DNA-directed RNA polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00170 |
| malus_domestica | MD01G1014400.v1.1 |
| pyrus_communis | pycom12397g00020 pycom12397g00340 |
| rosa_chinensis | RchiOBHm_Chr4g0421201 |
| rosa_laevigata | RLG00000000048 RLG00000000088 RLG00000000117 RLG00000000174 RLG00000000232 RLG00000000233 RLG00000000247 RLG00000000283 RLG00000000313 RLG00000000317 RLG00000000339 |
| rosa_multiflora | Rmu_sc0001741.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00119090 Rroxscaffold_2G00119100 |
| rosa_rugosa | RorugMtG0001800 |
| rosa_samantha | Rh2AG294100 Rh2AG294200 Rh2DG057700 Rh2DG318000 Rh2DG318100 Rh4CG233400 Rh4CG244200 Rh7BG354800 Rh7CG382200 |
| rosa_wichuraiana | Rw4G006960 Rw4G006970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 662 |
| AccII | CGCG | 4 cut(s) | 278, 772, 1272, 1274 |
| AciI | CCGC | 6 cut(s) | 51, 278, 556, 770, 965, 1274 |
| AclI | AACGTT | 1 cut(s) | 1497 |
| AclWI | GGATC | 5 cut(s) | 458, 471, 896, 1488, 1838 |
| AcoI | YGGCCR | 1 cut(s) | 907 |
| AcsI | RAATTY | 5 cut(s) | 714, 1082, 1376, 1568, 1949 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 203, 695, 923, 1070, 1802 |
| AflIII | ACRYGT | 3 cut(s) | 1051, 1109, 1115 |
| AgeI | ACCGGT | 1 cut(s) | 1019 |
| AjiI | CACGTC | 1 cut(s) | 1118 |
| AjnI | CCWGG | 1 cut(s) | 930 |
| AluBI | AGCT | 3 cut(s) | 407, 950, 1605 |
| AluI | AGCT | 3 cut(s) | 407, 950, 1605 |
| AlwI | GGATC | 5 cut(s) | 458, 471, 896, 1488, 1838 |
| Ama87I | CYCGRG | 1 cut(s) | 2018 |
| AoxI | GGCC | 2 cut(s) | 12, 907 |
| ApoI | RAATTY | 5 cut(s) | 714, 1082, 1376, 1568, 1949 |
| AseI | ATTAAT | 1 cut(s) | 77 |
| AsiGI | ACCGGT | 1 cut(s) | 1019 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 627, 1864 |
| AspLEI | GCGC | 2 cut(s) | 1274, 1372 |
| AspS9I | GGNCC | 4 cut(s) | 12, 367, 767, 2110 |
| AsuC2I | CCSGG | 1 cut(s) | 987 |
| AsuII | TTCGAA | 3 cut(s) | 787, 856, 1309 |
| AvaI | CYCGRG | 1 cut(s) | 2018 |
| AvaII | GGWCC | 3 cut(s) | 367, 767, 2110 |
| AxyI | CCTNAGG | 1 cut(s) | 1998 |
| BaeGI | GKGCMC | 1 cut(s) | 992 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 564, 597, 1336, 1369, 2035, 2068 |
| BamHI | GGATCC | 1 cut(s) | 463 |
| BanI | GGYRCC | 1 cut(s) | 662 |
| BanII | GRGCYC | 3 cut(s) | 556, 917, 1063 |
| BbsI | GAAGAC | 1 cut(s) | 2016 |
| BccI | CCATC | 2 cut(s) | 38, 264 |
| BceAI | ACGGC | 1 cut(s) | 767 |
| BciT130I | CCWGG | 1 cut(s) | 932 |
| BciVI | GTATCC | 1 cut(s) | 565 |
| BclI | TGATCA | 1 cut(s) | 1552 |
| BcnI | CCSGG | 1 cut(s) | 987 |
| BfaI | CTAG | 3 cut(s) | 116, 408, 1533 |
| BfmI | CTRYAG | 3 cut(s) | 951, 1044, 1890 |
| BfuI | GTATCC | 1 cut(s) | 565 |
| Bme1390I | CCNGG | 2 cut(s) | 932, 987 |
| Bme18I | GGWCC | 3 cut(s) | 367, 767, 2110 |
| BmeT110I | CYCGRG | 1 cut(s) | 2018 |
| BmgBI | CACGTC | 1 cut(s) | 1118 |
| BmgT120I | GGNCC | 4 cut(s) | 12, 367, 767, 2110 |
| BmiI | GGNNCC | 6 cut(s) | 49, 369, 465, 553, 664, 914 |
| BmrFI | CCNGG | 2 cut(s) | 932, 987 |
| BmsI | GCATC | 7 cut(s) | 211, 428, 583, 693, 764, 1135, 1755 |
| BpiI | GAAGAC | 1 cut(s) | 2016 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 904, 936 |
| BpmI | CTGGAG | 1 cut(s) | 1369 |
| Bpu14I | TTCGAA | 3 cut(s) | 787, 856, 1309 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| BpuMI | CCSGG | 1 cut(s) | 987 |
| Bsa29I | ATCGAT | 4 cut(s) | 42, 820, 1739, 1981 |
| BsaAI | YACGTR | 4 cut(s) | 509, 647, 1112, 1240 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1362, 1485 |
| BsaJI | CCNNGG | 2 cut(s) | 670, 1936 |
| BsaWI | WCCGGW | 1 cut(s) | 1019 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 203, 695, 923, 1070, 1802 |
| Bse118I | RCCGGY | 1 cut(s) | 1019 |
| Bse1I | ACTGG | 3 cut(s) | 15, 380, 1352 |
| Bse21I | CCTNAGG | 1 cut(s) | 1998 |
| Bse3DI | GCAATG | 1 cut(s) | 777 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1362, 1485 |
| BseBI | CCWGG | 1 cut(s) | 932 |
| BseCI | ATCGAT | 4 cut(s) | 42, 820, 1739, 1981 |
| BseDI | CCNNGG | 2 cut(s) | 670, 1936 |
| BseGI | GGATG | 8 cut(s) | 111, 158, 366, 598, 705, 1102, 1126, 1770 |
| BseJI | GATNNNNATC | 2 cut(s) | 1362, 1485 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 203, 695, 923, 1070, 1802 |
| BseMI | GCAATG | 1 cut(s) | 777 |
| BseMII | CTCAG | 3 cut(s) | 1254, 1344, 1989 |
| BseNI | ACTGG | 3 cut(s) | 15, 380, 1352 |
| BseRI | GAGGAG | 1 cut(s) | 1953 |
| BseSI | GKGCMC | 1 cut(s) | 992 |
| BsgI | GTGCAG | 2 cut(s) | 1465, 1476 |
| Bsh1236I | CGCG | 4 cut(s) | 278, 772, 1272, 1274 |
| BshFI | GGCC | 2 cut(s) | 14, 909 |
| BshNI | GGYRCC | 1 cut(s) | 662 |
| BshTI | ACCGGT | 1 cut(s) | 1019 |
| BshVI | ATCGAT | 4 cut(s) | 42, 820, 1739, 1981 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2018 |
| BsiSI | CCGG | 4 cut(s) | 707, 910, 986, 1020 |
| BslFI | GGGAC | 3 cut(s) | 1445, 1533, 1758 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 203, 695, 923, 1070, 1802 |
| BsmFI | GGGAC | 3 cut(s) | 1445, 1533, 1758 |
| BsmI | GAATGC | 1 cut(s) | 1900 |
| BsnI | GGCC | 2 cut(s) | 14, 909 |
| BsoBI | CYCGRG | 1 cut(s) | 2018 |
| Bsp119I | TTCGAA | 3 cut(s) | 787, 856, 1309 |
| Bsp1286I | GDGCHC | 4 cut(s) | 556, 917, 992, 1063 |
| Bsp1407I | TGTACA | 2 cut(s) | 271, 1393 |
| BspACI | CCGC | 6 cut(s) | 51, 278, 556, 770, 965, 1274 |
| BspANI | GGCC | 2 cut(s) | 14, 909 |
| BspCNI | CTCAG | 3 cut(s) | 1255, 1343, 1990 |
| BspDI | ATCGAT | 4 cut(s) | 42, 820, 1739, 1981 |
| BspFNI | CGCG | 4 cut(s) | 278, 772, 1272, 1274 |
| BspLI | GGNNCC | 6 cut(s) | 49, 369, 465, 553, 664, 914 |
| BspMAI | CTGCAG | 1 cut(s) | 1048 |
| BspPI | GGATC | 5 cut(s) | 458, 471, 896, 1488, 1838 |
| BspT104I | TTCGAA | 3 cut(s) | 787, 856, 1309 |
| BspT107I | GGYRCC | 1 cut(s) | 662 |
| BsrDI | GCAATG | 1 cut(s) | 777 |
| BsrFI | RCCGGY | 1 cut(s) | 1019 |
| BsrGI | TGTACA | 2 cut(s) | 271, 1393 |
| BsrI | ACTGG | 3 cut(s) | 15, 380, 1352 |
| BssAI | RCCGGY | 1 cut(s) | 1019 |
| BssECI | CCNNGG | 2 cut(s) | 670, 1936 |
| Bst2UI | CCWGG | 1 cut(s) | 932 |
| Bst4CI | ACNGT | 2 cut(s) | 667, 1891 |
| BstAUI | TGTACA | 2 cut(s) | 271, 1393 |
| BstBAI | YACGTR | 4 cut(s) | 509, 647, 1112, 1240 |
| BstBI | TTCGAA | 3 cut(s) | 787, 856, 1309 |
| BstC8I | GCNNGC | 1 cut(s) | 556 |
| BstDEI | CTNAG | 4 cut(s) | 201, 1263, 1330, 1998 |
| BstF5I | GGATG | 8 cut(s) | 111, 158, 366, 598, 705, 1102, 1126, 1770 |
| BstFNI | CGCG | 4 cut(s) | 278, 772, 1272, 1274 |
| BstHHI | GCGC | 2 cut(s) | 1274, 1372 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNI | CCWGG | 1 cut(s) | 932 |
| BstNSI | RCATGY | 1 cut(s) | 1055 |
| BstSCI | CCNGG | 2 cut(s) | 930, 985 |
| BstSFI | CTRYAG | 3 cut(s) | 951, 1044, 1890 |
| BstSLI | GKGCMC | 1 cut(s) | 992 |
| BstSNI | TACGTA | 2 cut(s) | 647, 1240 |
| BstUI | CGCG | 4 cut(s) | 278, 772, 1272, 1274 |
| BstV2I | GAAGAC | 1 cut(s) | 2016 |
| BstX2I | RGATCY | 2 cut(s) | 463, 888 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 263 |
| BstYI | RGATCY | 2 cut(s) | 463, 888 |
| Bsu15I | ATCGAT | 4 cut(s) | 42, 820, 1739, 1981 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1998 |
| BsuI | GTATCC | 1 cut(s) | 565 |
| BsuRI | GGCC | 2 cut(s) | 14, 909 |
| BsuTUI | ATCGAT | 4 cut(s) | 42, 820, 1739, 1981 |
| BtgZI | GCGATG | 1 cut(s) | 787 |
| BtrI | CACGTC | 1 cut(s) | 1118 |
| BtsCI | GGATG | 8 cut(s) | 111, 158, 366, 598, 705, 1102, 1126, 1770 |
| BtsI | GCAGTG | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 3 cut(s) | 150, 1345, 1459 |
| Cac8I | GCNNGC | 1 cut(s) | 556 |
| CfoI | GCGC | 2 cut(s) | 1274, 1372 |
| Cfr10I | RCCGGY | 1 cut(s) | 1019 |
| Cfr13I | GGNCC | 4 cut(s) | 12, 367, 767, 2110 |
| ClaI | ATCGAT | 4 cut(s) | 42, 820, 1739, 1981 |
| CsiI | ACCWGGT | 1 cut(s) | 930 |
| CspAI | ACCGGT | 1 cut(s) | 1019 |
| CviAII | CATG | 5 cut(s) | 923, 1052, 1121, 1367, 1682 |
| DdeI | CTNAG | 4 cut(s) | 201, 1263, 1330, 1998 |
| DraI | TTTAAA | 2 cut(s) | 1297, 2082 |
| EaeI | YGGCCR | 1 cut(s) | 907 |
| Eco105I | TACGTA | 2 cut(s) | 647, 1240 |
| Eco24I | GRGCYC | 3 cut(s) | 556, 917, 1063 |
| Eco32I | GATATC | 1 cut(s) | 602 |
| Eco47I | GGWCC | 3 cut(s) | 367, 767, 2110 |
| Eco81I | CCTNAGG | 1 cut(s) | 1998 |
| Eco88I | CYCGRG | 1 cut(s) | 2018 |
| EcoRII | CCWGG | 1 cut(s) | 930 |
| EcoRV | GATATC | 1 cut(s) | 602 |
| EcoT22I | ATGCAT | 2 cut(s) | 421, 779 |
| EcoT38I | GRGCYC | 3 cut(s) | 556, 917, 1063 |
| FaeI | CATG | 5 cut(s) | 926, 1055, 1124, 1370, 1685 |
| FaqI | GGGAC | 3 cut(s) | 1445, 1533, 1758 |
| FatI | CATG | 5 cut(s) | 922, 1051, 1120, 1366, 1681 |
| FauI | CCCGC | 3 cut(s) | 563, 958, 1267 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| FbaI | TGATCA | 1 cut(s) | 1552 |
| FokI | GGATG | 8 cut(s) | 98, 145, 373, 605, 712, 1089, 1113, 1777 |
| FriOI | GRGCYC | 3 cut(s) | 556, 917, 1063 |
| FspBI | CTAG | 3 cut(s) | 116, 408, 1533 |
| GlaI | GCGC | 2 cut(s) | 1273, 1371 |
| GsuI | CTGGAG | 1 cut(s) | 1369 |
| HaeIII | GGCC | 2 cut(s) | 14, 909 |
| HapII | CCGG | 4 cut(s) | 707, 910, 986, 1020 |
| HhaI | GCGC | 2 cut(s) | 1274, 1372 |
| Hin1II | CATG | 5 cut(s) | 926, 1055, 1124, 1370, 1685 |
| Hin6I | GCGC | 2 cut(s) | 1272, 1370 |
| HinP1I | GCGC | 2 cut(s) | 1272, 1370 |
| HpaII | CCGG | 4 cut(s) | 707, 910, 986, 1020 |
| Hpy166II | GTNNAC | 3 cut(s) | 274, 430, 1115 |
| Hpy188I | TCNGA | 9 cut(s) | 92, 463, 592, 671, 1249, 1327, 1333, 1624, 2114 |
| Hpy188III | TCNNGA | 9 cut(s) | 402, 794, 1434, 1484, 1613, 1745, 1775, 1869, 1997 |
| Hpy8I | GTNNAC | 3 cut(s) | 274, 430, 1115 |
| Hpy99I | CGWCG | 2 cut(s) | 592, 1844 |
| HpyAV | CCTTC | 4 cut(s) | 207, 506, 1074, 1476 |
| HpyCH4III | ACNGT | 2 cut(s) | 667, 1891 |
| HpyCH4IV | ACGT | 8 cut(s) | 508, 587, 646, 1111, 1117, 1191, 1239, 1497 |
| HpyCH4V | TGCA | 9 cut(s) | 419, 777, 1046, 1225, 1345, 1446, 1457, 1900, 2008 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 4 cut(s) | 201, 1263, 1330, 1998 |
| HpySE526I | ACGT | 8 cut(s) | 508, 587, 646, 1111, 1117, 1191, 1239, 1497 |
| Hsp92II | CATG | 5 cut(s) | 926, 1055, 1124, 1370, 1685 |
| HspAI | GCGC | 2 cut(s) | 1272, 1370 |
| Ksp22I | TGATCA | 1 cut(s) | 1552 |
| LmnI | GCTCC | 4 cut(s) | 404, 551, 912, 1277 |
| LweI | GCATC | 7 cut(s) | 211, 428, 583, 693, 764, 1135, 1755 |
| MabI | ACCWGGT | 1 cut(s) | 930 |
| MaeI | CTAG | 3 cut(s) | 116, 408, 1533 |
| MaeII | ACGT | 8 cut(s) | 508, 587, 646, 1111, 1117, 1191, 1239, 1497 |
| MaeIII | GTNAC | 3 cut(s) | 545, 1159, 1192 |
| MboII | GAAGA | 4 cut(s) | 1722, 1869, 2016, 2019 |
| MflI | RGATCY | 2 cut(s) | 463, 888 |
| MhlI | GDGCHC | 4 cut(s) | 556, 917, 992, 1063 |
| MlyI | GAGTC | 6 cut(s) | 124, 694, 1322, 1657, 1950, 2030 |
| MmeI | TCCRAC | 2 cut(s) | 441, 570 |
| Mph1103I | ATGCAT | 2 cut(s) | 421, 779 |
| MroXI | GAANNNNTTC | 2 cut(s) | 627, 1864 |
| MslI | CAYNNNNRTG | 2 cut(s) | 261, 1020 |
| MspI | CCGG | 4 cut(s) | 707, 910, 986, 1020 |
| MspR9I | CCNGG | 2 cut(s) | 932, 987 |
| Mva1269I | GAATGC | 1 cut(s) | 1900 |
| MvaI | CCWGG | 1 cut(s) | 932 |
| MvnI | CGCG | 4 cut(s) | 278, 772, 1272, 1274 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NciI | CCSGG | 1 cut(s) | 987 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NlaIII | CATG | 5 cut(s) | 926, 1055, 1124, 1370, 1685 |
| NlaIV | GGNNCC | 6 cut(s) | 49, 369, 465, 553, 664, 914 |
| NmuCI | GTSAC | 1 cut(s) | 1192 |
| NsiI | ATGCAT | 2 cut(s) | 421, 779 |
| NspI | RCATGY | 1 cut(s) | 1055 |
| NspV | TTCGAA | 3 cut(s) | 787, 856, 1309 |
| PciI | ACATGT | 1 cut(s) | 1051 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1768 |
| PctI | GAATGC | 1 cut(s) | 1900 |
| PdmI | GAANNNNTTC | 2 cut(s) | 627, 1864 |
| PflFI | GACNNNGTC | 1 cut(s) | 932 |
| PinAI | ACCGGT | 1 cut(s) | 1019 |
| PleI | GAGTC | 6 cut(s) | 124, 693, 1322, 1656, 1949, 2029 |
| PpsI | GAGTC | 6 cut(s) | 124, 693, 1322, 1656, 1949, 2029 |
| Ppu21I | YACGTR | 4 cut(s) | 509, 647, 1112, 1240 |
| PscI | ACATGT | 1 cut(s) | 1051 |
| PshBI | ATTAAT | 1 cut(s) | 77 |
| Psp1406I | AACGTT | 1 cut(s) | 1497 |
| Psp6I | CCWGG | 1 cut(s) | 930 |
| PspGI | CCWGG | 1 cut(s) | 930 |
| PspN4I | GGNNCC | 6 cut(s) | 49, 369, 465, 553, 664, 914 |
| PspPI | GGNCC | 4 cut(s) | 12, 367, 767, 2110 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 850, 882, 1000, 1032 |
| PstI | CTGCAG | 1 cut(s) | 1048 |
| PsuI | RGATCY | 2 cut(s) | 463, 888 |
| PsyI | GACNNNGTC | 1 cut(s) | 932 |
| RseI | CAYNNNNRTG | 2 cut(s) | 261, 1020 |
| Sau96I | GGNCC | 4 cut(s) | 12, 367, 767, 2110 |
| SchI | GAGTC | 6 cut(s) | 124, 694, 1322, 1657, 1950, 2030 |
| ScrFI | CCNGG | 2 cut(s) | 932, 987 |
| SduI | GDGCHC | 4 cut(s) | 556, 917, 992, 1063 |
| SexAI | ACCWGGT | 1 cut(s) | 930 |
| SfaNI | GCATC | 7 cut(s) | 211, 428, 583, 693, 764, 1135, 1755 |
| SfcI | CTRYAG | 3 cut(s) | 951, 1044, 1890 |
| SfuI | TTCGAA | 3 cut(s) | 787, 856, 1309 |
| SinI | GGWCC | 3 cut(s) | 367, 767, 2110 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 261, 1020 |
| SmlI | CTYRAG | 1 cut(s) | 423 |
| SmoI | CTYRAG | 1 cut(s) | 423 |
| SnaBI | TACGTA | 2 cut(s) | 647, 1240 |
| SsiI | CCGC | 6 cut(s) | 51, 278, 556, 770, 965, 1274 |
| SspI | AATATT | 2 cut(s) | 329, 1180 |
| SspMI | CTAG | 3 cut(s) | 116, 408, 1533 |
| StyD4I | CCNGG | 2 cut(s) | 930, 985 |
| TaaI | ACNGT | 2 cut(s) | 667, 1891 |
| TaiI | ACGT | 8 cut(s) | 511, 590, 649, 1114, 1120, 1194, 1242, 1500 |
| TatI | WGTACW | 4 cut(s) | 271, 427, 878, 1393 |
| TscAI | CASTG | 3 cut(s) | 157, 1352, 1459 |
| TseFI | GTSAC | 1 cut(s) | 1192 |
| Tsp45I | GTSAC | 1 cut(s) | 1192 |
| TspDTI | ATGAA | 8 cut(s) | 156, 359, 814, 1004, 1091, 1490, 1711, 1981 |
| TspGWI | ACGGA | 5 cut(s) | 380, 564, 1719, 1777, 2056 |
| TspRI | CASTG | 3 cut(s) | 157, 1352, 1459 |
| Tth111I | GACNNNGTC | 1 cut(s) | 932 |
| VpaK11BI | GGWCC | 3 cut(s) | 367, 767, 2110 |
| VspI | ATTAAT | 1 cut(s) | 77 |
| XapI | RAATTY | 5 cut(s) | 714, 1082, 1376, 1568, 1949 |
| XceI | RCATGY | 1 cut(s) | 1055 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 731 |
| XmnI | GAANNNNTTC | 2 cut(s) | 627, 1864 |
| XspI | CTAG | 3 cut(s) | 116, 408, 1533 |
| Zsp2I | ATGCAT | 2 cut(s) | 421, 779 |