DNA-directed RNA polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00170 |
| malus_domestica | MD01G1014400.v1.1 |
| pyrus_communis | pycom12397g00020 pycom12397g00340 |
| rosa_chinensis | RchiOBHm_Chr4g0421201 |
| rosa_laevigata | RLG00000000048 RLG00000000088 RLG00000000117 RLG00000000174 RLG00000000232 RLG00000000233 RLG00000000247 RLG00000000283 RLG00000000313 RLG00000000317 RLG00000000339 |
| rosa_multiflora | Rmu_sc0001741.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00119090 Rroxscaffold_2G00119100 |
| rosa_rugosa | RorugMtG0001800 |
| rosa_samantha | Rh2AG294100 Rh2AG294200 Rh2DG057700 Rh2DG318000 Rh2DG318100 Rh4CG233400 Rh4CG244200 Rh7BG354800 Rh7CG382200 |
| rosa_wichuraiana | Rw4G006960 Rw4G006970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3081, 3191 |
| Acc65I | GGTACC | 1 cut(s) | 3890 |
| AccB1I | GGYRCC | 3 cut(s) | 569, 1032, 3890 |
| AccBSI | CCGCTC | 2 cut(s) | 2472, 3818 |
| AccI | GTMKAC | 1 cut(s) | 1269 |
| AccII | CGCG | 4 cut(s) | 185, 1179, 1181, 3693 |
| AclI | AACGTT | 2 cut(s) | 1404, 3861 |
| AcoI | YGGCCR | 1 cut(s) | 643 |
| AcuI | CTGAAG | 1 cut(s) | 1443 |
| AflIII | ACRYGT | 3 cut(s) | 958, 1016, 1022 |
| AgeI | ACCGGT | 1 cut(s) | 926 |
| AjiI | CACGTC | 1 cut(s) | 1025 |
| AjnI | CCWGG | 6 cut(s) | 21, 837, 2092, 2298, 3247, 3549 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2830, 2862 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3243, 3275 |
| AluBI | AGCT | 4 cut(s) | 314, 857, 3490, 3677 |
| AluI | AGCT | 4 cut(s) | 314, 857, 3490, 3677 |
| Alw21I | GWGCWC | 1 cut(s) | 3915 |
| Alw44I | GTGCAC | 1 cut(s) | 3911 |
| Ama87I | CYCGRG | 4 cut(s) | 1916, 1937, 3122, 3798 |
| AoxI | GGCC | 5 cut(s) | 643, 673, 2466, 2854, 3349 |
| ApaLI | GTGCAC | 1 cut(s) | 3911 |
| ApeKI | GCWGC | 1 cut(s) | 3670 |
| AseI | ATTAAT | 1 cut(s) | 362 |
| AsiGI | ACCGGT | 1 cut(s) | 926 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 534, 1783, 3044, 3965 |
| Asp718I | GGTACC | 1 cut(s) | 3890 |
| AspLEI | GCGC | 4 cut(s) | 1181, 1279, 3693, 3695 |
| AspS9I | GGNCC | 6 cut(s) | 674, 2412, 2434, 2467, 2855, 3349 |
| AsuC2I | CCSGG | 5 cut(s) | 894, 1695, 2142, 3651, 3824 |
| AsuHPI | GGTGA | 2 cut(s) | 3347, 3639 |
| AsuII | TTCGAA | 3 cut(s) | 694, 1216, 2032 |
| AvaI | CYCGRG | 4 cut(s) | 1916, 1937, 3122, 3798 |
| AvaII | GGWCC | 2 cut(s) | 2412, 2434 |
| BaeGI | GKGCMC | 3 cut(s) | 899, 1035, 3915 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 471, 504, 1954, 1987, 3288, 3321 |
| BamHI | GGATCC | 2 cut(s) | 370, 2302 |
| BanI | GGYRCC | 3 cut(s) | 569, 1032, 3890 |
| BanII | GRGCYC | 3 cut(s) | 463, 824, 970 |
| BbsI | GAAGAC | 1 cut(s) | 1935 |
| Bbv12I | GWGCWC | 1 cut(s) | 3915 |
| BbvI | GCAGC | 1 cut(s) | 3657 |
| BccI | CCATC | 4 cut(s) | 171, 2095, 3078, 3620 |
| BceAI | ACGGC | 2 cut(s) | 630, 674 |
| BciT130I | CCWGG | 6 cut(s) | 23, 839, 2094, 2300, 3249, 3551 |
| BciVI | GTATCC | 1 cut(s) | 472 |
| BclI | TGATCA | 2 cut(s) | 1138, 1468 |
| BcnI | CCSGG | 5 cut(s) | 894, 1695, 2142, 3651, 3824 |
| BfaI | CTAG | 7 cut(s) | 119, 315, 1440, 2327, 3327, 3410, 3869 |
| BfmI | CTRYAG | 4 cut(s) | 858, 951, 3210, 3495 |
| BfuI | GTATCC | 1 cut(s) | 472 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2019 |
| BglII | AGATCT | 2 cut(s) | 2824, 3329 |
| BisI | GCNGC | 4 cut(s) | 568, 2125, 3671, 3816 |
| BlpI | GCTNAGC | 1 cut(s) | 3486 |
| BlsI | GCNGC | 4 cut(s) | 569, 2126, 3672, 3817 |
| BmcAI | AGTACT | 1 cut(s) | 1261 |
| Bme18I | GGWCC | 2 cut(s) | 2412, 2434 |
| BmeT110I | CYCGRG | 4 cut(s) | 1916, 1937, 3122, 3798 |
| BmgBI | CACGTC | 1 cut(s) | 1025 |
| BmgT120I | GGNCC | 6 cut(s) | 674, 2412, 2434, 2467, 2855, 3349 |
| BmrI | ACTGGG | 1 cut(s) | 2440 |
| BmsI | GCATC | 7 cut(s) | 118, 335, 490, 600, 671, 2136, 3755 |
| BmuI | ACTGGG | 1 cut(s) | 2440 |
| BpiI | GAAGAC | 1 cut(s) | 1935 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 811, 843, 2456, 2488 |
| BpmI | CTGGAG | 4 cut(s) | 1276, 2097, 2115, 3231 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3486 |
| Bpu14I | TTCGAA | 3 cut(s) | 694, 1216, 2032 |
| BpuEI | CTTGAG | 1 cut(s) | 2955 |
| BpuMI | CCSGG | 5 cut(s) | 894, 1695, 2142, 3651, 3824 |
| Bsa29I | ATCGAT | 4 cut(s) | 1658, 1900, 3401, 3834 |
| BsaAI | YACGTR | 4 cut(s) | 416, 554, 1019, 1290 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1392 |
| BsaJI | CCNNGG | 8 cut(s) | 1917, 2298, 2646, 3121, 3464, 3549, 3550, 3823 |
| BsaWI | WCCGGW | 2 cut(s) | 926, 3893 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 843, 873, 3243, 3273 |
| Bse118I | RCCGGY | 1 cut(s) | 926 |
| Bse1I | ACTGG | 4 cut(s) | 287, 1259, 1359, 2435 |
| Bse3DI | GCAATG | 2 cut(s) | 684, 2306 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1392 |
| BseBI | CCWGG | 6 cut(s) | 23, 839, 2094, 2300, 3249, 3551 |
| BseCI | ATCGAT | 4 cut(s) | 1658, 1900, 3401, 3834 |
| BseDI | CCNNGG | 8 cut(s) | 1917, 2298, 2646, 3121, 3464, 3549, 3550, 3823 |
| BseJI | GATNNNNATC | 1 cut(s) | 1392 |
| BseMI | GCAATG | 2 cut(s) | 684, 2306 |
| BseMII | CTCAG | 2 cut(s) | 1161, 3477 |
| BseNI | ACTGG | 4 cut(s) | 287, 1259, 1359, 2435 |
| BsePI | GCGCGC | 1 cut(s) | 3691 |
| BseRI | GAGGAG | 1 cut(s) | 2477 |
| BseSI | GKGCMC | 3 cut(s) | 899, 1035, 3915 |
| BseXI | GCAGC | 1 cut(s) | 3657 |
| BsgI | GTGCAG | 3 cut(s) | 1372, 1383, 3578 |
| Bsh1236I | CGCG | 4 cut(s) | 185, 1179, 1181, 3693 |
| BshFI | GGCC | 5 cut(s) | 645, 675, 2468, 2856, 3351 |
| BshNI | GGYRCC | 3 cut(s) | 569, 1032, 3890 |
| BshTI | ACCGGT | 1 cut(s) | 926 |
| BshVI | ATCGAT | 4 cut(s) | 1658, 1900, 3401, 3834 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3915 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1916, 1937, 3122, 3798 |
| BsiSI | CCGG | 9 cut(s) | 614, 893, 927, 1280, 1695, 2141, 3651, 3823, 3894 |
| BsiWI | CGTACG | 1 cut(s) | 2699 |
| BslFI | GGGAC | 3 cut(s) | 1352, 1677, 2447 |
| BsmFI | GGGAC | 3 cut(s) | 1352, 1677, 2447 |
| BsmI | GAATGC | 1 cut(s) | 1819 |
| BsnI | GGCC | 5 cut(s) | 645, 675, 2468, 2856, 3351 |
| BsoBI | CYCGRG | 4 cut(s) | 1916, 1937, 3122, 3798 |
| Bsp119I | TTCGAA | 3 cut(s) | 694, 1216, 2032 |
| Bsp1286I | GDGCHC | 6 cut(s) | 463, 824, 899, 970, 1035, 3915 |
| Bsp1407I | TGTACA | 2 cut(s) | 178, 1300 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3486 |
| BspANI | GGCC | 5 cut(s) | 645, 675, 2468, 2856, 3351 |
| BspCNI | CTCAG | 2 cut(s) | 1162, 3478 |
| BspDI | ATCGAT | 4 cut(s) | 1658, 1900, 3401, 3834 |
| BspFNI | CGCG | 4 cut(s) | 185, 1179, 1181, 3693 |
| BspMAI | CTGCAG | 1 cut(s) | 955 |
| BspQI | GCTCTTC | 1 cut(s) | 2479 |
| BspT104I | TTCGAA | 3 cut(s) | 694, 1216, 2032 |
| BspT107I | GGYRCC | 3 cut(s) | 569, 1032, 3890 |
| BsrBI | CCGCTC | 2 cut(s) | 2472, 3818 |
| BsrDI | GCAATG | 2 cut(s) | 684, 2306 |
| BsrFI | RCCGGY | 1 cut(s) | 926 |
| BsrGI | TGTACA | 2 cut(s) | 178, 1300 |
| BsrI | ACTGG | 4 cut(s) | 287, 1259, 1359, 2435 |
| BssAI | RCCGGY | 1 cut(s) | 926 |
| BssECI | CCNNGG | 8 cut(s) | 1917, 2298, 2646, 3121, 3464, 3549, 3550, 3823 |
| BssHII | GCGCGC | 1 cut(s) | 3691 |
| BssNAI | GTATAC | 1 cut(s) | 1270 |
| BssT1I | CCWWGG | 2 cut(s) | 2646, 3464 |
| Bst1107I | GTATAC | 1 cut(s) | 1270 |
| Bst2UI | CCWGG | 6 cut(s) | 23, 839, 2094, 2300, 3249, 3551 |
| Bst4CI | ACNGT | 7 cut(s) | 426, 1459, 1487, 2149, 2273, 3259, 3917 |
| Bst6I | CTCTTC | 1 cut(s) | 2479 |
| BstAUI | TGTACA | 2 cut(s) | 178, 1300 |
| BstBAI | YACGTR | 4 cut(s) | 416, 554, 1019, 1290 |
| BstBI | TTCGAA | 3 cut(s) | 694, 1216, 2032 |
| BstC8I | GCNNGC | 3 cut(s) | 2470, 3675, 3693 |
| BstDEI | CTNAG | 7 cut(s) | 108, 1170, 2163, 2333, 2519, 2530, 3486 |
| BstFNI | CGCG | 4 cut(s) | 185, 1179, 1181, 3693 |
| BstHHI | GCGC | 4 cut(s) | 1181, 1279, 3693, 3695 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 681, 2019, 3815 |
| BstNI | CCWGG | 6 cut(s) | 23, 839, 2094, 2300, 3249, 3551 |
| BstNSI | RCATGY | 1 cut(s) | 962 |
| BstSFI | CTRYAG | 4 cut(s) | 858, 951, 3210, 3495 |
| BstSLI | GKGCMC | 3 cut(s) | 899, 1035, 3915 |
| BstSNI | TACGTA | 2 cut(s) | 554, 1290 |
| BstUI | CGCG | 4 cut(s) | 185, 1179, 1181, 3693 |
| BstV1I | GCAGC | 1 cut(s) | 3657 |
| BstV2I | GAAGAC | 1 cut(s) | 1935 |
| BstX2I | RGATCY | 9 cut(s) | 370, 795, 1355, 2302, 2824, 3329, 3528, 3545, 3561 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 170, 2093 |
| BstYI | RGATCY | 9 cut(s) | 370, 795, 1355, 2302, 2824, 3329, 3528, 3545, 3561 |
| BstZ17I | GTATAC | 1 cut(s) | 1270 |
| Bsu15I | ATCGAT | 4 cut(s) | 1658, 1900, 3401, 3834 |
| BsuI | GTATCC | 1 cut(s) | 472 |
| BsuRI | GGCC | 5 cut(s) | 645, 675, 2468, 2856, 3351 |
| BsuTUI | ATCGAT | 4 cut(s) | 1658, 1900, 3401, 3834 |
| BtrI | CACGTC | 1 cut(s) | 1025 |
| BtsI | GCAGTG | 1 cut(s) | 57 |
| BtsIMutI | CAGTG | 3 cut(s) | 57, 1252, 1366 |
| Cac8I | GCNNGC | 3 cut(s) | 2470, 3675, 3693 |
| CfoI | GCGC | 4 cut(s) | 1181, 1279, 3693, 3695 |
| Cfr10I | RCCGGY | 1 cut(s) | 926 |
| Cfr13I | GGNCC | 6 cut(s) | 674, 2412, 2434, 2467, 2855, 3349 |
| ClaI | ATCGAT | 4 cut(s) | 1658, 1900, 3401, 3834 |
| CsiI | ACCWGGT | 1 cut(s) | 837 |
| CspAI | ACCGGT | 1 cut(s) | 926 |
| CviAII | CATG | 6 cut(s) | 830, 959, 1028, 1274, 1592, 3263 |
| DdeI | CTNAG | 7 cut(s) | 108, 1170, 2163, 2333, 2519, 2530, 3486 |
| DraI | TTTAAA | 4 cut(s) | 1197, 1204, 2001, 2958 |
| EaeI | YGGCCR | 1 cut(s) | 643 |
| Eam1104I | CTCTTC | 1 cut(s) | 2479 |
| EarI | CTCTTC | 1 cut(s) | 2479 |
| EciI | GGCGGA | 1 cut(s) | 2037 |
| Eco105I | TACGTA | 2 cut(s) | 554, 1290 |
| Eco130I | CCWWGG | 2 cut(s) | 2646, 3464 |
| Eco24I | GRGCYC | 3 cut(s) | 463, 824, 970 |
| Eco32I | GATATC | 2 cut(s) | 509, 2083 |
| Eco47I | GGWCC | 2 cut(s) | 2412, 2434 |
| Eco57I | CTGAAG | 1 cut(s) | 1443 |
| Eco88I | CYCGRG | 4 cut(s) | 1916, 1937, 3122, 3798 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2855, 3349 |
| EcoRI | GAATTC | 4 cut(s) | 2845, 3040, 3450, 3459 |
| EcoRII | CCWGG | 6 cut(s) | 21, 837, 2092, 2298, 3247, 3549 |
| EcoRV | GATATC | 2 cut(s) | 509, 2083 |
| EcoT14I | CCWWGG | 2 cut(s) | 2646, 3464 |
| EcoT22I | ATGCAT | 2 cut(s) | 328, 686 |
| EcoT38I | GRGCYC | 3 cut(s) | 463, 824, 970 |
| ErhI | CCWWGG | 2 cut(s) | 2646, 3464 |
| FaeI | CATG | 6 cut(s) | 833, 962, 1031, 1277, 1595, 3266 |
| FaqI | GGGAC | 3 cut(s) | 1352, 1677, 2447 |
| FatI | CATG | 6 cut(s) | 829, 958, 1027, 1273, 1591, 3262 |
| FauI | CCCGC | 4 cut(s) | 865, 1174, 2304, 2477 |
| FauNDI | CATATG | 1 cut(s) | 294 |
| FbaI | TGATCA | 2 cut(s) | 1138, 1468 |
| FblI | GTMKAC | 1 cut(s) | 1269 |
| Fnu4HI | GCNGC | 4 cut(s) | 568, 2125, 3671, 3816 |
| FriOI | GRGCYC | 3 cut(s) | 463, 824, 970 |
| Fsp4HI | GCNGC | 4 cut(s) | 568, 2125, 3671, 3816 |
| FspBI | CTAG | 7 cut(s) | 119, 315, 1440, 2327, 3327, 3410, 3869 |
| GlaI | GCGC | 4 cut(s) | 1180, 1278, 3692, 3694 |
| GluI | GCNGC | 4 cut(s) | 568, 2125, 3671, 3816 |
| GsuI | CTGGAG | 4 cut(s) | 1276, 2097, 2115, 3231 |
| HaeIII | GGCC | 5 cut(s) | 645, 675, 2468, 2856, 3351 |
| HapII | CCGG | 9 cut(s) | 614, 893, 927, 1280, 1695, 2141, 3651, 3823, 3894 |
| HhaI | GCGC | 4 cut(s) | 1181, 1279, 3693, 3695 |
| Hin1II | CATG | 6 cut(s) | 833, 962, 1031, 1277, 1595, 3266 |
| Hin6I | GCGC | 4 cut(s) | 1179, 1277, 3691, 3693 |
| HinP1I | GCGC | 4 cut(s) | 1179, 1277, 3691, 3693 |
| HincII | GTYRAC | 1 cut(s) | 2931 |
| HindII | GTYRAC | 1 cut(s) | 2931 |
| HpaI | GTTAAC | 1 cut(s) | 2931 |
| HpaII | CCGG | 9 cut(s) | 614, 893, 927, 1280, 1695, 2141, 3651, 3823, 3894 |
| HphI | GGTGA | 2 cut(s) | 3347, 3639 |
| Hpy166II | GTNNAC | 9 cut(s) | 181, 337, 939, 1022, 1270, 2369, 2420, 2931, 3913 |
| Hpy8I | GTNNAC | 9 cut(s) | 181, 337, 939, 1022, 1270, 2369, 2420, 2931, 3913 |
| HpyAV | CCTTC | 6 cut(s) | 114, 413, 981, 1418, 3284, 3362 |
| HpyCH4III | ACNGT | 7 cut(s) | 426, 1459, 1487, 2149, 2273, 3259, 3917 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 681, 2019, 3815 |
| HpyF3I | CTNAG | 7 cut(s) | 108, 1170, 2163, 2333, 2519, 2530, 3486 |
| Hsp92II | CATG | 6 cut(s) | 833, 962, 1031, 1277, 1595, 3266 |
| HspAI | GCGC | 4 cut(s) | 1179, 1277, 3691, 3693 |
| KpnI | GGTACC | 1 cut(s) | 3894 |
| Ksp22I | TGATCA | 2 cut(s) | 1138, 1468 |
| KspAI | GTTAAC | 1 cut(s) | 2931 |
| LguI | GCTCTTC | 1 cut(s) | 2479 |
| LmnI | GCTCC | 5 cut(s) | 311, 458, 819, 1184, 3251 |
| Lsp1109I | GCAGC | 1 cut(s) | 3657 |
| LweI | GCATC | 7 cut(s) | 118, 335, 490, 600, 671, 2136, 3755 |
| MabI | ACCWGGT | 1 cut(s) | 837 |
| MaeI | CTAG | 7 cut(s) | 119, 315, 1440, 2327, 3327, 3410, 3869 |
| MaeIII | GTNAC | 6 cut(s) | 452, 721, 1066, 1099, 3304, 3713 |
| MbiI | CCGCTC | 2 cut(s) | 2472, 3818 |
| MfeI | CAATTG | 1 cut(s) | 2755 |
| MflI | RGATCY | 9 cut(s) | 370, 795, 1355, 2302, 2824, 3329, 3528, 3545, 3561 |
| MhlI | GDGCHC | 6 cut(s) | 463, 824, 899, 970, 1035, 3915 |
| MlyI | GAGTC | 6 cut(s) | 601, 1567, 1869, 1949, 2779, 3200 |
| MmeI | TCCRAC | 5 cut(s) | 73, 348, 2140, 2586, 3410 |
| Mph1103I | ATGCAT | 2 cut(s) | 328, 686 |
| MroXI | GAANNNNTTC | 4 cut(s) | 534, 1783, 3044, 3965 |
| MslI | CAYNNNNRTG | 3 cut(s) | 168, 587, 927 |
| MspA1I | CMGCKG | 1 cut(s) | 2124 |
| MspI | CCGG | 9 cut(s) | 614, 893, 927, 1280, 1695, 2141, 3651, 3823, 3894 |
| MunI | CAATTG | 1 cut(s) | 2755 |
| Mva1269I | GAATGC | 1 cut(s) | 1819 |
| MvaI | CCWGG | 6 cut(s) | 23, 839, 2094, 2300, 3249, 3551 |
| MvnI | CGCG | 4 cut(s) | 185, 1179, 1181, 3693 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 681, 2019, 3815 |
| NciI | CCSGG | 5 cut(s) | 894, 1695, 2142, 3651, 3824 |
| NdeI | CATATG | 1 cut(s) | 294 |
| NlaIII | CATG | 6 cut(s) | 833, 962, 1031, 1277, 1595, 3266 |
| NmeAIII | GCCGAG | 1 cut(s) | 2039 |
| NmuCI | GTSAC | 2 cut(s) | 721, 1099 |
| NsiI | ATGCAT | 2 cut(s) | 328, 686 |
| NspI | RCATGY | 1 cut(s) | 962 |
| NspV | TTCGAA | 3 cut(s) | 694, 1216, 2032 |
| PaeR7I | CTCGAG | 1 cut(s) | 3798 |
| PasI | CCCWGGG | 1 cut(s) | 3550 |
| PauI | GCGCGC | 1 cut(s) | 3691 |
| PciI | ACATGT | 1 cut(s) | 958 |
| PciSI | GCTCTTC | 1 cut(s) | 2479 |
| PctI | GAATGC | 1 cut(s) | 1819 |
| PdmI | GAANNNNTTC | 4 cut(s) | 534, 1783, 3044, 3965 |
| Pfl23II | CGTACG | 1 cut(s) | 2699 |
| PflFI | GACNNNGTC | 1 cut(s) | 839 |
| PfoI | TCCNGGA | 3 cut(s) | 21, 2092, 3247 |
| PinAI | ACCGGT | 1 cut(s) | 926 |
| PkrI | GCNGC | 4 cut(s) | 569, 2126, 3672, 3817 |
| PleI | GAGTC | 6 cut(s) | 600, 1566, 1868, 1948, 2778, 3200 |
| PpsI | GAGTC | 6 cut(s) | 600, 1566, 1868, 1948, 2778, 3200 |
| Ppu21I | YACGTR | 4 cut(s) | 416, 554, 1019, 1290 |
| PscI | ACATGT | 1 cut(s) | 958 |
| PshBI | ATTAAT | 1 cut(s) | 362 |
| PsiI | TTATAA | 2 cut(s) | 3081, 3191 |
| Psp1406I | AACGTT | 2 cut(s) | 1404, 3861 |
| Psp6I | CCWGG | 6 cut(s) | 21, 837, 2092, 2298, 3247, 3549 |
| PspGI | CCWGG | 6 cut(s) | 21, 837, 2092, 2298, 3247, 3549 |
| PspLI | CGTACG | 1 cut(s) | 2699 |
| PspPI | GGNCC | 6 cut(s) | 674, 2412, 2434, 2467, 2855, 3349 |
| PspXI | VCTCGAGB | 1 cut(s) | 3798 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 757, 789, 907, 939, 2683, 2715 |
| PstI | CTGCAG | 1 cut(s) | 955 |
| PsuI | RGATCY | 9 cut(s) | 370, 795, 1355, 2302, 2824, 3329, 3528, 3545, 3561 |
| PsyI | GACNNNGTC | 1 cut(s) | 839 |
| PteI | GCGCGC | 1 cut(s) | 3691 |
| RseI | CAYNNNNRTG | 3 cut(s) | 168, 587, 927 |
| SapI | GCTCTTC | 1 cut(s) | 2479 |
| SatI | GCNGC | 4 cut(s) | 568, 2125, 3671, 3816 |
| Sau96I | GGNCC | 6 cut(s) | 674, 2412, 2434, 2467, 2855, 3349 |
| ScaI | AGTACT | 1 cut(s) | 1261 |
| SchI | GAGTC | 6 cut(s) | 601, 1567, 1869, 1949, 2779, 3200 |
| SduI | GDGCHC | 6 cut(s) | 463, 824, 899, 970, 1035, 3915 |
| SexAI | ACCWGGT | 1 cut(s) | 837 |
| SfaNI | GCATC | 7 cut(s) | 118, 335, 490, 600, 671, 2136, 3755 |
| SfcI | CTRYAG | 4 cut(s) | 858, 951, 3210, 3495 |
| Sfr274I | CTCGAG | 1 cut(s) | 3798 |
| SfuI | TTCGAA | 3 cut(s) | 694, 1216, 2032 |
| SinI | GGWCC | 2 cut(s) | 2412, 2434 |
| SlaI | CTCGAG | 1 cut(s) | 3798 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 168, 587, 927 |
| SmlI | CTYRAG | 2 cut(s) | 2970, 3798 |
| SmoI | CTYRAG | 2 cut(s) | 2970, 3798 |
| SnaBI | TACGTA | 2 cut(s) | 554, 1290 |
| SspI | AATATT | 5 cut(s) | 236, 2070, 2792, 2939, 2984 |
| SspMI | CTAG | 7 cut(s) | 119, 315, 1440, 2327, 3327, 3410, 3869 |
| StyI | CCWWGG | 2 cut(s) | 2646, 3464 |
| TaaI | ACNGT | 7 cut(s) | 426, 1459, 1487, 2149, 2273, 3259, 3917 |
| TaqII | GACCGA | 1 cut(s) | 287 |
| TatI | WGTACW | 5 cut(s) | 178, 334, 785, 1259, 1300 |
| TauI | GCSGC | 3 cut(s) | 570, 2127, 3818 |
| TscAI | CASTG | 3 cut(s) | 64, 1259, 1366 |
| TseFI | GTSAC | 2 cut(s) | 721, 1099 |
| TseI | GCWGC | 1 cut(s) | 3670 |
| Tsp45I | GTSAC | 2 cut(s) | 721, 1099 |
| TspGWI | ACGGA | 3 cut(s) | 471, 1975, 2562 |
| TspRI | CASTG | 3 cut(s) | 64, 1259, 1366 |
| Tth111I | GACNNNGTC | 1 cut(s) | 839 |
| VneI | GTGCAC | 1 cut(s) | 3911 |
| VpaK11BI | GGWCC | 2 cut(s) | 2412, 2434 |
| VspI | ATTAAT | 1 cut(s) | 362 |
| XbaI | TCTAGA | 2 cut(s) | 2326, 3326 |
| XceI | RCATGY | 1 cut(s) | 962 |
| XhoI | CTCGAG | 1 cut(s) | 3798 |
| XmiI | GTMKAC | 1 cut(s) | 1269 |
| XmnI | GAANNNNTTC | 4 cut(s) | 534, 1783, 3044, 3965 |
| XspI | CTAG | 7 cut(s) | 119, 315, 1440, 2327, 3327, 3410, 3869 |
| ZrmI | AGTACT | 1 cut(s) | 1261 |
| Zsp2I | ATGCAT | 2 cut(s) | 328, 686 |