Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001741.1

Orthogroup ID

OG0004622

Physical Location & Seq

Genomic Coordinates Forward (+)

52780 .. 53622

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001741.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggggaatgaatgggaagttggaagacgaaaggattttttggttagacgcatggagttggctaagcattttattcgaacaaatatagaaccagaatggatggttttatgtctattaccagttcttccgcccgagttgagaccaatcattcagatagatgggggtaaactaatgagctcggatattaatgaactctatagaagagttatttatcggaacaatactcttatcgatctcttaacaacaagtagatctacgccaggagaattagtaatgtgtcaggagaaattggtacaagaagctgtggatacacttcttgataatggaatccgtggacaaccaatgagggacggtcataataaggtttacaagtcgttttcagatgtaattgaaggaaaagagggaagatttcgtgagactctgcttggcaaacgggttgattattcggggcgttctgtcattgttgtaggtccttcactttcattacatcgatgtggattgcctcgcgaaatagcaatagagcttttccagacatttgtaattcgtggtttaattagacagcattttgcctcgaatataggagtggctaagagtaaaattcggaaaaaagagccggttgtatgggaaatacttcaggaagttatgcaacggcatcccgtattgctgaatagggcgcctactctgcatagattacgcatacaggcgttccagcccattttagtagcaggacatgctatttgtttacatccattagtttgtaagggatttaacgcagactttgatggggatcaaatgactgttcatgtacctttatctttggaggctcaagcagaggcccgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3

Protein Analysis

280

Amino Acids

31.97

Weight (kDa)

9.28

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00170
malus_domestica	MD01G1014400.v1.1
pyrus_communis	pycom12397g00020 pycom12397g00340
rosa_chinensis	RchiOBHm_Chr4g0421201
rosa_laevigata	RLG00000000048 RLG00000000088 RLG00000000117 RLG00000000174 RLG00000000232 RLG00000000233 RLG00000000247 RLG00000000283 RLG00000000313 RLG00000000317 RLG00000000339
rosa_multiflora	Rmu_sc0001741.1_g000011
rosa_roxburghii	Rroxscaffold_2G00119090 Rroxscaffold_2G00119100
rosa_rugosa	RorugMtG0001800
rosa_samantha	Rh2AG294100 Rh2AG294200 Rh2DG057700 Rh2DG318000 Rh2DG318100 Rh4CG233400 Rh4CG244200 Rh7BG354800 Rh7CG382200
rosa_wichuraiana	Rw4G006960 Rw4G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccII	CGCG	1 cut(s)	507
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	795
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	2 cut(s)	294, 807
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	177, 302, 523
AluI	AGCT	3 cut(s)	177, 302, 523
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	133, 410
AlwI	GGATC	1 cut(s)	795
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	834
ApoI	RAATTY	1 cut(s)	597
ArsI	GACNNNNNNTTYG	2 cut(s)	720, 752
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	470, 835
AsuII	TTCGAA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	179
BccI	CCATC	3 cut(s)	94, 152, 776
BceAI	ACGGC	1 cut(s)	665
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	133, 410
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	251
BlpI	GCTNAGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	470, 835
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	810
Bsa29I	ATCGAT	2 cut(s)	231, 490
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	261
BseCI	ATCGAT	2 cut(s)	231, 490
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	3 cut(s)	105, 652, 745
BseJI	GATNNNNATC	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	836
BshNI	GGYRCC	1 cut(s)	673
BshVI	ATCGAT	2 cut(s)	231, 490
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	362
BsmAI	GTCTC	2 cut(s)	133, 410
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	836
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	3 cut(s)	232, 251, 787
Bsp1720I	GCTNAGC	1 cut(s)	63
Bsp68I	TCGCGA	1 cut(s)	507
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	836
BspDI	ATCGAT	2 cut(s)	231, 490
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	675
BspPI	GGATC	1 cut(s)	795
BspT104I	TTCGAA	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	232, 251, 787
BssNI	GRCGYC	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	353, 799
Bst6I	CTCTTC	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBI	TTCGAA	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	63, 588
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	3 cut(s)	105, 652, 745
BstFNI	CGCG	1 cut(s)	507
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	3 cut(s)	235, 254, 790
BstMAI	GTCTC	2 cut(s)	133, 410
BstMBI	GATC	3 cut(s)	232, 251, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	682, 731
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	507
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
Bsu15I	ATCGAT	2 cut(s)	231, 490
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	836
BsuTUI	ATCGAT	2 cut(s)	231, 490
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	105, 652, 745
BtuMI	TCGCGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	470, 835
ClaI	ATCGAT	2 cut(s)	231, 490
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	293, 806
CviAII	CATG	3 cut(s)	52, 731, 803
CviJI	RGCY	9 cut(s)	62, 177, 302, 523, 587, 613, 712, 824, 836
CviKI_1	RGCY	9 cut(s)	62, 177, 302, 523, 587, 613, 712, 824, 836
CviQI	GTAC	2 cut(s)	293, 806
DdeI	CTNAG	2 cut(s)	63, 588
DinI	GGCGCC	1 cut(s)	675
DpnI	GATC	3 cut(s)	234, 253, 789
DpnII	GATC	3 cut(s)	232, 251, 787
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	675
EheI	GGCGCC	1 cut(s)	675
FaeI	CATG	3 cut(s)	55, 734, 806
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	3 cut(s)	51, 730, 802
FokI	GGATG	3 cut(s)	112, 639, 732
FriOI	GRGCYC	1 cut(s)	179
GlaI	GCGC	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	836
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	3 cut(s)	55, 734, 806
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HinfI	GANTC	2 cut(s)	327, 418
HpaII	CCGG	1 cut(s)	614
Hpy166II	GTNNAC	4 cut(s)	167, 335, 367, 743
Hpy188I	TCNGA	5 cut(s)	153, 181, 216, 382, 603
Hpy188III	TCNNGA	6 cut(s)	281, 317, 413, 506, 529, 635
Hpy8I	GTNNAC	4 cut(s)	167, 335, 367, 743
HpyAV	CCTTC	2 cut(s)	386, 483
HpyCH4III	ACNGT	2 cut(s)	353, 799
HpyCH4V	TGCA	2 cut(s)	646, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	682, 731
HpyF3I	CTNAG	2 cut(s)	63, 588
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	3 cut(s)	55, 734, 806
HspAI	GCGC	1 cut(s)	674
KasI	GGCGCC	1 cut(s)	673
Kzo9I	GATC	3 cut(s)	232, 251, 787
LweI	GCATC	1 cut(s)	661
MalI	GATC	3 cut(s)	234, 253, 789
MboI	GATC	3 cut(s)	232, 251, 787
MboII	GAAGA	4 cut(s)	36, 116, 213, 417
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	6 cut(s)	266, 287, 387, 540, 552, 597
Mly113I	GGCGCC	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	339, 394, 513, 580, 814, 826
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	5 cut(s)	186, 239, 551, 768, 841
MslI	CAYNNNNRTG	1 cut(s)	492
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	682, 731
NarI	GGCGCC	1 cut(s)	674
NdeII	GATC	3 cut(s)	232, 251, 787
NlaIII	CATG	3 cut(s)	55, 734, 806
NlaIV	GGNNCC	1 cut(s)	675
NruI	TCGCGA	1 cut(s)	507
NspI	RCATGY	1 cut(s)	734
NspV	TTCGAA	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	412
PluTI	GGCGCC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	470, 835
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	251
RruI	TCGCGA	1 cut(s)	507
RsaI	GTAC	2 cut(s)	294, 807
RsaNI	GTAC	2 cut(s)	293, 806
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	5 cut(s)	186, 239, 551, 768, 841
Sau3AI	GATC	3 cut(s)	232, 251, 787
Sau96I	GGNCC	2 cut(s)	470, 835
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	6 cut(s)	179, 304, 366, 472, 525, 811
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	196
SfoI	GGCGCC	1 cut(s)	675
SfuI	TTCGAA	1 cut(s)	76
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	825
SmoI	CTYRAG	1 cut(s)	825
Sse9I	AATT	6 cut(s)	266, 287, 387, 540, 552, 597
SsiI	CCGC	1 cut(s)	128
SspDI	GGCGCC	1 cut(s)	673
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	353, 799
TaqI	TCGA	4 cut(s)	76, 231, 490, 572
TasI	AATT	6 cut(s)	266, 287, 387, 540, 552, 597
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	5 cut(s)	186, 239, 551, 768, 841
Tru9I	TTAA	5 cut(s)	186, 239, 551, 768, 841
TspDTI	ATGAA	4 cut(s)	24, 204, 471, 791
TspGWI	ACGGA	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.