Rroxscaffold_2G00119130

Photosynthetic reaction centre protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005369
Physical Location & Seq
Forward (+)
50918180 .. 50925085
6906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119130.1

Sequence Viewer

Length: 1233 bp
ATGGGGCGTGGCCAAGTGGTAAGGCAACGGGTTTTGGTCCCGCTACTCGGAGGTTCGAATCCTTCCGTCCCAGAGCATACCCCATGTACTAATACCCTACCCCATTCATCTGGAAATCTTGGTTCAAACCCTTCGCTACTGCGTGAAAGATCCCTCTTCTTTGCATTTATTACGGCTCTTTCTTCACGAAGACGTGAAAGCGAAAGCCTATGGGGTCGCTTTTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCCGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTGTCAGCACTATGGCTTTCAACTTAAATGGATTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGAAGTTCCATCTATCAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

410

Amino Acids

45.04

Weight (kDa)

5.83

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 85 - 384 2.2e-93 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AccB1I GGYRCC 1 cut(s) 410
AccBSI CCGCTC 1 cut(s) 923
AccII CGCG 1 cut(s) 1140
AciI CCGC 7 cut(s) 41, 300, 467, 792, 921, 1029, 1138
AclWI GGATC 3 cut(s) 144, 277, 385
AcoI YGGCCR 2 cut(s) 10, 937
AfaI GTAC 2 cut(s) 88, 706
AfiI CCNNNNNNNGG 5 cut(s) 47, 374, 460, 1013, 1153
AgsI TTSAA 6 cut(s) 126, 712, 967, 1057, 1078, 1211
AjiI CACGTC 1 cut(s) 194
AloI GAACNNNNNNTCC 2 cut(s) 558, 590
AluBI AGCT 9 cut(s) 434, 511, 542, 617, 629, 672, 734, 998, 1202
AluI AGCT 9 cut(s) 434, 511, 542, 617, 629, 672, 734, 998, 1202
Alw21I GWGCWC 1 cut(s) 741
AlwI GGATC 3 cut(s) 144, 277, 385
AlwNI CAGNNNCTG 1 cut(s) 620
AoxI GGCC 3 cut(s) 10, 937, 1004
ApeKI GCWGC 6 cut(s) 332, 431, 626, 629, 998, 1202
AseI ATTAAT 1 cut(s) 1113
Asp700I GAANNNNTTC 1 cut(s) 673
AspLEI GCGC 2 cut(s) 591, 1142
AspS9I GGNCC 2 cut(s) 37, 500
AsuHPI GGTGA 1 cut(s) 1018
AsuII TTCGAA 1 cut(s) 56
AvaII GGWCC 2 cut(s) 37, 500
BalI TGGCCA 1 cut(s) 12
BanI GGYRCC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 6 cut(s) 319, 443, 616, 638, 985, 1189
BccI CCATC 3 cut(s) 258, 347, 1225
BceAI ACGGC 1 cut(s) 189
BclI TGATCA 1 cut(s) 840
BfaI CTAG 6 cut(s) 692, 770, 834, 960, 1193, 1199
BfmI CTRYAG 4 cut(s) 429, 435, 1008, 1086
BisI GCNGC 9 cut(s) 333, 432, 468, 627, 630, 793, 921, 999, 1203
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 9 cut(s) 334, 433, 469, 628, 631, 794, 922, 1000, 1204
Bme18I GGWCC 2 cut(s) 37, 500
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 37, 500
BmiI GGNNCC 3 cut(s) 39, 412, 796
BpiI GAAGAC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 593, 1147
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 374, 460, 1013, 1153
Bse3DI GCAATG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 593, 1147
BseGI GGATG 2 cut(s) 269, 744
BseLI CCNNNNNNNGG 5 cut(s) 47, 374, 460, 1013, 1153
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 726
BseXI GCAGC 6 cut(s) 319, 443, 616, 638, 985, 1189
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 1140
BshFI GGCC 3 cut(s) 12, 939, 1006
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 2 cut(s) 23, 53
BslI CCNNNNNNNGG 5 cut(s) 47, 374, 460, 1013, 1153
BsmFI GGGAC 2 cut(s) 23, 53
BsnI GGCC 3 cut(s) 12, 939, 1006
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 6 cut(s) 149, 282, 377, 648, 840, 945
Bsp1720I GCTNAGC 1 cut(s) 735
BspACI CCGC 7 cut(s) 41, 300, 467, 792, 921, 1029, 1138
BspANI GGCC 3 cut(s) 12, 939, 1006
BspCNI CTCAG 1 cut(s) 727
BspFNI CGCG 1 cut(s) 1140
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 3 cut(s) 39, 412, 796
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 3 cut(s) 144, 277, 385
BspT104I TTCGAA 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 410
BsrBI CCGCTC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 593, 1147
BssMI GATC 6 cut(s) 149, 282, 377, 648, 840, 945
BssT1I CCWWGG 2 cut(s) 593, 1147
Bst4CI ACNGT 4 cut(s) 251, 497, 683, 818
Bst6I CTCTTC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 569, 735, 994
BstEII GGTNACC 1 cut(s) 826
BstENI CCTNNNNNAGG 1 cut(s) 1011
BstF5I GGATG 2 cut(s) 269, 744
BstFNI CGCG 1 cut(s) 1140
BstHHI GCGC 2 cut(s) 591, 1142
BstKTI GATC 6 cut(s) 152, 285, 380, 651, 843, 948
BstMBI GATC 6 cut(s) 149, 282, 377, 648, 840, 945
BstMWI GCNNNNNNNGC 4 cut(s) 329, 614, 623, 635
BstNSI RCATGY 1 cut(s) 769
BstPI GGTNACC 1 cut(s) 826
BstSFI CTRYAG 4 cut(s) 429, 435, 1008, 1086
BstUI CGCG 1 cut(s) 1140
BstV1I GCAGC 6 cut(s) 319, 443, 616, 638, 985, 1189
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 149, 377
BstXI CCANNNNNNTGG 1 cut(s) 110
BstYI RGATCY 2 cut(s) 149, 377
BsuRI GGCC 3 cut(s) 12, 939, 1006
BtrI CACGTC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 269, 744
BtsIMutI CAGTG 2 cut(s) 240, 811
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 717
CfoI GCGC 2 cut(s) 591, 1142
Cfr13I GGNCC 2 cut(s) 37, 500
Csp6I GTAC 2 cut(s) 87, 705
CviAII CATG 6 cut(s) 84, 550, 718, 766, 926, 1166
CviQI GTAC 2 cut(s) 87, 705
DdeI CTNAG 3 cut(s) 569, 735, 994
DpnI GATC 6 cut(s) 151, 284, 379, 650, 842, 947
DpnII GATC 6 cut(s) 149, 282, 377, 648, 840, 945
EaeI YGGCCR 2 cut(s) 10, 937
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 593, 1147
Eco47I GGWCC 2 cut(s) 37, 500
Eco91I GGTNACC 1 cut(s) 826
EcoNI CCTNNNNNAGG 1 cut(s) 1011
EcoO65I GGTNACC 1 cut(s) 826
EcoT14I CCWWGG 2 cut(s) 593, 1147
EcoT22I ATGCAT 1 cut(s) 1167
ErhI CCWWGG 2 cut(s) 593, 1147
FaeI CATG 6 cut(s) 87, 553, 721, 769, 929, 1169
FaqI GGGAC 2 cut(s) 23, 53
FatI CATG 6 cut(s) 83, 549, 717, 765, 925, 1165
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 9 cut(s) 333, 432, 468, 627, 630, 793, 921, 999, 1203
FokI GGATG 2 cut(s) 276, 731
Fsp4HI GCNGC 9 cut(s) 333, 432, 468, 627, 630, 793, 921, 999, 1203
FspBI CTAG 6 cut(s) 692, 770, 834, 960, 1193, 1199
GlaI GCGC 2 cut(s) 590, 1141
GluI GCNGC 9 cut(s) 333, 432, 468, 627, 630, 793, 921, 999, 1203
HaeIII GGCC 3 cut(s) 12, 939, 1006
HapII CCGG 1 cut(s) 341
HhaI GCGC 2 cut(s) 591, 1142
Hin1II CATG 6 cut(s) 87, 553, 721, 769, 929, 1169
Hin6I GCGC 2 cut(s) 589, 1140
HinP1I GCGC 2 cut(s) 589, 1140
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 4 cut(s) 58, 696, 863, 885
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 1018
Hpy166II GTNNAC 2 cut(s) 365, 1026
Hpy188I TCNGA 2 cut(s) 50, 679
Hpy188III TCNNGA 9 cut(s) 111, 186, 362, 375, 557, 646, 718, 893, 1193
Hpy8I GTNNAC 2 cut(s) 365, 1026
HpyAV CCTTC 3 cut(s) 72, 141, 869
HpyCH4III ACNGT 4 cut(s) 251, 497, 683, 818
HpyCH4IV ACGT 2 cut(s) 193, 1171
HpyCH4V TGCA 9 cut(s) 164, 335, 431, 445, 608, 626, 754, 814, 1165
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 614, 623, 635
HpyF3I CTNAG 3 cut(s) 569, 735, 994
HpySE526I ACGT 2 cut(s) 193, 1171
Hsp92II CATG 6 cut(s) 87, 553, 721, 769, 929, 1169
HspAI GCGC 2 cut(s) 589, 1140
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 6 cut(s) 149, 282, 377, 648, 840, 945
LmnI GCTCC 2 cut(s) 622, 800
Lsp1109I GCAGC 6 cut(s) 319, 443, 616, 638, 985, 1189
MaeI CTAG 6 cut(s) 692, 770, 834, 960, 1193, 1199
MaeII ACGT 2 cut(s) 193, 1171
MaeIII GTNAC 2 cut(s) 826, 878
MalI GATC 6 cut(s) 151, 284, 379, 650, 842, 947
MbiI CCGCTC 1 cut(s) 923
MboI GATC 6 cut(s) 149, 282, 377, 648, 840, 945
MboII GAAGA 6 cut(s) 148, 174, 201, 911, 940, 982
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 2 cut(s) 149, 377
MhlI GDGCHC 1 cut(s) 741
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 7 cut(s) 226, 513, 657, 970, 1072, 1110, 1183
MluNI TGGCCA 1 cut(s) 12
MnlI CCTC 7 cut(s) 44, 164, 348, 699, 841, 889, 1200
Mox20I TGGCCA 1 cut(s) 12
Mph1103I ATGCAT 1 cut(s) 1167
MroXI GAANNNNTTC 1 cut(s) 673
MscI TGGCCA 1 cut(s) 12
MseI TTAA 4 cut(s) 1061, 1071, 1113, 1134
MslI CAYNNNNRTG 1 cut(s) 749
Msp20I TGGCCA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 657
MvnI CGCG 1 cut(s) 1140
MwoI GCNNNNNNNGC 4 cut(s) 329, 614, 623, 635
NdeII GATC 6 cut(s) 149, 282, 377, 648, 840, 945
NlaIII CATG 6 cut(s) 87, 553, 721, 769, 929, 1169
NlaIV GGNNCC 3 cut(s) 39, 412, 796
NsiI ATGCAT 1 cut(s) 1167
NspI RCATGY 1 cut(s) 769
NspV TTCGAA 1 cut(s) 56
PagI TCATGA 1 cut(s) 717
PdmI GAANNNNTTC 1 cut(s) 673
PfeI GAWTC 4 cut(s) 58, 696, 863, 885
PkrI GCNGC 9 cut(s) 334, 433, 469, 628, 631, 794, 922, 1000, 1204
PshBI ATTAAT 1 cut(s) 1113
PsiI TTATAA 1 cut(s) 909
PspEI GGTNACC 1 cut(s) 826
PspN4I GGNNCC 3 cut(s) 39, 412, 796
PspPI GGNCC 2 cut(s) 37, 500
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 2 cut(s) 149, 377
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 88, 706
RsaNI GTAC 2 cut(s) 87, 705
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 4 cut(s) 1061, 1071, 1113, 1134
SatI GCNGC 9 cut(s) 333, 432, 468, 627, 630, 793, 921, 999, 1203
Sau3AI GATC 6 cut(s) 149, 282, 377, 648, 840, 945
Sau96I GGNCC 2 cut(s) 37, 500
SduI GDGCHC 1 cut(s) 741
SfcI CTRYAG 4 cut(s) 429, 435, 1008, 1086
SfuI TTCGAA 1 cut(s) 56
SinI GGWCC 2 cut(s) 37, 500
SmiMI CAYNNNNRTG 1 cut(s) 749
Sse9I AATT 7 cut(s) 226, 513, 657, 970, 1072, 1110, 1183
SsiI CCGC 7 cut(s) 41, 300, 467, 792, 921, 1029, 1138
SspI AATATT 1 cut(s) 400
SspMI CTAG 6 cut(s) 692, 770, 834, 960, 1193, 1199
StyI CCWWGG 2 cut(s) 593, 1147
TaaI ACNGT 4 cut(s) 251, 497, 683, 818
TaiI ACGT 2 cut(s) 196, 1174
TaqI TCGA 1 cut(s) 56
TaqII GACCGA 1 cut(s) 878
TasI AATT 7 cut(s) 226, 513, 657, 970, 1072, 1110, 1183
TatI WGTACW 1 cut(s) 86
TauI GCSGC 3 cut(s) 470, 795, 923
TfiI GAWTC 4 cut(s) 58, 696, 863, 885
Tru1I TTAA 4 cut(s) 1061, 1071, 1113, 1134
Tru9I TTAA 4 cut(s) 1061, 1071, 1113, 1134
TscAI CASTG 2 cut(s) 247, 811
TseI GCWGC 6 cut(s) 332, 431, 626, 629, 998, 1202
TspDTI ATGAA 6 cut(s) 96, 316, 706, 876, 888, 1182
TspGWI ACGGA 4 cut(s) 55, 405, 463, 566
TspRI CASTG 2 cut(s) 247, 811
VpaK11BI GGWCC 2 cut(s) 37, 500
VspI ATTAAT 1 cut(s) 1113
XagI CCTNNNNNAGG 1 cut(s) 1011
XbaI TCTAGA 1 cut(s) 1192
XceI RCATGY 1 cut(s) 769
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 6 cut(s) 692, 770, 834, 960, 1193, 1199
Zsp2I ATGCAT 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.