DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00170 |
| malus_domestica | MD01G1014400.v1.1 |
| pyrus_communis | pycom12397g00020 pycom12397g00340 |
| rosa_chinensis | RchiOBHm_Chr4g0421201 |
| rosa_laevigata | RLG00000000048 RLG00000000088 RLG00000000117 RLG00000000174 RLG00000000232 RLG00000000233 RLG00000000247 RLG00000000283 RLG00000000313 RLG00000000317 RLG00000000339 |
| rosa_multiflora | Rmu_sc0001741.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00119090 Rroxscaffold_2G00119100 |
| rosa_rugosa | RorugMtG0001800 |
| rosa_samantha | Rh2AG294100 Rh2AG294200 Rh2DG057700 Rh2DG318000 Rh2DG318100 Rh4CG233400 Rh4CG244200 Rh7BG354800 Rh7CG382200 |
| rosa_wichuraiana | Rw4G006960 Rw4G006970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1074, 1662, 2979 |
| AccBSI | CCGCTC | 1 cut(s) | 3453 |
| AccI | GTMKAC | 1 cut(s) | 613 |
| AccII | CGCG | 4 cut(s) | 510, 610, 971, 1278 |
| AccIII | TCCGGA | 3 cut(s) | 1439, 1877, 2182 |
| AclI | AACGTT | 1 cut(s) | 3099 |
| AdeI | CACNNNGTG | 1 cut(s) | 2863 |
| AflIII | ACRYGT | 4 cut(s) | 608, 1057, 1115, 1121 |
| AhlI | ACTAGT | 1 cut(s) | 1652 |
| AjiI | CACGTC | 1 cut(s) | 1124 |
| AjnI | CCWGG | 3 cut(s) | 2230, 3618, 3718 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3312, 3344 |
| AluBI | AGCT | 6 cut(s) | 407, 956, 2933, 3224, 3884, 4040 |
| AluI | AGCT | 6 cut(s) | 407, 956, 2933, 3224, 3884, 4040 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 596 |
| Ama87I | CYCGRG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| Aor13HI | TCCGGA | 3 cut(s) | 1439, 1877, 2182 |
| AoxI | GGCC | 4 cut(s) | 12, 2333, 2917, 3916 |
| ApaI | GGGCCC | 1 cut(s) | 2921 |
| ApeKI | GCWGC | 1 cut(s) | 3884 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3186, 3218 |
| AseI | ATTAAT | 4 cut(s) | 77, 455, 737, 830 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 627, 1769, 1873, 3113 |
| AspS9I | GGNCC | 8 cut(s) | 12, 367, 2334, 2548, 2834, 2917, 2918, 3960 |
| AsuC2I | CCSGG | 3 cut(s) | 993, 3318, 3958 |
| AsuHPI | GGTGA | 4 cut(s) | 694, 944, 3416, 3958 |
| AsuII | TTCGAA | 3 cut(s) | 793, 862, 2500 |
| AvaI | CYCGRG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| AvaII | GGWCC | 4 cut(s) | 367, 2548, 2834, 3960 |
| AxyI | CCTNAGG | 2 cut(s) | 2007, 2923 |
| BaeGI | GKGCMC | 1 cut(s) | 2921 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 564, 597, 2044, 2077, 3357, 3390 |
| BamHI | GGATCC | 1 cut(s) | 463 |
| BanII | GRGCYC | 3 cut(s) | 556, 1069, 2921 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1173, 1205 |
| BbsI | GAAGAC | 1 cut(s) | 3413 |
| BbvI | GCAGC | 1 cut(s) | 3871 |
| BccI | CCATC | 3 cut(s) | 38, 88, 264 |
| BceAI | ACGGC | 2 cut(s) | 3776, 4010 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2018, 2052 |
| BciT130I | CCWGG | 3 cut(s) | 2232, 3620, 3720 |
| BciVI | GTATCC | 2 cut(s) | 2068, 3358 |
| BclI | TGATCA | 2 cut(s) | 1237, 1558 |
| BcnI | CCSGG | 3 cut(s) | 993, 3318, 3958 |
| BcuI | ACTAGT | 1 cut(s) | 1652 |
| BfaI | CTAG | 8 cut(s) | 116, 408, 1458, 1539, 1653, 1857, 3938, 4122 |
| BfmI | CTRYAG | 4 cut(s) | 957, 2056, 2676, 3564 |
| BfuI | GTATCC | 2 cut(s) | 2068, 3358 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2109 |
| BglII | AGATCT | 3 cut(s) | 802, 2392, 2985 |
| BisI | GCNGC | 2 cut(s) | 2333, 3885 |
| BlpI | GCTNAGC | 1 cut(s) | 3297 |
| BlsI | GCNGC | 2 cut(s) | 2334, 3886 |
| BmcAI | AGTACT | 1 cut(s) | 1360 |
| Bme1390I | CCNGG | 6 cut(s) | 993, 2232, 3318, 3620, 3720, 3958 |
| Bme18I | GGWCC | 4 cut(s) | 367, 2548, 2834, 3960 |
| BmeT110I | CYCGRG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| BmgBI | CACGTC | 1 cut(s) | 1124 |
| BmgT120I | GGNCC | 8 cut(s) | 12, 367, 2334, 2548, 2834, 2917, 2918, 3960 |
| BmiI | GGNNCC | 8 cut(s) | 369, 465, 553, 775, 2835, 2919, 2920, 3961 |
| BmrFI | CCNGG | 6 cut(s) | 993, 2232, 3318, 3620, 3720, 3958 |
| BmsI | GCATC | 6 cut(s) | 211, 428, 583, 1141, 2226, 3824 |
| BpiI | GAAGAC | 1 cut(s) | 3413 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 910, 942 |
| BpmI | CTGGAG | 2 cut(s) | 1375, 3741 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3297 |
| Bpu14I | TTCGAA | 3 cut(s) | 793, 862, 2500 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| BpuMI | CCSGG | 3 cut(s) | 993, 3318, 3958 |
| Bsa29I | ATCGAT | 6 cut(s) | 826, 980, 1748, 3057, 3613, 3903 |
| BsaAI | YACGTR | 2 cut(s) | 647, 1118 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1491 |
| BsaJI | CCNNGG | 7 cut(s) | 469, 670, 992, 3415, 3533, 3618, 3619 |
| BsaWI | WCCGGW | 5 cut(s) | 1439, 1877, 2182, 3401, 3962 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3312, 3342 |
| Bse118I | RCCGGY | 1 cut(s) | 1025 |
| Bse1I | ACTGG | 2 cut(s) | 380, 1358 |
| Bse21I | CCTNAGG | 2 cut(s) | 2007, 2923 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1491 |
| BseAI | TCCGGA | 3 cut(s) | 1439, 1877, 2182 |
| BseBI | CCWGG | 3 cut(s) | 2232, 3620, 3720 |
| BseCI | ATCGAT | 6 cut(s) | 826, 980, 1748, 3057, 3613, 3903 |
| BseDI | CCNNGG | 7 cut(s) | 469, 670, 992, 3415, 3533, 3618, 3619 |
| BseGI | GGATG | 8 cut(s) | 99, 111, 158, 366, 711, 1108, 1132, 1917 |
| BseJI | GATNNNNATC | 1 cut(s) | 1491 |
| BseMII | CTCAG | 5 cut(s) | 1260, 1350, 1560, 1998, 3546 |
| BseNI | ACTGG | 2 cut(s) | 380, 1358 |
| BseRI | GAGGAG | 2 cut(s) | 1962, 2558 |
| BseSI | GKGCMC | 1 cut(s) | 2921 |
| BseXI | GCAGC | 1 cut(s) | 3871 |
| BsgI | GTGCAG | 1 cut(s) | 3647 |
| Bsh1236I | CGCG | 4 cut(s) | 510, 610, 971, 1278 |
| Bsh1285I | CGRYCG | 1 cut(s) | 984 |
| BshFI | GGCC | 4 cut(s) | 14, 2335, 2919, 3918 |
| BshVI | ATCGAT | 6 cut(s) | 826, 980, 1748, 3057, 3613, 3903 |
| BsiEI | CGRYCG | 1 cut(s) | 984 |
| BsiHKCI | CYCGRG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| BsiSI | CCGG | 9 cut(s) | 992, 1026, 1440, 1878, 2183, 3317, 3402, 3957, 3963 |
| BslFI | GGGAC | 7 cut(s) | 906, 1009, 1354, 1909, 2537, 2773, 3973 |
| BsmFI | GGGAC | 7 cut(s) | 906, 1009, 1354, 1909, 2537, 2773, 3973 |
| BsmI | GAATGC | 1 cut(s) | 2721 |
| BsnI | GGCC | 4 cut(s) | 14, 2335, 2919, 3918 |
| BsoBI | CYCGRG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| Bsp119I | TTCGAA | 3 cut(s) | 793, 862, 2500 |
| Bsp120I | GGGCCC | 1 cut(s) | 2917 |
| Bsp1286I | GDGCHC | 3 cut(s) | 556, 1069, 2921 |
| Bsp13I | TCCGGA | 3 cut(s) | 1439, 1877, 2182 |
| Bsp1407I | TGTACA | 1 cut(s) | 271 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3297 |
| Bsp68I | TCGCGA | 1 cut(s) | 1278 |
| BspANI | GGCC | 4 cut(s) | 14, 2335, 2919, 3918 |
| BspCNI | CTCAG | 5 cut(s) | 1261, 1349, 1559, 1999, 3547 |
| BspDI | ATCGAT | 6 cut(s) | 826, 980, 1748, 3057, 3613, 3903 |
| BspEI | TCCGGA | 3 cut(s) | 1439, 1877, 2182 |
| BspFNI | CGCG | 4 cut(s) | 510, 610, 971, 1278 |
| BspHI | TCATGA | 1 cut(s) | 1687 |
| BspLI | GGNNCC | 8 cut(s) | 369, 465, 553, 775, 2835, 2919, 2920, 3961 |
| BspMAI | CTGCAG | 1 cut(s) | 2680 |
| BspQI | GCTCTTC | 1 cut(s) | 3894 |
| BspT104I | TTCGAA | 3 cut(s) | 793, 862, 2500 |
| BsrBI | CCGCTC | 1 cut(s) | 3453 |
| BsrFI | RCCGGY | 1 cut(s) | 1025 |
| BsrGI | TGTACA | 1 cut(s) | 271 |
| BsrI | ACTGG | 2 cut(s) | 380, 1358 |
| BssAI | RCCGGY | 1 cut(s) | 1025 |
| BssECI | CCNNGG | 7 cut(s) | 469, 670, 992, 3415, 3533, 3618, 3619 |
| BssT1I | CCWWGG | 3 cut(s) | 469, 3415, 3533 |
| Bst2UI | CCWGG | 3 cut(s) | 2232, 3620, 3720 |
| Bst4CI | ACNGT | 3 cut(s) | 519, 2213, 2363 |
| Bst6I | CTCTTC | 5 cut(s) | 2230, 2387, 3687, 3894, 4102 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3884 |
| BstAUI | TGTACA | 1 cut(s) | 271 |
| BstBAI | YACGTR | 2 cut(s) | 647, 1118 |
| BstBI | TTCGAA | 3 cut(s) | 793, 862, 2500 |
| BstC8I | GCNNGC | 3 cut(s) | 147, 209, 3762 |
| BstEII | GGTNACC | 1 cut(s) | 932 |
| BstF5I | GGATG | 8 cut(s) | 99, 111, 158, 366, 711, 1108, 1132, 1917 |
| BstFNI | CGCG | 4 cut(s) | 510, 610, 971, 1278 |
| BstMCI | CGRYCG | 1 cut(s) | 984 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 11, 507, 2109, 3884 |
| BstNI | CCWGG | 3 cut(s) | 2232, 3620, 3720 |
| BstNSI | RCATGY | 3 cut(s) | 278, 1061, 2767 |
| BstPI | GGTNACC | 1 cut(s) | 932 |
| BstSCI | CCNGG | 6 cut(s) | 991, 2230, 3316, 3618, 3718, 3956 |
| BstSFI | CTRYAG | 4 cut(s) | 957, 2056, 2676, 3564 |
| BstSLI | GKGCMC | 1 cut(s) | 2921 |
| BstSNI | TACGTA | 1 cut(s) | 647 |
| BstUI | CGCG | 4 cut(s) | 510, 610, 971, 1278 |
| BstV1I | GCAGC | 1 cut(s) | 3871 |
| BstV2I | GAAGAC | 1 cut(s) | 3413 |
| BstX2I | RGATCY | 8 cut(s) | 463, 802, 894, 1454, 2392, 2985, 3290, 3398 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 263 |
| BstYI | RGATCY | 8 cut(s) | 463, 802, 894, 1454, 2392, 2985, 3290, 3398 |
| Bsu15I | ATCGAT | 6 cut(s) | 826, 980, 1748, 3057, 3613, 3903 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2007, 2923 |
| BsuI | GTATCC | 2 cut(s) | 2068, 3358 |
| BsuRI | GGCC | 4 cut(s) | 14, 2335, 2919, 3918 |
| BsuTUI | ATCGAT | 6 cut(s) | 826, 980, 1748, 3057, 3613, 3903 |
| BtrI | CACGTC | 1 cut(s) | 1124 |
| BtsCI | GGATG | 8 cut(s) | 99, 111, 158, 366, 711, 1108, 1132, 1917 |
| BtsI | GCAGTG | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 4 cut(s) | 150, 1351, 1554, 2218 |
| BtuMI | TCGCGA | 1 cut(s) | 1278 |
| Cac8I | GCNNGC | 3 cut(s) | 147, 209, 3762 |
| CaiI | CAGNNNCTG | 1 cut(s) | 596 |
| CciI | TCATGA | 1 cut(s) | 1687 |
| Cfr10I | RCCGGY | 1 cut(s) | 1025 |
| Cfr13I | GGNCC | 8 cut(s) | 12, 367, 2334, 2548, 2834, 2917, 2918, 3960 |
| ClaI | ATCGAT | 6 cut(s) | 826, 980, 1748, 3057, 3613, 3903 |
| CseI | GACGC | 1 cut(s) | 599 |
| DraI | TTTAAA | 4 cut(s) | 1303, 2091, 2272, 3078 |
| DraIII | CACNNNGTG | 1 cut(s) | 2863 |
| Eam1104I | CTCTTC | 5 cut(s) | 2230, 2387, 3687, 3894, 4102 |
| EarI | CTCTTC | 5 cut(s) | 2230, 2387, 3687, 3894, 4102 |
| EciI | GGCGGA | 4 cut(s) | 20, 1044, 1507, 1922 |
| Eco105I | TACGTA | 1 cut(s) | 647 |
| Eco130I | CCWWGG | 3 cut(s) | 469, 3415, 3533 |
| Eco147I | AGGCCT | 1 cut(s) | 3918 |
| Eco24I | GRGCYC | 3 cut(s) | 556, 1069, 2921 |
| Eco32I | GATATC | 2 cut(s) | 602, 2173 |
| Eco47I | GGWCC | 4 cut(s) | 367, 2548, 2834, 3960 |
| Eco81I | CCTNAGG | 2 cut(s) | 2007, 2923 |
| Eco88I | CYCGRG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| Eco91I | GGTNACC | 1 cut(s) | 932 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2918 |
| EcoO65I | GGTNACC | 1 cut(s) | 932 |
| EcoRI | GAATTC | 4 cut(s) | 1769, 1881, 3519, 3528 |
| EcoRII | CCWGG | 3 cut(s) | 2230, 3618, 3718 |
| EcoRV | GATATC | 2 cut(s) | 602, 2173 |
| EcoT14I | CCWWGG | 3 cut(s) | 469, 3415, 3533 |
| EcoT22I | ATGCAT | 1 cut(s) | 421 |
| EcoT38I | GRGCYC | 3 cut(s) | 556, 1069, 2921 |
| ErhI | CCWWGG | 3 cut(s) | 469, 3415, 3533 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3873, 3905 |
| FaqI | GGGAC | 7 cut(s) | 906, 1009, 1354, 1909, 2537, 2773, 3973 |
| FauI | CCCGC | 3 cut(s) | 964, 2105, 3961 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| FbaI | TGATCA | 2 cut(s) | 1237, 1558 |
| FblI | GTMKAC | 1 cut(s) | 613 |
| Fnu4HI | GCNGC | 2 cut(s) | 2333, 3885 |
| FokI | GGATG | 8 cut(s) | 98, 106, 145, 373, 718, 1095, 1119, 1904 |
| FriOI | GRGCYC | 3 cut(s) | 556, 1069, 2921 |
| Fsp4HI | GCNGC | 2 cut(s) | 2333, 3885 |
| FspBI | CTAG | 8 cut(s) | 116, 408, 1458, 1539, 1653, 1857, 3938, 4122 |
| GluI | GCNGC | 2 cut(s) | 2333, 3885 |
| GsuI | CTGGAG | 2 cut(s) | 1375, 3741 |
| HaeIII | GGCC | 4 cut(s) | 14, 2335, 2919, 3918 |
| HapII | CCGG | 9 cut(s) | 992, 1026, 1440, 1878, 2183, 3317, 3402, 3957, 3963 |
| HgaI | GACGC | 1 cut(s) | 599 |
| HincII | GTYRAC | 2 cut(s) | 614, 3561 |
| HindII | GTYRAC | 2 cut(s) | 614, 3561 |
| HpaI | GTTAAC | 1 cut(s) | 3561 |
| HpaII | CCGG | 9 cut(s) | 992, 1026, 1440, 1878, 2183, 3317, 3402, 3957, 3963 |
| HphI | GGTGA | 4 cut(s) | 694, 944, 3416, 3958 |
| Hpy166II | GTNNAC | 6 cut(s) | 614, 1121, 1402, 3177, 3561, 3992 |
| Hpy8I | GTNNAC | 6 cut(s) | 614, 1121, 1402, 3177, 3561, 3992 |
| Hpy99I | CGWCG | 2 cut(s) | 615, 2917 |
| HpyAV | CCTTC | 5 cut(s) | 207, 382, 506, 2248, 3353 |
| HpyCH4III | ACNGT | 3 cut(s) | 519, 2213, 2363 |
| HpyCH4IV | ACGT | 6 cut(s) | 646, 1117, 1123, 3099, 3173, 3661 |
| HpyCH4V | TGCA | 8 cut(s) | 419, 1351, 1376, 2017, 2678, 3571, 3628, 3985 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 11, 507, 2109, 3884 |
| HpySE526I | ACGT | 6 cut(s) | 646, 1117, 1123, 3099, 3173, 3661 |
| Kpn2I | TCCGGA | 3 cut(s) | 1439, 1877, 2182 |
| Ksp22I | TGATCA | 2 cut(s) | 1237, 1558 |
| KspAI | GTTAAC | 1 cut(s) | 3561 |
| LguI | GCTCTTC | 1 cut(s) | 3894 |
| LmnI | GCTCC | 3 cut(s) | 404, 551, 3320 |
| Lsp1109I | GCAGC | 1 cut(s) | 3871 |
| LweI | GCATC | 6 cut(s) | 211, 428, 583, 1141, 2226, 3824 |
| MaeI | CTAG | 8 cut(s) | 116, 408, 1458, 1539, 1653, 1857, 3938, 4122 |
| MaeII | ACGT | 6 cut(s) | 646, 1117, 1123, 3099, 3173, 3661 |
| MaeIII | GTNAC | 6 cut(s) | 932, 1124, 1198, 3095, 3373, 4091 |
| MbiI | CCGCTC | 1 cut(s) | 3453 |
| MflI | RGATCY | 8 cut(s) | 463, 802, 894, 1454, 2392, 2985, 3290, 3398 |
| MhlI | GDGCHC | 3 cut(s) | 556, 1069, 2921 |
| MluI | ACGCGT | 1 cut(s) | 608 |
| MmeI | TCCRAC | 6 cut(s) | 218, 441, 860, 896, 2314, 3479 |
| Mph1103I | ATGCAT | 1 cut(s) | 421 |
| MroI | TCCGGA | 3 cut(s) | 1439, 1877, 2182 |
| MroXI | GAANNNNTTC | 4 cut(s) | 627, 1769, 1873, 3113 |
| MslI | CAYNNNNRTG | 3 cut(s) | 261, 2069, 2859 |
| MspI | CCGG | 9 cut(s) | 992, 1026, 1440, 1878, 2183, 3317, 3402, 3957, 3963 |
| MspR9I | CCNGG | 6 cut(s) | 993, 2232, 3318, 3620, 3720, 3958 |
| Mva1269I | GAATGC | 1 cut(s) | 2721 |
| MvaI | CCWGG | 3 cut(s) | 2232, 3620, 3720 |
| MvnI | CGCG | 4 cut(s) | 510, 610, 971, 1278 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 11, 507, 2109, 3884 |
| NciI | CCSGG | 3 cut(s) | 993, 3318, 3958 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NlaIV | GGNNCC | 8 cut(s) | 369, 465, 553, 775, 2835, 2919, 2920, 3961 |
| NmuCI | GTSAC | 4 cut(s) | 932, 1124, 1198, 4091 |
| NruI | TCGCGA | 1 cut(s) | 1278 |
| NsiI | ATGCAT | 1 cut(s) | 421 |
| NspI | RCATGY | 3 cut(s) | 278, 1061, 2767 |
| NspV | TTCGAA | 3 cut(s) | 793, 862, 2500 |
| PacI | TTAATTAA | 1 cut(s) | 2997 |
| PaeR7I | CTCGAG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| PagI | TCATGA | 1 cut(s) | 1687 |
| PasI | CCCWGGG | 1 cut(s) | 3619 |
| PceI | AGGCCT | 1 cut(s) | 3918 |
| PciI | ACATGT | 1 cut(s) | 1057 |
| PciSI | GCTCTTC | 1 cut(s) | 3894 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3748, 3757 |
| PctI | GAATGC | 1 cut(s) | 2721 |
| PdmI | GAANNNNTTC | 4 cut(s) | 627, 1769, 1873, 3113 |
| PfoI | TCCNGGA | 1 cut(s) | 3316 |
| PkrI | GCNGC | 2 cut(s) | 2334, 3886 |
| Ple19I | CGATCG | 1 cut(s) | 984 |
| Ppu21I | YACGTR | 2 cut(s) | 647, 1118 |
| PscI | ACATGT | 1 cut(s) | 1057 |
| PshBI | ATTAAT | 4 cut(s) | 77, 455, 737, 830 |
| PsiI | TTATAA | 3 cut(s) | 1074, 1662, 2979 |
| Psp1406I | AACGTT | 1 cut(s) | 3099 |
| Psp6I | CCWGG | 3 cut(s) | 2230, 3618, 3718 |
| PspEI | GGTNACC | 1 cut(s) | 932 |
| PspGI | CCWGG | 3 cut(s) | 2230, 3618, 3718 |
| PspN4I | GGNNCC | 8 cut(s) | 369, 465, 553, 775, 2835, 2919, 2920, 3961 |
| PspOMI | GGGCCC | 1 cut(s) | 2917 |
| PspPI | GGNCC | 8 cut(s) | 12, 367, 2334, 2548, 2834, 2917, 2918, 3960 |
| PspXI | VCTCGAGB | 3 cut(s) | 2466, 3810, 3867 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 856, 888, 1006, 1038 |
| PstI | CTGCAG | 1 cut(s) | 2680 |
| PstNI | CAGNNNCTG | 1 cut(s) | 596 |
| PsuI | RGATCY | 8 cut(s) | 463, 802, 894, 1454, 2392, 2985, 3290, 3398 |
| PvuI | CGATCG | 1 cut(s) | 984 |
| RruI | TCGCGA | 1 cut(s) | 1278 |
| RseI | CAYNNNNRTG | 3 cut(s) | 261, 2069, 2859 |
| SalI | GTCGAC | 1 cut(s) | 612 |
| SapI | GCTCTTC | 1 cut(s) | 3894 |
| SatI | GCNGC | 2 cut(s) | 2333, 3885 |
| Sau96I | GGNCC | 8 cut(s) | 12, 367, 2334, 2548, 2834, 2917, 2918, 3960 |
| ScaI | AGTACT | 1 cut(s) | 1360 |
| ScrFI | CCNGG | 6 cut(s) | 993, 2232, 3318, 3620, 3720, 3958 |
| SduI | GDGCHC | 3 cut(s) | 556, 1069, 2921 |
| SfaNI | GCATC | 6 cut(s) | 211, 428, 583, 1141, 2226, 3824 |
| SfcI | CTRYAG | 4 cut(s) | 957, 2056, 2676, 3564 |
| Sfr274I | CTCGAG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| SfuI | TTCGAA | 3 cut(s) | 793, 862, 2500 |
| SinI | GGWCC | 4 cut(s) | 367, 2548, 2834, 3960 |
| SlaI | CTCGAG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 261, 2069, 2859 |
| SmlI | CTYRAG | 5 cut(s) | 423, 2466, 2540, 3810, 3867 |
| SmoI | CTYRAG | 5 cut(s) | 423, 2466, 2540, 3810, 3867 |
| SnaBI | TACGTA | 1 cut(s) | 647 |
| SpeI | ACTAGT | 1 cut(s) | 1652 |
| SseBI | AGGCCT | 1 cut(s) | 3918 |
| SspI | AATATT | 4 cut(s) | 329, 2160, 2416, 3002 |
| SspMI | CTAG | 8 cut(s) | 116, 408, 1458, 1539, 1653, 1857, 3938, 4122 |
| StuI | AGGCCT | 1 cut(s) | 3918 |
| StyD4I | CCNGG | 6 cut(s) | 991, 2230, 3316, 3618, 3718, 3956 |
| StyI | CCWWGG | 3 cut(s) | 469, 3415, 3533 |
| TaaI | ACNGT | 3 cut(s) | 519, 2213, 2363 |
| TaiI | ACGT | 6 cut(s) | 649, 1120, 1126, 3102, 3176, 3664 |
| TatI | WGTACW | 5 cut(s) | 271, 427, 884, 1358, 2573 |
| TauI | GCSGC | 1 cut(s) | 2335 |
| TscAI | CASTG | 4 cut(s) | 157, 1358, 1554, 2218 |
| TseFI | GTSAC | 4 cut(s) | 932, 1124, 1198, 4091 |
| TseI | GCWGC | 1 cut(s) | 3884 |
| Tsp45I | GTSAC | 4 cut(s) | 932, 1124, 1198, 4091 |
| TspGWI | ACGGA | 7 cut(s) | 380, 1811, 2308, 2540, 2682, 2766, 3081 |
| TspRI | CASTG | 4 cut(s) | 157, 1358, 1554, 2218 |
| VpaK11BI | GGWCC | 4 cut(s) | 367, 2548, 2834, 3960 |
| VspI | ATTAAT | 4 cut(s) | 77, 455, 737, 830 |
| XceI | RCATGY | 3 cut(s) | 278, 1061, 2767 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 737, 4012 |
| XhoI | CTCGAG | 4 cut(s) | 2466, 2540, 3810, 3867 |
| XmiI | GTMKAC | 1 cut(s) | 613 |
| XmnI | GAANNNNTTC | 4 cut(s) | 627, 1769, 1873, 3113 |
| XspI | CTAG | 8 cut(s) | 116, 408, 1458, 1539, 1653, 1857, 3938, 4122 |
| ZrmI | AGTACT | 1 cut(s) | 1360 |
| Zsp2I | ATGCAT | 1 cut(s) | 421 |