RLG00000002779

Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005369
Physical Location & Seq
Forward (+)
39604137 .. 39605230
1094 bp
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UTR
Exon/CDS
Intron
RLM00000002779

Sequence Viewer

Length: 687 bp
ATGATTAGTGATTACATAAACCAAGATTTTACCATGACTGCAATTTTAGAGAGACGTGAAAGCGAAAGCCTATGGGGTCGCTTTTTTAATTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCGGGTAGATATTGATGGTATTCGTGAACCTGTTTCAGGATCTTTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTCCAGTTTTACCCAATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCTTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTGGATCTACCTAATTGGTCAAGGAAGCTTTTCTGTTGTTGATAGTCAAGGTCGTGTAATTAATACGTGGACTGATATTACTAACAGCGCTAAACTTGGTATGCAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGAAGTTCCAGCTATCAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

229

Amino Acids

25.43

Weight (kDa)

4.77

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 39 - 181 2.2e-40 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AciI CCGC 2 cut(s) 162, 329
AclWI GGATC 3 cut(s) 139, 247, 518
AfeI AGCGCT 1 cut(s) 595
AfiI CCNNNNNNNGG 2 cut(s) 236, 322
AgsI TTSAA 1 cut(s) 665
AjiI CACGTC 1 cut(s) 56
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 8 cut(s) 296, 373, 404, 479, 491, 534, 656, 674
AluI AGCT 8 cut(s) 296, 373, 404, 479, 491, 534, 656, 674
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 3 cut(s) 139, 247, 518
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 201
Aor51HI AGCGCT 1 cut(s) 595
ApeKI GCWGC 5 cut(s) 194, 293, 488, 491, 656
AseI ATTAAT 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 2 cut(s) 453, 596
AvaI CYCGRG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 272
BbvI GCAGC 5 cut(s) 181, 305, 478, 500, 643
BccI CCATC 2 cut(s) 120, 209
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 3 cut(s) 99, 647, 653
BfmI CTRYAG 2 cut(s) 291, 297
BfoI RGCGCY 1 cut(s) 597
BisI GCNGC 6 cut(s) 195, 294, 330, 489, 492, 657
BlsI GCNGC 6 cut(s) 196, 295, 331, 490, 493, 658
BmeT110I CYCGRG 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 200, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 322
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 200, 455
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 2 cut(s) 236, 322
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 5 cut(s) 181, 305, 478, 500, 643
BsgI GTGCAG 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 236, 322
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 201
Bsp143I GATC 3 cut(s) 144, 239, 510
BspACI CCGC 2 cut(s) 162, 329
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 3 cut(s) 139, 247, 518
BspT107I GGYRCC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 200, 455
BssMI GATC 3 cut(s) 144, 239, 510
BssT1I CCWWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 113, 359
BstAPI GCANNNNNTGC 1 cut(s) 616
BstBAI YACGTR 1 cut(s) 573
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 431
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 2 cut(s) 453, 596
BstKTI GATC 3 cut(s) 147, 242, 513
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 144, 239, 510
BstMWI GCNNNNNNNGC 5 cut(s) 191, 476, 485, 497, 616
BstSFI CTRYAG 2 cut(s) 291, 297
BstV1I GCAGC 5 cut(s) 181, 305, 478, 500, 643
BstX2I RGATCY 2 cut(s) 239, 510
BstYI RGATCY 2 cut(s) 239, 510
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 406
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 2 cut(s) 453, 596
CviAII CATG 2 cut(s) 34, 620
DdeI CTNAG 1 cut(s) 431
DpnI GATC 3 cut(s) 146, 241, 512
DpnII GATC 3 cut(s) 144, 239, 510
Eco130I CCWWGG 1 cut(s) 455
Eco47III AGCGCT 1 cut(s) 595
Eco88I CYCGRG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 455
EcoT22I ATGCAT 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 455
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 2 cut(s) 37, 623
FatI CATG 2 cut(s) 33, 619
Fnu4HI GCNGC 6 cut(s) 195, 294, 330, 489, 492, 657
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 6 cut(s) 195, 294, 330, 489, 492, 657
FspBI CTAG 3 cut(s) 99, 647, 653
GlaI GCGC 2 cut(s) 452, 595
GluI GCNGC 6 cut(s) 195, 294, 330, 489, 492, 657
HaeII RGCGCY 1 cut(s) 597
HhaI GCGC 2 cut(s) 453, 596
Hin1II CATG 2 cut(s) 37, 623
Hin6I GCGC 2 cut(s) 451, 594
HinP1I GCGC 2 cut(s) 451, 594
HindIII AAGCTT 1 cut(s) 532
Hpy166II GTNNAC 2 cut(s) 227, 576
Hpy188III TCNNGA 5 cut(s) 224, 237, 419, 508, 647
Hpy8I GTNNAC 2 cut(s) 227, 576
HpyCH4III ACNGT 2 cut(s) 113, 359
HpyCH4IV ACGT 3 cut(s) 55, 572, 625
HpyCH4V TGCA 7 cut(s) 41, 197, 293, 470, 488, 610, 619
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 476, 485, 497, 616
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 3 cut(s) 55, 572, 625
Hsp92II CATG 2 cut(s) 37, 623
HspAI GCGC 2 cut(s) 451, 594
Kzo9I GATC 3 cut(s) 144, 239, 510
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 6 cut(s) 222, 243, 255, 320, 493, 495
Lsp1109I GCAGC 5 cut(s) 181, 305, 478, 500, 643
MaeI CTAG 3 cut(s) 99, 647, 653
MaeII ACGT 3 cut(s) 55, 572, 625
MalI GATC 3 cut(s) 146, 241, 512
MboI GATC 3 cut(s) 144, 239, 510
MflI RGATCY 2 cut(s) 239, 510
MluCI AATT 6 cut(s) 42, 88, 375, 519, 564, 637
MnlI CCTC 2 cut(s) 210, 654
Mph1103I ATGCAT 1 cut(s) 621
MroXI GAANNNNTTC 1 cut(s) 535
MseI TTAA 2 cut(s) 87, 567
MspA1I CMGCKG 1 cut(s) 491
MwoI GCNNNNNNNGC 5 cut(s) 191, 476, 485, 497, 616
NdeII GATC 3 cut(s) 144, 239, 510
NlaIII CATG 2 cut(s) 37, 623
NlaIV GGNNCC 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 535
PkrI GCNGC 6 cut(s) 196, 295, 331, 490, 493, 658
Ppu21I YACGTR 1 cut(s) 573
PshBI ATTAAT 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 2 cut(s) 239, 510
PvuII CAGCTG 1 cut(s) 491
SaqAI TTAA 2 cut(s) 87, 567
SatI GCNGC 6 cut(s) 195, 294, 330, 489, 492, 657
Sau3AI GATC 3 cut(s) 144, 239, 510
SfcI CTRYAG 2 cut(s) 291, 297
Sse9I AATT 6 cut(s) 42, 88, 375, 519, 564, 637
SsiI CCGC 2 cut(s) 162, 329
SspI AATATT 1 cut(s) 262
SspMI CTAG 3 cut(s) 99, 647, 653
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 2 cut(s) 113, 359
TaiI ACGT 3 cut(s) 58, 575, 628
TasI AATT 6 cut(s) 42, 88, 375, 519, 564, 637
TauI GCSGC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 87, 567
Tru9I TTAA 2 cut(s) 87, 567
TscAI CASTG 1 cut(s) 109
TseI GCWGC 5 cut(s) 194, 293, 488, 491, 656
TspDTI ATGAA 3 cut(s) 178, 357, 636
TspGWI ACGGA 3 cut(s) 267, 325, 428
TspRI CASTG 1 cut(s) 109
VspI ATTAAT 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 234
XbaI TCTAGA 1 cut(s) 646
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 3 cut(s) 99, 647, 653
Zsp2I ATGCAT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.