RchiOBHm_Chr7g0221101

Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005369
Physical Location & Seq
Reverse (-)
42038925 .. 42039197
273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19787

Sequence Viewer

Length: 273 bp
ATGTGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGTTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCACTAGTTTGATCAGGGAAACCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Photo_RC

Protein Analysis

90

Amino Acids

9.55

Weight (kDa)

5.97

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 1 - 88 2.9e-36 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AfaI GTAC 1 cut(s) 121
AgsI TTSAA 1 cut(s) 127
AhlI ACTAGT 1 cut(s) 248
AluBI AGCT 4 cut(s) 32, 44, 87, 149
AluI AGCT 4 cut(s) 32, 44, 87, 149
Alw21I GWGCWC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 41, 44
Asp700I GAANNNNTTC 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 31, 53
BclI TGATCA 1 cut(s) 255
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 3 cut(s) 107, 185, 249
BisI GCNGC 3 cut(s) 42, 45, 208
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 43, 46, 209
BmiI GGNNCC 1 cut(s) 211
Bpu1102I GCTNAGC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 31, 53
BsiHKAI GWGCWC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 8, 156
Bsp143I GATC 2 cut(s) 63, 255
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 2 cut(s) 63, 255
BssT1I CCWWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 52, 98
BstDEI CTNAG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 2 cut(s) 66, 258
BstMBI GATC 2 cut(s) 63, 255
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNSI RCATGY 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 31, 53
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 35
CciI TCATGA 1 cut(s) 132
Csp6I GTAC 1 cut(s) 120
CviAII CATG 3 cut(s) 133, 181, 230
CviJI RGCY 6 cut(s) 32, 44, 87, 149, 194, 210
CviKI_1 RGCY 6 cut(s) 32, 44, 87, 149, 194, 210
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 65, 257
DpnII GATC 2 cut(s) 63, 255
Eco130I CCWWGG 1 cut(s) 8
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 3 cut(s) 136, 184, 233
FaiI YATR 8 cut(s) 25, 101, 134, 167, 182, 227, 231, 271
FatI CATG 3 cut(s) 132, 180, 229
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 42, 45, 208
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 42, 45, 208
FspBI CTAG 3 cut(s) 107, 185, 249
GluI GCNGC 3 cut(s) 42, 45, 208
Hin1II CATG 3 cut(s) 136, 184, 233
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 61, 133
HpyCH4III ACNGT 2 cut(s) 52, 98
HpyCH4V TGCA 4 cut(s) 23, 41, 169, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 3 cut(s) 136, 184, 233
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 2 cut(s) 63, 255
LmnI GCTCC 2 cut(s) 37, 215
LpnPI CCDG 4 cut(s) 48, 102, 180, 244
Lsp1109I GCAGC 2 cut(s) 31, 53
MaeI CTAG 3 cut(s) 107, 185, 249
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 65, 257
MboI GATC 2 cut(s) 63, 255
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 8, 156
MluCI AATT 1 cut(s) 72
MnlI CCTC 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 88
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 44
MunI CAATTG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NdeII GATC 2 cut(s) 63, 255
NlaIII CATG 3 cut(s) 136, 184, 233
NlaIV GGNNCC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 1 cut(s) 184
PagI TCATGA 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 3 cut(s) 43, 46, 209
PspEI GGTNACC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 3 cut(s) 42, 45, 208
Sau3AI GATC 2 cut(s) 63, 255
SduI GDGCHC 2 cut(s) 8, 156
SetI ASST 5 cut(s) 34, 46, 89, 151, 190
SmiMI CAYNNNNRTG 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 207
SspMI CTAG 3 cut(s) 107, 185, 249
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 2 cut(s) 52, 98
TasI AATT 1 cut(s) 72
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 1 cut(s) 226
TseI GCWGC 2 cut(s) 41, 44
TspDTI ATGAA 1 cut(s) 121
TspRI CASTG 1 cut(s) 226
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 3 cut(s) 107, 185, 249
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.