGA 1 cut(s) 492
PceI AGGCCT 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 448
PfeI GAWTC 2 cut(s) 471, 660
PkrI GCNGC 7 cut(s) 208, 244, 403, 406, 569, 775, 979
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PshAI GACNNNNGTC 1 cut(s) 1014
PshBI ATTAAT 1 cut(s) 888
PsiI TTATAA 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 16, 91
PspEI GGTNACC 1 cut(s) 601
PspGI CCWGG 2 cut(s) 16, 91
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 6 cut(s) 578, 836, 846, 888, 909, 1020
SatI GCNGC 7 cut(s) 207, 243, 402, 405, 568, 774, 978
Sau3AI GATC 4 cut(s) 11, 85, 152, 423
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 2 cut(s) 18, 93
SduI GDGCHC 1 cut(s) 516
SfcI CTRYAG 4 cut(s) 204, 210, 783, 861
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 7 cut(s) 288, 432, 638, 745, 847, 885, 958
SseBI AGGCCT 1 cut(s) 972
SsiI CCGC 5 cut(s) 66, 242, 567, 627, 804
SspI AATATT 1 cut(s) 175
SspMI CTAG 6 cut(s) 467, 545, 609, 735, 968, 974
StuI AGGCCT 1 cut(s) 972
StyD4I CCNGG 2 cut(s) 16, 91
StyI CCWWGG 3 cut(s) 49, 368, 922
TaaI ACNGT 2 cut(s) 272, 458
TaiI ACGT 2 cut(s) 33, 949
TaqI TCGA 1 cut(s) 39
TaqII GACCGA 1 cut(s) 653
TasI AATT 7 cut(s) 288, 432, 638, 745, 847, 885, 958
TauI GCSGC 2 cut(s) 245, 570
TfiI GAWTC 2 cut(s) 471, 660
Tru1I TTAA 6 cut(s) 578, 836, 846, 888, 909, 1020
Tru9I TTAA 6 cut(s) 578, 836, 846, 888, 909, 1020
TseI GCWGC 5 cut(s) 206, 401, 404, 773, 977
TspDTI ATGAA 4 cut(s) 481, 651, 663, 957
TspGWI ACGGA 3 cut(s) 180, 238, 341
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 888
XagI CCTNNNNNAGG 1 cut(s) 786
XapI RAATTY 1 cut(s) 638
XceI RCATGY 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 448
XspI CTAG 6 cut(s) 467, 545, 609, 735, 968, 974
ZraI GACGTC 1 cut(s) 31
Zsp2I ATGCAT 2 cut(s) 591, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.