Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004622

Physical Location & Seq

Genomic Coordinates Forward (+)

14567732 .. 14570948

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

ATGCATGATGCAAATACTGCATCTCCAAAGTTTGATAAGAGGCGAAGAAAGCTCACATCAAATGTATGGTCTAAGTTTGAAGTGCTTCCATTGGGTCCGGATAATAAACAAAGGGCTAAATGTCTAAGATGCGGTATAACTTACTTGTGTTCTAGCAGGAATGGGACAAGAAATATGAAACGTCATATTACTTCTTGTGTGAAACAAAAAATTCTAGACCTAGGGCAGTTAGTTGTATCTCATAATGATGATGGGTCTTTGATCACAAGGTTTGCTAGATTTGATCCTGATACATTTGGTGAACTATTGGTGGCAGCTATTGTTATGCATGATTTGCCTTTTCAGTTTGTTGAGTATGATGGGATTAGAAATCTGTTTAGATCCTATCCAAATTTTTCTTTTGCTAGGCCCATAGCTAAAAAACCCACTTTCTTACGATTACGAGGTTCATTCGAATACGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACTCCAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACTGGAGCAGGTGCTATCCGAGAACAATTAGCCGATCTGGATTTGAGAATTATTATAGATTATTCGCTGTTAGAATGGAAAGAATTGGGGGAAGAAGGGTCCACGGGGAATGAATGGGAAGATCGAAAGGTTGGAAGACGAAAGGATTTTTTGGTTAGACGCATGGAGTTGGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCGCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTATCGATCTCTTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGGATACACTTCTTGATAATGGAATCCGTGGACAACCAATGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGAAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCGGGGCGTTCTGTCATTGTTGTAGGTCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTTTAATTAGACAGCATTTTGCCTCGAATATAGGAGTGGCTAAGAGTAAAATTCGGGAAAAAGAGCCGGTTGTATGGGAAATACTTCAGGAAGTTATGCAAGGGCATCCCGTATTGCTGAATAGGGCGCCTACTCTGCATAGATTAGGCATACAGGCGTTCCAGCCCATTTTAGTAGAAGGACATGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTTAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCTATTTCCGTACCAACCCAAGATATGCTTATCGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATAGGTATAATCCATATAATCGCACAAATTCGAAAAATGAAAGAATTGCCGATAATAATTATAAATATACGAAAGAACCTTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGGCAGAAAAGAGTCAATTTAGATAGCCCCTTGTGGCTCCGGTGGCGGCTAGATCAACGTGTTATTACTTCAAGAGAAACTCCCATCGAAGTTCACTATGAGTCTTTGGGTACCTCTCATGAGATTTATGGGCACTATGTAATAGTAAGAAGTATAAAAAAAGAAGTTCTTTGTATATATGTTCGAACCACAGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAAGCTATCCAAGGGTTTTGCCGAGCCTACTCGTATGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

667

Amino Acids

76.61

Weight (kDa)

9.12

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	240 - 358	9.3e-31	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	360 - 407	2.1e-07	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_2	PF00623	417 - 500	2.8e-26	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	505 - 547	6.7e-06	RNA polymerase Rpb1, domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00170
malus_domestica	MD01G1014400.v1.1
pyrus_communis	pycom12397g00020 pycom12397g00340
rosa_chinensis	RchiOBHm_Chr4g0421201
rosa_laevigata	RLG00000000048 RLG00000000088 RLG00000000117 RLG00000000174 RLG00000000232 RLG00000000233 RLG00000000247 RLG00000000283 RLG00000000313 RLG00000000317 RLG00000000339
rosa_multiflora	Rmu_sc0001741.1_g000011
rosa_roxburghii	Rroxscaffold_2G00119090 Rroxscaffold_2G00119100
rosa_rugosa	RorugMtG0001800
rosa_samantha	Rh2AG294100 Rh2AG294200 Rh2DG057700 Rh2DG318000 Rh2DG318100 Rh4CG233400 Rh4CG244200 Rh7BG354800 Rh7CG382200
rosa_wichuraiana	Rw4G006960 Rw4G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1680
AarI	CACCTGC	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	539
Acc65I	GGTACC	2 cut(s)	1844, 1997
AccB1I	GGYRCC	3 cut(s)	1324, 1844, 1997
AccB7I	CCANNNNNTGG	1 cut(s)	1532
AccBSI	CCGCTC	1 cut(s)	1593
AccII	CGCG	1 cut(s)	1158
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	4 cut(s)	132, 779, 1593, 1780
AclWI	GGATC	5 cut(s)	278, 375, 1446, 1532, 1545
AcsI	RAATTY	5 cut(s)	210, 391, 534, 1248, 1645
AcuI	CTGAAG	1 cut(s)	1268
AcyI	GRCGYC	1 cut(s)	1325
AfaI	GTAC	5 cut(s)	945, 1458, 1551, 1846, 1999
AfiI	CCNNNNNNNGG	1 cut(s)	1532
AflIII	ACRYGT	1 cut(s)	1792
AgsI	TTSAA	3 cut(s)	80, 1043, 1806
AjnI	CCWGG	3 cut(s)	470, 505, 910
AluBI	AGCT	9 cut(s)	52, 317, 416, 828, 953, 1174, 1529, 1730, 1964
AluI	AGCT	9 cut(s)	52, 317, 416, 828, 953, 1174, 1529, 1730, 1964
Alw21I	GWGCWC	1 cut(s)	830
Alw26I	GTCTC	3 cut(s)	784, 1061, 1527
AlwI	GGATC	5 cut(s)	278, 375, 1446, 1532, 1545
Ama87I	CYCGRG	1 cut(s)	782
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	2 cut(s)	407, 1485
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	5 cut(s)	210, 391, 534, 1248, 1645
ArsI	GACNNNNNNTTYG	4 cut(s)	53, 85, 1371, 1403
AseI	ATTAAT	1 cut(s)	837
Asp700I	GAANNNNTTC	2 cut(s)	84, 1281
Asp718I	GGTACC	2 cut(s)	1844, 1997
AspA2I	CCTAGG	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	1327
AspS9I	GGNCC	5 cut(s)	95, 408, 639, 1121, 1486
AsuHPI	GGTGA	1 cut(s)	311
AsuII	TTCGAA	5 cut(s)	453, 523, 727, 1649, 1918
AvaI	CYCGRG	1 cut(s)	782
AvaII	GGWCC	3 cut(s)	95, 639, 1121
AvrII	CCTAGG	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	1869
BamHI	GGATCC	1 cut(s)	1537
BanI	GGYRCC	3 cut(s)	1324, 1844, 1997
BanII	GRGCYC	2 cut(s)	830, 1578
BbsI	GAAGAC	1 cut(s)	682
Bbv12I	GWGCWC	1 cut(s)	830
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	6 cut(s)	245, 353, 745, 803, 1427, 1826
BcgI	CGANNNNNNTGC	4 cut(s)	707, 741, 1069, 1103
BciT130I	CCWGG	3 cut(s)	472, 507, 912
BciVI	GTATCC	1 cut(s)	952
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	3 cut(s)	784, 1061, 1527
BfaI	CTAG	6 cut(s)	153, 215, 221, 276, 405, 1784
BfmI	CTRYAG	1 cut(s)	847
BfoI	RGCGCY	1 cut(s)	1328
BfuAI	ACCTGC	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	952
BglII	AGATCT	1 cut(s)	902
BisI	GCNGC	2 cut(s)	315, 1781
BlnI	CCTAGG	1 cut(s)	220
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	2 cut(s)	316, 1782
Bme1390I	CCNGG	3 cut(s)	472, 507, 912
Bme18I	GGWCC	3 cut(s)	95, 639, 1121
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	5 cut(s)	95, 408, 639, 1121, 1486
BmiI	GGNNCC	7 cut(s)	96, 640, 1326, 1539, 1772, 1846, 1999
BmrFI	CCNGG	3 cut(s)	472, 507, 912
BmsI	GCATC	5 cut(s)	29, 119, 492, 1312, 1708
BpiI	GAAGAC	1 cut(s)	682
BpmI	CTGGAG	3 cut(s)	489, 564, 1509
Bpu1102I	GCTNAGC	1 cut(s)	714
Bpu14I	TTCGAA	5 cut(s)	453, 523, 727, 1649, 1918
BpuEI	CTTGAG	1 cut(s)	1461
Bsa29I	ATCGAT	2 cut(s)	882, 1141
BsaBI	GATNNNNATC	1 cut(s)	1437
BsaHI	GRCGYC	1 cut(s)	1325
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	5 cut(s)	220, 642, 982, 1603, 1969
BsaWI	WCCGGW	2 cut(s)	97, 1773
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 906, 936
Bsc4I	CCNNNNNNNGG	1 cut(s)	1532
Bse118I	RCCGGY	1 cut(s)	1264
Bse1I	ACTGG	2 cut(s)	547, 770
Bse8I	GATNNNNATC	1 cut(s)	1437
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	472, 507, 912
BseCI	ATCGAT	2 cut(s)	882, 1141
BseDI	CCNNGG	5 cut(s)	220, 642, 982, 1603, 1969
BseGI	GGATG	4 cut(s)	483, 756, 1303, 1396
BseJI	GATNNNNATC	1 cut(s)	1437
BseLI	CCNNNNNNNGG	1 cut(s)	1532
BseNI	ACTGG	2 cut(s)	547, 770
BseSI	GKGCMC	1 cut(s)	1869
BseXI	GCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	1158
BshFI	GGCC	2 cut(s)	409, 1487
BshNI	GGYRCC	3 cut(s)	1324, 1844, 1997
BshVI	ATCGAT	2 cut(s)	882, 1141
BsiHKAI	GWGCWC	1 cut(s)	830
BsiHKCI	CYCGRG	1 cut(s)	782
BsiSI	CCGG	3 cut(s)	98, 1265, 1774
BslFI	GGGAC	2 cut(s)	178, 1013
BslI	CCNNNNNNNGG	1 cut(s)	1532
BsmAI	GTCTC	3 cut(s)	784, 1061, 1527
BsmFI	GGGAC	2 cut(s)	178, 1013
BsnI	GGCC	2 cut(s)	409, 1487
Bso31I	GGTCTC	1 cut(s)	784
BsoBI	CYCGRG	1 cut(s)	782
Bsp119I	TTCGAA	5 cut(s)	453, 523, 727, 1649, 1918
Bsp1286I	GDGCHC	3 cut(s)	830, 1578, 1869
Bsp13I	TCCGGA	1 cut(s)	97
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp68I	TCGCGA	1 cut(s)	1158
BspACI	CCGC	4 cut(s)	132, 779, 1593, 1780
BspANI	GGCC	2 cut(s)	409, 1487
BspDI	ATCGAT	2 cut(s)	882, 1141
BspEI	TCCGGA	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	1158
BspHI	TCATGA	1 cut(s)	1852
BspLI	GGNNCC	7 cut(s)	96, 640, 1326, 1539, 1772, 1846, 1999
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	5 cut(s)	278, 375, 1446, 1532, 1545
BspT104I	TTCGAA	5 cut(s)	453, 523, 727, 1649, 1918
BspT107I	GGYRCC	3 cut(s)	1324, 1844, 1997
BspTNI	GGTCTC	1 cut(s)	784
BsrBI	CCGCTC	1 cut(s)	1593
BsrFI	RCCGGY	1 cut(s)	1264
BsrI	ACTGG	2 cut(s)	547, 770
BssAI	RCCGGY	1 cut(s)	1264
BssECI	CCNNGG	5 cut(s)	220, 642, 982, 1603, 1969
BssNI	GRCGYC	1 cut(s)	1325
BssT1I	CCWWGG	2 cut(s)	220, 1969
Bst2UI	CCWGG	3 cut(s)	472, 507, 912
Bst4CI	ACNGT	2 cut(s)	1004, 1927
Bst6I	CTCTTC	1 cut(s)	847
BstACI	GRCGYC	1 cut(s)	1325
BstAPI	GCANNNNNTGC	2 cut(s)	17, 334
BstBI	TTCGAA	5 cut(s)	453, 523, 727, 1649, 1918
BstDEI	CTNAG	4 cut(s)	72, 125, 714, 1239
BstDSI	CCRYGG	2 cut(s)	642, 982
BstF5I	GGATG	4 cut(s)	483, 756, 1303, 1396
BstFNI	CGCG	1 cut(s)	1158
BstH2I	RGCGCY	1 cut(s)	1328
BstHHI	GCGC	1 cut(s)	1327
BstMAI	GTCTC	3 cut(s)	784, 1061, 1527
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 49, 334, 1333, 1573, 1599, 1727, 1777
BstNI	CCWGG	3 cut(s)	472, 507, 912
BstNSI	RCATGY	1 cut(s)	1385
BstSCI	CCNGG	3 cut(s)	470, 505, 910
BstSFI	CTRYAG	1 cut(s)	847
BstSLI	GKGCMC	1 cut(s)	1869
BstUI	CGCG	1 cut(s)	1158
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	3 cut(s)	380, 902, 1537
BstYI	RGATCY	3 cut(s)	380, 902, 1537
Bsu15I	ATCGAT	2 cut(s)	882, 1141
BsuI	GTATCC	1 cut(s)	952
BsuRI	GGCC	2 cut(s)	409, 1487
BsuTUI	ATCGAT	2 cut(s)	882, 1141
BtgI	CCRYGG	2 cut(s)	642, 982
BtsCI	GGATG	4 cut(s)	483, 756, 1303, 1396
BtuMI	TCGCGA	1 cut(s)	1158
BveI	ACCTGC	1 cut(s)	539
CciI	TCATGA	1 cut(s)	1852
CfoI	GCGC	1 cut(s)	1327
Cfr10I	RCCGGY	1 cut(s)	1264
Cfr13I	GGNCC	5 cut(s)	95, 408, 639, 1121, 1486
ClaI	ATCGAT	2 cut(s)	882, 1141
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	5 cut(s)	944, 1457, 1550, 1845, 1998
CviAII	CATG	6 cut(s)	5, 329, 703, 1382, 1454, 1853
CviQI	GTAC	5 cut(s)	944, 1457, 1550, 1845, 1998
DdeI	CTNAG	4 cut(s)	72, 125, 714, 1239
DinI	GGCGCC	1 cut(s)	1326
Eam1104I	CTCTTC	1 cut(s)	847
EarI	CTCTTC	1 cut(s)	847
EciI	GGCGGA	1 cut(s)	768
Ecl136II	GAGCTC	1 cut(s)	828
Eco130I	CCWWGG	2 cut(s)	220, 1969
Eco24I	GRGCYC	2 cut(s)	830, 1578
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	3 cut(s)	95, 639, 1121
Eco53kI	GAGCTC	1 cut(s)	828
Eco57I	CTGAAG	1 cut(s)	1268
Eco88I	CYCGRG	1 cut(s)	782
EcoICRI	GAGCTC	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	1121
EcoRII	CCWGG	3 cut(s)	470, 505, 910
EcoT14I	CCWWGG	2 cut(s)	220, 1969
EcoT22I	ATGCAT	2 cut(s)	6, 330
EcoT38I	GRGCYC	2 cut(s)	830, 1578
EgeI	GGCGCC	1 cut(s)	1326
EheI	GGCGCC	1 cut(s)	1326
ErhI	CCWWGG	2 cut(s)	220, 1969
FaeI	CATG	6 cut(s)	8, 332, 706, 1385, 1457, 1856
FalI	AAGNNNNNCTT	4 cut(s)	1551, 1583, 1887, 1919
FaqI	GGGAC	2 cut(s)	178, 1013
FatI	CATG	6 cut(s)	4, 328, 702, 1381, 1453, 1852
FauI	CCCGC	1 cut(s)	1586
FauNDI	CATATG	1 cut(s)	1509
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	315, 1781
FokI	GGATG	4 cut(s)	470, 763, 1290, 1383
FriOI	GRGCYC	2 cut(s)	830, 1578
Fsp4HI	GCNGC	2 cut(s)	315, 1781
FspBI	CTAG	6 cut(s)	153, 215, 221, 276, 405, 1784
GlaI	GCGC	1 cut(s)	1326
GluI	GCNGC	2 cut(s)	315, 1781
GsuI	CTGGAG	3 cut(s)	489, 564, 1509
HaeII	RGCGCY	1 cut(s)	1328
HaeIII	GGCC	2 cut(s)	409, 1487
HapII	CCGG	3 cut(s)	98, 1265, 1774
HgaI	GACGC	1 cut(s)	708
HhaI	GCGC	1 cut(s)	1327
Hin1I	GRCGYC	1 cut(s)	1325
Hin1II	CATG	6 cut(s)	8, 332, 706, 1385, 1457, 1856
Hin6I	GCGC	1 cut(s)	1325
HinP1I	GCGC	1 cut(s)	1325
HinfI	GANTC	6 cut(s)	978, 1069, 1513, 1597, 1746, 1835
HpaII	CCGG	3 cut(s)	98, 1265, 1774
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	8 cut(s)	302, 642, 818, 986, 1018, 1394, 1493, 1828
Hpy188I	TCNGA	5 cut(s)	560, 804, 832, 867, 1033
Hpy8I	GTNNAC	8 cut(s)	302, 642, 818, 986, 1018, 1394, 1493, 1828
HpyAV	CCTTC	4 cut(s)	629, 1037, 1134, 1370
HpyCH4III	ACNGT	2 cut(s)	1004, 1927
HpyCH4IV	ACGT	2 cut(s)	181, 1792
HpyCH4V	TGCA	8 cut(s)	4, 11, 20, 328, 1297, 1336, 1616, 1721
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 49, 334, 1333, 1573, 1599, 1727, 1777
HpyF3I	CTNAG	4 cut(s)	72, 125, 714, 1239
HpySE526I	ACGT	2 cut(s)	181, 1792
Hsp92I	GRCGYC	1 cut(s)	1325
Hsp92II	CATG	6 cut(s)	8, 332, 706, 1385, 1457, 1856
HspAI	GCGC	1 cut(s)	1325
KasI	GGCGCC	1 cut(s)	1324
Kpn2I	TCCGGA	1 cut(s)	97
KpnI	GGTACC	2 cut(s)	1848, 2001
Ksp22I	TGATCA	1 cut(s)	261
LmnI	GCTCC	3 cut(s)	545, 1727, 1776
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	5 cut(s)	29, 119, 492, 1312, 1708
MaeI	CTAG	6 cut(s)	153, 215, 221, 276, 405, 1784
MaeII	ACGT	2 cut(s)	181, 1792
MbiI	CCGCTC	1 cut(s)	1593
MboII	GAAGA	8 cut(s)	57, 644, 671, 687, 767, 864, 1068, 1970
MfeI	CAATTG	1 cut(s)	1722
MflI	RGATCY	3 cut(s)	380, 902, 1537
MhlI	GDGCHC	3 cut(s)	830, 1578, 1869
Mly113I	GGCGCC	1 cut(s)	1325
MlyI	GAGTC	3 cut(s)	1063, 1755, 1844
MmeI	TCCRAC	1 cut(s)	652
Mph1103I	ATGCAT	2 cut(s)	6, 330
MroI	TCCGGA	1 cut(s)	97
MroXI	GAANNNNTTC	2 cut(s)	84, 1281
MseI	TTAA	5 cut(s)	837, 890, 1202, 1419, 1586
MslI	CAYNNNNRTG	2 cut(s)	246, 1143
MspI	CCGG	3 cut(s)	98, 1265, 1774
MspR9I	CCNGG	3 cut(s)	472, 507, 912
MunI	CAATTG	1 cut(s)	1722
MvaI	CCWGG	3 cut(s)	472, 507, 912
MvnI	CGCG	1 cut(s)	1158
MwoI	GCNNNNNNNGC	8 cut(s)	17, 49, 334, 1333, 1573, 1599, 1727, 1777
NarI	GGCGCC	1 cut(s)	1325
NdeI	CATATG	1 cut(s)	1509
NlaIII	CATG	6 cut(s)	8, 332, 706, 1385, 1457, 1856
NlaIV	GGNNCC	7 cut(s)	96, 640, 1326, 1539, 1772, 1846, 1999
NmeAIII	GCCGAG	1 cut(s)	1628
NruI	TCGCGA	1 cut(s)	1158
NsiI	ATGCAT	2 cut(s)	6, 330
NspI	RCATGY	1 cut(s)	1385
NspV	TTCGAA	5 cut(s)	453, 523, 727, 1649, 1918
PagI	TCATGA	1 cut(s)	1852
PaqCI	CACCTGC	1 cut(s)	539
PdmI	GAANNNNTTC	2 cut(s)	84, 1281
PfeI	GAWTC	3 cut(s)	978, 1513, 1597
PflMI	CCANNNNNTGG	1 cut(s)	1532
PfoI	TCCNGGA	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	316, 1782
PleI	GAGTC	3 cut(s)	1063, 1754, 1843
PluTI	GGCGCC	1 cut(s)	1328
PpsI	GAGTC	3 cut(s)	1063, 1754, 1843
PpuMI	RGGWCCY	1 cut(s)	1121
PshBI	ATTAAT	1 cut(s)	837
PsiI	TTATAA	1 cut(s)	1680
Psp124BI	GAGCTC	1 cut(s)	830
Psp5II	RGGWCCY	1 cut(s)	1121
Psp6I	CCWGG	3 cut(s)	470, 505, 910
PspGI	CCWGG	3 cut(s)	470, 505, 910
PspN4I	GGNNCC	7 cut(s)	96, 640, 1326, 1539, 1772, 1846, 1999
PspPI	GGNCC	5 cut(s)	95, 408, 639, 1121, 1486
PspPPI	RGGWCCY	1 cut(s)	1121
PsuI	RGATCY	3 cut(s)	380, 902, 1537
RruI	TCGCGA	1 cut(s)	1158
RsaI	GTAC	5 cut(s)	945, 1458, 1551, 1846, 1999
RsaNI	GTAC	5 cut(s)	944, 1457, 1550, 1845, 1998
RseI	CAYNNNNRTG	2 cut(s)	246, 1143
SacI	GAGCTC	1 cut(s)	830
SaqAI	TTAA	5 cut(s)	837, 890, 1202, 1419, 1586
SatI	GCNGC	2 cut(s)	315, 1781
Sau96I	GGNCC	5 cut(s)	95, 408, 639, 1121, 1486
SchI	GAGTC	3 cut(s)	1063, 1755, 1844
ScrFI	CCNGG	3 cut(s)	472, 507, 912
SduI	GDGCHC	3 cut(s)	830, 1578, 1869
SfaNI	GCATC	5 cut(s)	29, 119, 492, 1312, 1708
SfcI	CTRYAG	1 cut(s)	847
SfoI	GGCGCC	1 cut(s)	1326
SfuI	TTCGAA	5 cut(s)	453, 523, 727, 1649, 1918
SinI	GGWCC	3 cut(s)	95, 639, 1121
SmiMI	CAYNNNNRTG	2 cut(s)	246, 1143
SmlI	CTYRAG	1 cut(s)	1476
SmoI	CTYRAG	1 cut(s)	1476
SsiI	CCGC	4 cut(s)	132, 779, 1593, 1780
SspDI	GGCGCC	1 cut(s)	1324
SspMI	CTAG	6 cut(s)	153, 215, 221, 276, 405, 1784
SstI	GAGCTC	1 cut(s)	830
StyD4I	CCNGG	3 cut(s)	470, 505, 910
StyI	CCWWGG	2 cut(s)	220, 1969
TaaI	ACNGT	2 cut(s)	1004, 1927
TaiI	ACGT	2 cut(s)	184, 1795
TauI	GCSGC	1 cut(s)	1783
TfiI	GAWTC	3 cut(s)	978, 1513, 1597
Tru1I	TTAA	5 cut(s)	837, 890, 1202, 1419, 1586
Tru9I	TTAA	5 cut(s)	837, 890, 1202, 1419, 1586
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	8 cut(s)	191, 438, 666, 855, 1122, 1442, 1526, 1671
TspGWI	ACGGA	2 cut(s)	971, 1537
Van91I	CCANNNNNTGG	1 cut(s)	1532
VpaK11BI	GGWCC	3 cut(s)	95, 639, 1121
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	5 cut(s)	210, 391, 534, 1248, 1645
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	1 cut(s)	1385
XmaJI	CCTAGG	1 cut(s)	220
XmnI	GAANNNNTTC	2 cut(s)	84, 1281
XspI	CTAG	6 cut(s)	153, 215, 221, 276, 405, 1784
Zsp2I	ATGCAT	2 cut(s)	6, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.