Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005369

Physical Location & Seq

Genomic Coordinates Reverse (-)

23278402 .. 23279493

Gene Structure 1092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG125200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGACTGCAATTTTCGAGAGACGTGAAAGCGAAAGCCTATGGGGTCGCTTTTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCCTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGATTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGAAGTTCCATCTATCAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Photo_RC

Protein Analysis

363

Amino Acids

40.08

Weight (kDa)

5.12

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Photo_RC	PF00124	28 - 164	4.2e-41	Photosynthetic reaction centre protein
Photo_RC	PF00124	166 - 337	1.8e-48	Photosynthetic reaction centre protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00020
rosa_chinensis	RchiOBHm_Chr1g0354591 RchiOBHm_Chr4g0432801 RchiOBHm_Chr7g0221101 RchiOBHm_CPg0502541
rosa_laevigata	RLG00000000009 RLG00000000033 RLG00000000034 RLG00000000052 RLG00000000092 RLG00000000170 RLG00000000237 RLG00000000252 RLG00000000308 RLG00000002779 RLG00000029143 RLG00000029290
rosa_multiflora	Rmu_sc0003316.1_g000010 Rmu_sc0017755.1_g000007 Rmu_sc0017755.1_g000008
rosa_roxburghii	Rroxscaffold_2G00119130 Rroxscaffold_7G00179730
rosa_rugosa	RorugMtG0001300
rosa_samantha	Rh1AG125200 Rh1AG254400 Rh1CG119100 Rh4AG317100 Rh4DG320500
rosa_wichuraiana	Rw6G019460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	782
AccII	CGCG	1 cut(s)	999
AciI	CCGC	6 cut(s)	129, 296, 651, 780, 888, 997
AclWI	GGATC	2 cut(s)	106, 214
AcoI	YGGCCR	1 cut(s)	796
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	4 cut(s)	203, 289, 872, 1012
AgsI	TTSAA	5 cut(s)	571, 826, 916, 937, 1070
AjiI	CACGTC	1 cut(s)	23
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	9 cut(s)	263, 340, 371, 446, 458, 531, 593, 857, 1061
AluI	AGCT	9 cut(s)	263, 340, 371, 446, 458, 531, 593, 857, 1061
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	106, 214
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	796, 863
ApeKI	GCWGC	6 cut(s)	161, 260, 455, 458, 857, 1061
AseI	ATTAAT	1 cut(s)	972
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	2 cut(s)	420, 1001
AspS9I	GGNCC	2 cut(s)	329, 491
AsuHPI	GGTGA	1 cut(s)	877
AvaII	GGWCC	2 cut(s)	329, 491
BanI	GGYRCC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	6 cut(s)	148, 272, 445, 467, 844, 1048
BccI	CCATC	3 cut(s)	87, 176, 1084
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	6 cut(s)	551, 629, 693, 819, 1052, 1058
BfmI	CTRYAG	4 cut(s)	258, 264, 867, 945
BisI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 652, 780, 858, 1062
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	9 cut(s)	163, 262, 298, 457, 460, 653, 781, 859, 1063
Bme18I	GGWCC	2 cut(s)	329, 491
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	329, 491
BmiI	GGNNCC	2 cut(s)	241, 655
Bpu1102I	GCTNAGC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	422, 1006
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 289, 872, 1012
Bse3DI	GCAATG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	422, 1006
BseGI	GGATG	2 cut(s)	98, 603
BseLI	CCNNNNNNNGG	4 cut(s)	203, 289, 872, 1012
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	585
BseXI	GCAGC	6 cut(s)	148, 272, 445, 467, 844, 1048
BsgI	GTGCAG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	999
BshFI	GGCC	2 cut(s)	798, 865
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	203, 289, 872, 1012
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	798, 865
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	6 cut(s)	129, 296, 651, 780, 888, 997
BspANI	GGCC	2 cut(s)	798, 865
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	241, 655
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	2 cut(s)	106, 214
BspT107I	GGYRCC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	422, 1006
BssMI	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
BssT1I	CCWWGG	2 cut(s)	422, 1006
Bst4CI	ACNGT	3 cut(s)	80, 326, 542
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	398, 594, 853
BstEII	GGTNACC	1 cut(s)	685
BstENI	CCTNNNNNAGG	1 cut(s)	870
BstF5I	GGATG	2 cut(s)	98, 603
BstFNI	CGCG	1 cut(s)	999
BstHHI	GCGC	2 cut(s)	420, 1001
BstKTI	GATC	6 cut(s)	114, 209, 480, 510, 702, 807
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 443, 452, 464
BstNSI	RCATGY	1 cut(s)	628
BstPI	GGTNACC	1 cut(s)	685
BstSFI	CTRYAG	4 cut(s)	258, 264, 867, 945
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	6 cut(s)	148, 272, 445, 467, 844, 1048
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	798, 865
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	98, 603
BtsIMutI	CAGTG	2 cut(s)	69, 670
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	576
CfoI	GCGC	2 cut(s)	420, 1001
Cfr13I	GGNCC	2 cut(s)	329, 491
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	6 cut(s)	379, 577, 625, 674, 785, 1025
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	3 cut(s)	398, 594, 853
DpnI	GATC	6 cut(s)	113, 208, 479, 509, 701, 806
DpnII	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
EaeI	YGGCCR	1 cut(s)	796
Eco130I	CCWWGG	2 cut(s)	422, 1006
Eco47I	GGWCC	2 cut(s)	329, 491
Eco91I	GGTNACC	1 cut(s)	685
EcoNI	CCTNNNNNAGG	1 cut(s)	870
EcoO65I	GGTNACC	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	422, 1006
EcoT22I	ATGCAT	2 cut(s)	675, 1026
ErhI	CCWWGG	2 cut(s)	422, 1006
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	6 cut(s)	382, 580, 628, 677, 788, 1028
FatI	CATG	6 cut(s)	378, 576, 624, 673, 784, 1024
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 652, 780, 858, 1062
FokI	GGATG	2 cut(s)	105, 590
Fsp4HI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 652, 780, 858, 1062
FspBI	CTAG	6 cut(s)	551, 629, 693, 819, 1052, 1058
GlaI	GCGC	2 cut(s)	419, 1000
GluI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 652, 780, 858, 1062
HaeIII	GGCC	2 cut(s)	798, 865
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	2 cut(s)	420, 1001
Hin1II	CATG	6 cut(s)	382, 580, 628, 677, 788, 1028
Hin6I	GCGC	2 cut(s)	418, 999
HinP1I	GCGC	2 cut(s)	418, 999
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	3 cut(s)	555, 722, 744
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	2 cut(s)	194, 885
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	9 cut(s)	16, 191, 204, 386, 475, 505, 577, 752, 1052
Hpy8I	GTNNAC	2 cut(s)	194, 885
HpyAV	CCTTC	1 cut(s)	728
HpyCH4III	ACNGT	3 cut(s)	80, 326, 542
HpyCH4IV	ACGT	2 cut(s)	22, 1030
HpyCH4V	TGCA	9 cut(s)	8, 164, 260, 274, 437, 455, 613, 673, 1024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 443, 452, 464
HpyF3I	CTNAG	3 cut(s)	398, 594, 853
HpySE526I	ACGT	2 cut(s)	22, 1030
Hsp92II	CATG	6 cut(s)	382, 580, 628, 677, 788, 1028
HspAI	GCGC	2 cut(s)	418, 999
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
LmnI	GCTCC	2 cut(s)	451, 659
Lsp1109I	GCAGC	6 cut(s)	148, 272, 445, 467, 844, 1048
MaeI	CTAG	6 cut(s)	551, 629, 693, 819, 1052, 1058
MaeII	ACGT	2 cut(s)	22, 1030
MaeIII	GTNAC	2 cut(s)	685, 737
MalI	GATC	6 cut(s)	113, 208, 479, 509, 701, 806
MbiI	CCGCTC	1 cut(s)	782
MboI	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
MboII	GAAGA	3 cut(s)	770, 799, 841
MfeI	CAATTG	2 cut(s)	486, 516
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	9 cut(s)	9, 55, 342, 486, 516, 829, 931, 969, 1042
MnlI	CCTC	5 cut(s)	177, 558, 700, 748, 1059
Mph1103I	ATGCAT	2 cut(s)	675, 1026
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	4 cut(s)	920, 930, 972, 993
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	170
MunI	CAATTG	2 cut(s)	486, 516
MvnI	CGCG	1 cut(s)	999
MwoI	GCNNNNNNNGC	4 cut(s)	158, 443, 452, 464
NdeII	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
NlaIII	CATG	6 cut(s)	382, 580, 628, 677, 788, 1028
NlaIV	GGNNCC	2 cut(s)	241, 655
NsiI	ATGCAT	2 cut(s)	675, 1026
NspI	RCATGY	1 cut(s)	628
PagI	TCATGA	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	555, 722, 744
PkrI	GCNGC	9 cut(s)	163, 262, 298, 457, 460, 653, 781, 859, 1063
PshBI	ATTAAT	1 cut(s)	972
PsiI	TTATAA	1 cut(s)	768
PspEI	GGTNACC	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	241, 655
PspPI	GGNCC	2 cut(s)	329, 491
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	4 cut(s)	920, 930, 972, 993
SatI	GCNGC	9 cut(s)	162, 261, 297, 456, 459, 652, 780, 858, 1062
Sau3AI	GATC	6 cut(s)	111, 206, 477, 507, 699, 804
Sau96I	GGNCC	2 cut(s)	329, 491
SduI	GDGCHC	1 cut(s)	600
SfcI	CTRYAG	4 cut(s)	258, 264, 867, 945
SinI	GGWCC	2 cut(s)	329, 491
SmiMI	CAYNNNNRTG	1 cut(s)	608
Sse9I	AATT	9 cut(s)	9, 55, 342, 486, 516, 829, 931, 969, 1042
SsiI	CCGC	6 cut(s)	129, 296, 651, 780, 888, 997
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	6 cut(s)	551, 629, 693, 819, 1052, 1058
StyI	CCWWGG	2 cut(s)	422, 1006
TaaI	ACNGT	3 cut(s)	80, 326, 542
TaiI	ACGT	2 cut(s)	25, 1033
TaqI	TCGA	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	9 cut(s)	9, 55, 342, 486, 516, 829, 931, 969, 1042
TauI	GCSGC	3 cut(s)	299, 654, 782
TfiI	GAWTC	3 cut(s)	555, 722, 744
Tru1I	TTAA	4 cut(s)	920, 930, 972, 993
Tru9I	TTAA	4 cut(s)	920, 930, 972, 993
TscAI	CASTG	2 cut(s)	76, 670
TseI	GCWGC	6 cut(s)	161, 260, 455, 458, 857, 1061
TspDTI	ATGAA	6 cut(s)	145, 324, 565, 735, 747, 1041
TspGWI	ACGGA	3 cut(s)	234, 292, 395
TspRI	CASTG	2 cut(s)	76, 670
VpaK11BI	GGWCC	2 cut(s)	329, 491
VspI	ATTAAT	1 cut(s)	972
XagI	CCTNNNNNAGG	1 cut(s)	870
XbaI	TCTAGA	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	6 cut(s)	551, 629, 693, 819, 1052, 1058
Zsp2I	ATGCAT	2 cut(s)	675, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.