DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00170 |
| malus_domestica | MD01G1014400.v1.1 |
| pyrus_communis | pycom12397g00020 pycom12397g00340 |
| rosa_chinensis | RchiOBHm_Chr4g0421201 |
| rosa_laevigata | RLG00000000048 RLG00000000088 RLG00000000117 RLG00000000174 RLG00000000232 RLG00000000233 RLG00000000247 RLG00000000283 RLG00000000313 RLG00000000317 RLG00000000339 |
| rosa_multiflora | Rmu_sc0001741.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00119090 Rroxscaffold_2G00119100 |
| rosa_rugosa | RorugMtG0001800 |
| rosa_samantha | Rh2AG294100 Rh2AG294200 Rh2DG057700 Rh2DG318000 Rh2DG318100 Rh4CG233400 Rh4CG244200 Rh7BG354800 Rh7CG382200 |
| rosa_wichuraiana | Rw4G006960 Rw4G006970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 176 |
| AccB1I | GGYRCC | 1 cut(s) | 176 |
| AclWI | GGATC | 2 cut(s) | 308, 321 |
| AcsI | RAATTY | 2 cut(s) | 40, 352 |
| AfaI | GTAC | 3 cut(s) | 19, 178, 279 |
| AflIII | ACRYGT | 1 cut(s) | 124 |
| AgsI | TTSAA | 2 cut(s) | 138, 347 |
| AluBI | AGCT | 2 cut(s) | 62, 257 |
| AluI | AGCT | 2 cut(s) | 62, 257 |
| AlwI | GGATC | 2 cut(s) | 308, 321 |
| ApoI | RAATTY | 2 cut(s) | 40, 352 |
| AseI | ATTAAT | 1 cut(s) | 305 |
| Asp718I | GGTACC | 1 cut(s) | 176 |
| BaeGI | GKGCMC | 1 cut(s) | 201 |
| BamHI | GGATCC | 1 cut(s) | 313 |
| BanI | GGYRCC | 1 cut(s) | 176 |
| BccI | CCATC | 1 cut(s) | 158 |
| BfaI | CTAG | 1 cut(s) | 116 |
| BmiI | GGNNCC | 3 cut(s) | 104, 178, 315 |
| BmsI | GCATC | 2 cut(s) | 40, 278 |
| BpmI | CTGGAG | 2 cut(s) | 89, 279 |
| Bse1I | ACTGG | 1 cut(s) | 106 |
| BseGI | GGATG | 2 cut(s) | 246, 269 |
| BseNI | ACTGG | 1 cut(s) | 106 |
| BseSI | GKGCMC | 1 cut(s) | 201 |
| BshNI | GGYRCC | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 1 cut(s) | 201 |
| Bsp143I | GATC | 2 cut(s) | 118, 313 |
| BspLI | GGNNCC | 3 cut(s) | 104, 178, 315 |
| BspPI | GGATC | 2 cut(s) | 308, 321 |
| BspT107I | GGYRCC | 1 cut(s) | 176 |
| BsrI | ACTGG | 1 cut(s) | 106 |
| BssMI | GATC | 2 cut(s) | 118, 313 |
| BstF5I | GGATG | 2 cut(s) | 246, 269 |
| BstKTI | GATC | 2 cut(s) | 121, 316 |
| BstMBI | GATC | 2 cut(s) | 118, 313 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 59, 109 |
| BstSLI | GKGCMC | 1 cut(s) | 201 |
| BstX2I | RGATCY | 1 cut(s) | 313 |
| BstYI | RGATCY | 1 cut(s) | 313 |
| BtsCI | GGATG | 2 cut(s) | 246, 269 |
| BtsIMutI | CAGTG | 1 cut(s) | 113 |
| Csp6I | GTAC | 3 cut(s) | 18, 177, 278 |
| CviJI | RGCY | 3 cut(s) | 62, 103, 257 |
| CviKI_1 | RGCY | 3 cut(s) | 62, 103, 257 |
| CviQI | GTAC | 3 cut(s) | 18, 177, 278 |
| DpnI | GATC | 2 cut(s) | 120, 315 |
| DpnII | GATC | 2 cut(s) | 118, 313 |
| DraI | TTTAAA | 1 cut(s) | 39 |
| EcoT22I | ATGCAT | 1 cut(s) | 271 |
| FaiI | YATR | 7 cut(s) | 14, 48, 183, 195, 237, 296, 358 |
| FokI | GGATG | 2 cut(s) | 253, 256 |
| FspBI | CTAG | 1 cut(s) | 116 |
| GsuI | CTGGAG | 2 cut(s) | 89, 279 |
| HinfI | GANTC | 1 cut(s) | 78 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 280 |
| Hpy188I | TCNGA | 1 cut(s) | 313 |
| Hpy188III | TCNNGA | 1 cut(s) | 138 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 280 |
| HpyCH4IV | ACGT | 1 cut(s) | 126 |
| HpyCH4V | TGCA | 2 cut(s) | 53, 269 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 59, 109 |
| HpySE526I | ACGT | 1 cut(s) | 126 |
| KpnI | GGTACC | 1 cut(s) | 180 |
| Kzo9I | GATC | 2 cut(s) | 118, 313 |
| LmnI | GCTCC | 3 cut(s) | 59, 108, 254 |
| LpnPI | CCDG | 2 cut(s) | 119, 243 |
| LweI | GCATC | 2 cut(s) | 40, 278 |
| MaeI | CTAG | 1 cut(s) | 116 |
| MaeII | ACGT | 1 cut(s) | 126 |
| MalI | GATC | 2 cut(s) | 120, 315 |
| MboI | GATC | 2 cut(s) | 118, 313 |
| MfeI | CAATTG | 1 cut(s) | 54 |
| MflI | RGATCY | 1 cut(s) | 313 |
| MhlI | GDGCHC | 1 cut(s) | 201 |
| MluCI | AATT | 5 cut(s) | 40, 54, 82, 284, 352 |
| MnlI | CCTC | 2 cut(s) | 105, 254 |
| Mph1103I | ATGCAT | 1 cut(s) | 271 |
| MseI | TTAA | 3 cut(s) | 38, 225, 305 |
| MunI | CAATTG | 1 cut(s) | 54 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 59, 109 |
| NdeII | GATC | 2 cut(s) | 118, 313 |
| NlaIV | GGNNCC | 3 cut(s) | 104, 178, 315 |
| NsiI | ATGCAT | 1 cut(s) | 271 |
| PfeI | GAWTC | 1 cut(s) | 78 |
| PshBI | ATTAAT | 1 cut(s) | 305 |
| PspN4I | GGNNCC | 3 cut(s) | 104, 178, 315 |
| PsuI | RGATCY | 1 cut(s) | 313 |
| RsaI | GTAC | 3 cut(s) | 19, 178, 279 |
| RsaNI | GTAC | 3 cut(s) | 18, 177, 278 |
| SaqAI | TTAA | 3 cut(s) | 38, 225, 305 |
| Sau3AI | GATC | 2 cut(s) | 118, 313 |
| SduI | GDGCHC | 1 cut(s) | 201 |
| SetI | ASST | 8 cut(s) | 31, 64, 129, 172, 182, 259, 295, 343 |
| SfaNI | GCATC | 2 cut(s) | 40, 278 |
| SgeI | CNNG | 7 cut(s) | 118, 128, 137, 150, 270, 287, 332 |
| Sse9I | AATT | 5 cut(s) | 40, 54, 82, 284, 352 |
| SspMI | CTAG | 1 cut(s) | 116 |
| TaiI | ACGT | 1 cut(s) | 129 |
| TaqII | GACCGA | 1 cut(s) | 231 |
| TasI | AATT | 5 cut(s) | 40, 54, 82, 284, 352 |
| TatI | WGTACW | 1 cut(s) | 277 |
| TfiI | GAWTC | 1 cut(s) | 78 |
| Tru1I | TTAA | 3 cut(s) | 38, 225, 305 |
| Tru9I | TTAA | 3 cut(s) | 38, 225, 305 |
| TscAI | CASTG | 1 cut(s) | 113 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 113 |
| VspI | ATTAAT | 1 cut(s) | 305 |
| XapI | RAATTY | 2 cut(s) | 40, 352 |
| XspI | CTAG | 1 cut(s) | 116 |
| Zsp2I | ATGCAT | 1 cut(s) | 271 |