RLG00000000247

DNA-directed 5'-3' RNA polymerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004622
Physical Location & Seq
Forward (+)
181300 .. 185524
4225 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000247

Sequence Viewer

Length: 2898 bp
ATGGGCTACATCAAACTGGCATGCCCAGTAACCCACATTCAGAATGAGAAACTGTCATCCCATTCAATCAAATTGGGATGCCCCGGATCTGACATGTCTCTTAGTAGGAGTAAGAATAGCATGAAACTCAGAAGCTTCGATACATTTCGAAATCGAGAAATTTCTACTGGAGCAGGTGCTATCCGAGAACAATTAGCCGATCTGGATTTGAGAATTATTATAGATTATTCGCTGTTAGAATGGAAAGAATTGGGGGAAGAAGGGTCCACGGGGAATGAATGGGAAGATCGAAAGGTTGGAAGACGAAAGGATTTTTTGGTTAGACGCATGGAGTTGGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCGCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTATCGATCTCTTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGGATACACTTCTTGATAATGGAATCCGTGGACAACCAATGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGAAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCGGGGCGTTCTGTCATTGTTGTAGGTCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTTTAATTAGACAGCATTTTGCCTCGAATATAGGAGTGGCTAAGAGTAAAATTCGGGAAAAAGAGCCGGTTGTATGGGAAATACTTCAGGAAGTTATGCAAGGGCATCCCGTATTGCTGAATAGGGCGCCTACTCTGCATAGATTAGGCATACAGGCGTTCCAGCCCATTTTAGTAGAAGGACATGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTTAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCTATTTCCGTACCAACCCAAGATATGCTTATCGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATAGGTATAATCCATATAATCGCACAAATTCGAAAAATGAAAGAATTGCCGATAATAATTCTAAATATACGAAAGAACCTTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGGCAGAAAAGAGTCAATTTAGATAGCCCCTTGTGGCTCCGGTGGCGGCTAGACCAACGTGTTATTACTTCAAGAGAAACTCCCATCGAAGTTCACTATGAGTCTTTGGGTACCTCTCATGAGATTTATGGACACTATGTAATAGTAAGAAGTATAAAAAAAGAAGTTCTTTGTATATATGTTCGAACCACAGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAAGCTATCCAAGGGTTTTGCCGAGCCTACTCTTCAGCTAGGACCACAGTTCCTGAATTTCTATGCGAATCAAGATCGAGAAAAGGAAGTTTTCCAATCACTGACTCAAACCCATTGTCGAACCCCACTCAGCGGAATAGGGAGGTACTTATGGCAGAACGGGCCAGTCTGGTTTTTCACAATAAAGTGATCGATGGAACCGCTATTAAACGACTTATTAGTAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTAGATCAAGTAAAGACTCTGGGGTTTCGACAAGCCACCGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAGGGGTGGCTAGTCCAAGATGCCGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGTAATGTACACGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAGTCCTAATTTTAGGATGACGGACCCTTTTAATCCAGTCCATATGATGTCTTTTTCGGGAGCTAGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGGTTAATGTCGGATCCACAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGTGAAGGGCTGTCTTTAACAGAATATATCATTTCTTGTTACGGAGCCCGCAAGGGCGTTGTGGATACTGCTGTACGAACGTCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACAGATTGTGGCACCGTCCGAGGTATTTCTGTGAGTCCTCGAAATGGGATGATGCCGGAAAGAATTTTTATCCAAACATTGATTGGTCGTGTATTAGCAGACGATATATATATAGGACCGCGATGCATTGCCGTTCGAAATAAAGATATTGGAATTGGACTTGTCAATCGATTCATAACCTTTCAAACACAACCAATACCTATTCGAACCCCCTTTACTTGTAAGAGTACGTCTTGGATCTGCCGATTATGTTATGGCCGGAGCCCTACTCATGGCGACCTGGTCGAGTTGGGGGAAGCTGTAGGCATTATTGCGGGTCAATCTATTGGAGAACCGGGCACTCAATTAACATTAAGAACTTTTCATACCGGTGGAGTATTCACAGGGGGTACTGCAGAACATGAGGTTCGTGCAGATTCAGTGCAGTCCCCCCTTCACTCCACAAGGATCAAGATCAAACGAACGGTCATTCTCTTTCGGTTGAAGGACGATATTTTTCTAGTCTTTCAGTAA

Protein Analysis

966

Amino Acids

109.01

Weight (kDa)

9.09

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb1_1 PF04997 1 - 233 3.7e-34 RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2 PF00623 235 - 282 3.4e-07 RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_2 PF00623 293 - 375 4.6e-26 RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3 PF04983 380 - 640 3.3e-14 RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4 PF05000 671 - 735 5.9e-14 RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5 PF04998 750 - 936 2.5e-39 RNA polymerase Rpb1, domain 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 1469
AccB1I GGYRCC 3 cut(s) 949, 1469, 2396
AccB7I CCANNNNNTGG 1 cut(s) 1157
AccBSI CCGCTC 1 cut(s) 1218
AccII CGCG 3 cut(s) 783, 2012, 2506
AclWI GGATC 8 cut(s) 94, 1071, 1157, 1170, 2192, 2205, 2630, 2840
AcoI YGGCCR 1 cut(s) 2641
AcsI RAATTY 5 cut(s) 159, 873, 1270, 1640, 2448
AcuI CTGAAG 2 cut(s) 893, 1602
AcyI GRCGYC 1 cut(s) 950
AfiI CCNNNNNNNGG 5 cut(s) 1157, 1716, 1937, 2429, 2657
AflIII ACRYGT 2 cut(s) 93, 1417
AgeI ACCGGT 1 cut(s) 2753
AgsI TTSAA 8 cut(s) 66, 668, 1431, 2231, 2357, 2366, 2570, 2869
AjnI CCWGG 2 cut(s) 535, 2664
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 4 cut(s) 102, 409, 686, 1152
AlwI GGATC 8 cut(s) 94, 1071, 1157, 1170, 2192, 2205, 2630, 2840
AlwNI CAGNNNCTG 1 cut(s) 1637
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 3 cut(s) 1110, 1746, 2641
ApoI RAATTY 5 cut(s) 159, 873, 1270, 1640, 2448
ArsI GACNNNNNNTTYG 6 cut(s) 996, 1028, 1685, 1717, 2835, 2867
AseI ATTAAT 2 cut(s) 462, 1811
AsiGI ACCGGT 1 cut(s) 2753
Asp700I GAANNNNTTC 2 cut(s) 906, 2361
Asp718I GGTACC 1 cut(s) 1469
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 7 cut(s) 264, 746, 1111, 1626, 1746, 2101, 2501
AsuC2I CCSGG 2 cut(s) 84, 2721
AsuII TTCGAA 6 cut(s) 148, 352, 1274, 1543, 2521, 2590
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 5 cut(s) 264, 746, 1626, 2101, 2501
BaeGI GKGCMC 1 cut(s) 2726
BaeI ACNNNNGTAYC 2 cut(s) 2298, 2331
BamHI GGATCC 2 cut(s) 1162, 2197
BanI GGYRCC 3 cut(s) 949, 1469, 2396
BanII GRGCYC 4 cut(s) 455, 1203, 2290, 2651
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 455
BccI CCATC 6 cut(s) 370, 428, 1052, 1451, 1772, 1998
BceAI ACGGC 1 cut(s) 2501
BcgI CGANNNNNNTGC 4 cut(s) 332, 366, 694, 728
BciT130I CCWGG 2 cut(s) 537, 2666
BciVI GTATCC 2 cut(s) 577, 2299
BcnI CCSGG 2 cut(s) 84, 2721
BcoDI GTCTC 4 cut(s) 102, 409, 686, 1152
BfaI CTAG 6 cut(s) 1409, 1623, 1850, 1946, 2142, 2885
BfmI CTRYAG 3 cut(s) 472, 2685, 2778
BfoI RGCGCY 1 cut(s) 953
BfuAI ACCTGC 1 cut(s) 164
BfuI GTATCC 2 cut(s) 577, 2299
BglII AGATCT 1 cut(s) 527
BisI GCNGC 1 cut(s) 1406
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 1407
Bme1390I CCNGG 4 cut(s) 84, 537, 2666, 2721
Bme18I GGWCC 5 cut(s) 264, 746, 1626, 2101, 2501
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 7 cut(s) 264, 746, 1111, 1626, 1746, 2101, 2501
BmrFI CCNGG 4 cut(s) 84, 537, 2666, 2721
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 8 cut(s) 68, 937, 1333, 1945, 2162, 2317, 2427, 2498
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 307
BplI GAGNNNNNCTC 2 cut(s) 2638, 2670
BpmI CTGGAG 2 cut(s) 189, 1134
Bpu1102I GCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 6 cut(s) 148, 352, 1274, 1543, 2521, 2590
BpuEI CTTGAG 2 cut(s) 1086, 2142
BpuMI CCSGG 2 cut(s) 84, 2721
Bsa29I ATCGAT 4 cut(s) 507, 766, 1776, 2554
BsaAI YACGTR 2 cut(s) 2243, 2381
BsaBI GATNNNNATC 2 cut(s) 1062, 2837
BsaHI GRCGYC 1 cut(s) 950
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 6 cut(s) 82, 267, 607, 1228, 1594, 2404
BsaWI WCCGGW 2 cut(s) 1398, 2753
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 5 cut(s) 1157, 1716, 1937, 2429, 2657
Bse118I RCCGGY 2 cut(s) 889, 2753
Bse1I ACTGG 6 cut(s) 21, 26, 172, 395, 1749, 2114
Bse3DI GCAATG 1 cut(s) 2511
Bse8I GATNNNNATC 2 cut(s) 1062, 2837
BseBI CCWGG 2 cut(s) 537, 2666
BseCI ATCGAT 4 cut(s) 507, 766, 1776, 2554
BseDI CCNNGG 6 cut(s) 82, 267, 607, 1228, 1594, 2404
BseJI GATNNNNATC 2 cut(s) 1062, 2837
BseLI CCNNNNNNNGG 5 cut(s) 1157, 1716, 1937, 2429, 2657
BseMI GCAATG 1 cut(s) 2511
BseMII CTCAG 2 cut(s) 142, 1727
BseNI ACTGG 6 cut(s) 21, 26, 172, 395, 1749, 2114
BseSI GKGCMC 1 cut(s) 2726
BsgI GTGCAG 2 cut(s) 2817, 2828
Bsh1236I CGCG 3 cut(s) 783, 2012, 2506
BshFI GGCC 3 cut(s) 1112, 1748, 2643
BshNI GGYRCC 3 cut(s) 949, 1469, 2396
BshTI ACCGGT 1 cut(s) 2753
BshVI ATCGAT 4 cut(s) 507, 766, 1776, 2554
BsiHKAI GWGCWC 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 7 cut(s) 84, 890, 1399, 2441, 2644, 2720, 2754
BslFI GGGAC 2 cut(s) 638, 2797
BslI CCNNNNNNNGG 5 cut(s) 1157, 1716, 1937, 2429, 2657
BsmAI GTCTC 4 cut(s) 102, 409, 686, 1152
BsmFI GGGAC 2 cut(s) 638, 2797
BsnI GGCC 3 cut(s) 1112, 1748, 2643
Bso31I GGTCTC 1 cut(s) 409
BsoBI CYCGRG 1 cut(s) 407
Bsp119I TTCGAA 6 cut(s) 148, 352, 1274, 1543, 2521, 2590
Bsp1286I GDGCHC 5 cut(s) 455, 1203, 2290, 2651, 2726
Bsp1407I TGTACA 1 cut(s) 2005
Bsp1720I GCTNAGC 1 cut(s) 339
Bsp68I TCGCGA 1 cut(s) 783
BspANI GGCC 3 cut(s) 1112, 1748, 2643
BspCNI CTCAG 2 cut(s) 141, 1726
BspDI ATCGAT 4 cut(s) 507, 766, 1776, 2554
BspFNI CGCG 3 cut(s) 783, 2012, 2506
BspHI TCATGA 1 cut(s) 1477
BspMAI CTGCAG 1 cut(s) 2782
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 8 cut(s) 94, 1071, 1157, 1170, 2192, 2205, 2630, 2840
BspT104I TTCGAA 6 cut(s) 148, 352, 1274, 1543, 2521, 2590
BspT107I GGYRCC 3 cut(s) 949, 1469, 2396
BspTNI GGTCTC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 1218
BsrDI GCAATG 1 cut(s) 2511
BsrFI RCCGGY 2 cut(s) 889, 2753
BsrGI TGTACA 1 cut(s) 2005
BsrI ACTGG 6 cut(s) 21, 26, 172, 395, 1749, 2114
BssAI RCCGGY 2 cut(s) 889, 2753
BssECI CCNNGG 6 cut(s) 82, 267, 607, 1228, 1594, 2404
BssNI GRCGYC 1 cut(s) 950
BssT1I CCWWGG 1 cut(s) 1594
Bst2UI CCWGG 2 cut(s) 537, 2666
Bst4CI ACNGT 6 cut(s) 54, 629, 1552, 1633, 2401, 2851
Bst6I CTCTTC 2 cut(s) 472, 1621
BstACI GRCGYC 1 cut(s) 950
BstAUI TGTACA 1 cut(s) 2005
BstBAI YACGTR 2 cut(s) 2243, 2381
BstBI TTCGAA 6 cut(s) 148, 352, 1274, 1543, 2521, 2590
BstC8I GCNNGC 2 cut(s) 22, 2290
BstDEI CTNAG 6 cut(s) 101, 128, 339, 864, 1713, 1935
BstDSI CCRYGG 2 cut(s) 267, 607
BstFNI CGCG 3 cut(s) 783, 2012, 2506
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 1 cut(s) 952
BstMAI GTCTC 4 cut(s) 102, 409, 686, 1152
BstMWI GCNNNNNNNGC 6 cut(s) 958, 1198, 1224, 1352, 1402, 1745
BstNI CCWGG 2 cut(s) 537, 2666
BstNSI RCATGY 3 cut(s) 24, 97, 1010
BstSCI CCNGG 4 cut(s) 82, 535, 2664, 2719
BstSFI CTRYAG 3 cut(s) 472, 2685, 2778
BstSLI GKGCMC 1 cut(s) 2726
BstSNI TACGTA 1 cut(s) 2381
BstUI CGCG 3 cut(s) 783, 2012, 2506
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 5 cut(s) 86, 527, 1162, 2197, 2622
BstXI CCANNNNNNTGG 1 cut(s) 1997
BstYI RGATCY 5 cut(s) 86, 527, 1162, 2197, 2622
Bsu15I ATCGAT 4 cut(s) 507, 766, 1776, 2554
BsuI GTATCC 2 cut(s) 577, 2299
BsuRI GGCC 3 cut(s) 1112, 1748, 2643
BsuTUI ATCGAT 4 cut(s) 507, 766, 1776, 2554
BtgI CCRYGG 2 cut(s) 267, 607
BtgZI GCGATG 1 cut(s) 2521
BtsIMutI CAGTG 2 cut(s) 1683, 2811
BtuMI TCGCGA 1 cut(s) 783
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 22, 2290
CaiI CAGNNNCTG 1 cut(s) 1637
CciI TCATGA 1 cut(s) 1477
CfoI GCGC 1 cut(s) 952
Cfr10I RCCGGY 2 cut(s) 889, 2753
Cfr13I GGNCC 7 cut(s) 264, 746, 1111, 1626, 1746, 2101, 2501
ClaI ATCGAT 4 cut(s) 507, 766, 1776, 2554
CseI GACGC 1 cut(s) 333
CsiI ACCWGGT 1 cut(s) 2664
CspAI ACCGGT 1 cut(s) 2753
CviAII CATG 9 cut(s) 21, 94, 121, 328, 1007, 1079, 1478, 2657, 2786
DdeI CTNAG 6 cut(s) 101, 128, 339, 864, 1713, 1935
DinI GGCGCC 1 cut(s) 951
EaeI YGGCCR 1 cut(s) 2641
Eam1104I CTCTTC 2 cut(s) 472, 1621
EarI CTCTTC 2 cut(s) 472, 1621
EciI GGCGGA 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 453
Eco105I TACGTA 1 cut(s) 2381
Eco130I CCWWGG 1 cut(s) 1594
Eco24I GRGCYC 4 cut(s) 455, 1203, 2290, 2651
Eco31I GGTCTC 1 cut(s) 409
Eco32I GATATC 1 cut(s) 2336
Eco47I GGWCC 5 cut(s) 264, 746, 1626, 2101, 2501
Eco53kI GAGCTC 1 cut(s) 453
Eco57I CTGAAG 2 cut(s) 893, 1602
Eco88I CYCGRG 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 746
EcoRII CCWGG 2 cut(s) 535, 2664
EcoRV GATATC 1 cut(s) 2336
EcoT14I CCWWGG 1 cut(s) 1594
EcoT22I ATGCAT 2 cut(s) 2155, 2513
EcoT38I GRGCYC 4 cut(s) 455, 1203, 2290, 2651
EgeI GGCGCC 1 cut(s) 951
EheI GGCGCC 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 1594
FaeI CATG 9 cut(s) 24, 97, 124, 331, 1010, 1082, 1481, 2660, 2789
FalI AAGNNNNNCTT 4 cut(s) 1176, 1208, 1512, 1544
FaqI GGGAC 2 cut(s) 638, 2797
FatI CATG 9 cut(s) 20, 93, 120, 327, 1006, 1078, 1477, 2656, 2785
FauI CCCGC 3 cut(s) 1211, 2297, 2692
FauNDI CATATG 2 cut(s) 1134, 2121
Fnu4HI GCNGC 1 cut(s) 1406
FriOI GRGCYC 4 cut(s) 455, 1203, 2290, 2651
Fsp4HI GCNGC 1 cut(s) 1406
FspBI CTAG 6 cut(s) 1409, 1623, 1850, 1946, 2142, 2885
GlaI GCGC 1 cut(s) 951
GluI GCNGC 1 cut(s) 1406
GsuI CTGGAG 2 cut(s) 189, 1134
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 3 cut(s) 1112, 1748, 2643
HapII CCGG 7 cut(s) 84, 890, 1399, 2441, 2644, 2720, 2754
HgaI GACGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 952
Hin1I GRCGYC 1 cut(s) 950
Hin1II CATG 9 cut(s) 24, 97, 124, 331, 1010, 1082, 1481, 2660, 2789
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HindIII AAGCTT 1 cut(s) 133
HpaII CCGG 7 cut(s) 84, 890, 1399, 2441, 2644, 2720, 2754
Hpy166II GTNNAC 9 cut(s) 267, 443, 611, 643, 1019, 1118, 1453, 2008, 2164
Hpy8I GTNNAC 9 cut(s) 267, 443, 611, 643, 1019, 1118, 1453, 2008, 2164
Hpy99I CGWCG 1 cut(s) 2326
HpyAV CCTTC 8 cut(s) 254, 662, 759, 995, 1941, 2240, 2828, 2863
HpyCH4III ACNGT 6 cut(s) 54, 629, 1552, 1633, 2401, 2851
HpyCH4IV ACGT 5 cut(s) 1417, 2242, 2321, 2380, 2615
HpyCH4V TGCA 9 cut(s) 922, 961, 1241, 1346, 2153, 2511, 2780, 2798, 2809
HpyF10VI GCNNNNNNNGC 6 cut(s) 958, 1198, 1224, 1352, 1402, 1745
HpyF3I CTNAG 6 cut(s) 101, 128, 339, 864, 1713, 1935
HpySE526I ACGT 5 cut(s) 1417, 2242, 2321, 2380, 2615
Hsp92I GRCGYC 1 cut(s) 950
Hsp92II CATG 9 cut(s) 24, 97, 124, 331, 1010, 1082, 1481, 2660, 2789
HspAI GCGC 1 cut(s) 950
KasI GGCGCC 1 cut(s) 949
KpnI GGTACC 1 cut(s) 1473
LmnI GCTCC 6 cut(s) 170, 1352, 1401, 2138, 2285, 2646
LweI GCATC 8 cut(s) 68, 937, 1333, 1945, 2162, 2317, 2427, 2498
MabI ACCWGGT 1 cut(s) 2664
MaeI CTAG 6 cut(s) 1409, 1623, 1850, 1946, 2142, 2885
MaeII ACGT 5 cut(s) 1417, 2242, 2321, 2380, 2615
MaeIII GTNAC 2 cut(s) 28, 2279
MbiI CCGCTC 1 cut(s) 1218
MboII GAAGA 8 cut(s) 269, 296, 312, 392, 489, 693, 1595, 1608
MfeI CAATTG 1 cut(s) 1347
MflI RGATCY 5 cut(s) 86, 527, 1162, 2197, 2622
MhlI GDGCHC 5 cut(s) 455, 1203, 2290, 2651, 2726
Mly113I GGCGCC 1 cut(s) 950
MlyI GAGTC 7 cut(s) 688, 1380, 1469, 1682, 1858, 2089, 2428
MmeI TCCRAC 3 cut(s) 277, 2175, 2304
Mph1103I ATGCAT 2 cut(s) 2155, 2513
MroXI GAANNNNTTC 2 cut(s) 906, 2361
MslI CAYNNNNRTG 3 cut(s) 768, 1995, 2754
MspA1I CMGCKG 1 cut(s) 1717
MspI CCGG 7 cut(s) 84, 890, 1399, 2441, 2644, 2720, 2754
MspR9I CCNGG 4 cut(s) 84, 537, 2666, 2721
MunI CAATTG 1 cut(s) 1347
MvaI CCWGG 2 cut(s) 537, 2666
MvnI CGCG 3 cut(s) 783, 2012, 2506
MwoI GCNNNNNNNGC 6 cut(s) 958, 1198, 1224, 1352, 1402, 1745
NarI GGCGCC 1 cut(s) 950
NciI CCSGG 2 cut(s) 84, 2721
NdeI CATATG 2 cut(s) 1134, 2121
NlaIII CATG 9 cut(s) 24, 97, 124, 331, 1010, 1082, 1481, 2660, 2789
NmeAIII GCCGAG 2 cut(s) 1253, 1631
NruI TCGCGA 1 cut(s) 783
NsiI ATGCAT 2 cut(s) 2155, 2513
NspI RCATGY 3 cut(s) 24, 97, 1010
NspV TTCGAA 6 cut(s) 148, 352, 1274, 1543, 2521, 2590
PaeI GCATGC 1 cut(s) 24
PagI TCATGA 1 cut(s) 1477
PaqCI CACCTGC 1 cut(s) 164
PciI ACATGT 1 cut(s) 93
PdmI GAANNNNTTC 2 cut(s) 906, 2361
PfeI GAWTC 6 cut(s) 603, 1138, 1222, 1652, 2556, 2801
PflFI GACNNNGTC 1 cut(s) 2666
PflMI CCANNNNNTGG 1 cut(s) 1157
PinAI ACCGGT 1 cut(s) 2753
PkrI GCNGC 1 cut(s) 1407
PleI GAGTC 7 cut(s) 688, 1379, 1468, 1682, 1858, 2088, 2427
PluTI GGCGCC 1 cut(s) 953
PpsI GAGTC 7 cut(s) 688, 1379, 1468, 1682, 1858, 2088, 2427
Ppu21I YACGTR 2 cut(s) 2243, 2381
PpuMI RGGWCCY 1 cut(s) 746
PscI ACATGT 1 cut(s) 93
PshBI ATTAAT 2 cut(s) 462, 1811
Psp124BI GAGCTC 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 2 cut(s) 535, 2664
PspGI CCWGG 2 cut(s) 535, 2664
PspPI GGNCC 7 cut(s) 264, 746, 1111, 1626, 1746, 2101, 2501
PspPPI RGGWCCY 1 cut(s) 746
PsrI GAACNNNNNNTAC 4 cut(s) 2584, 2616, 2734, 2766
PstI CTGCAG 1 cut(s) 2782
PstNI CAGNNNCTG 1 cut(s) 1637
PsuI RGATCY 5 cut(s) 86, 527, 1162, 2197, 2622
PsyI GACNNNGTC 1 cut(s) 2666
RruI TCGCGA 1 cut(s) 783
RseI CAYNNNNRTG 3 cut(s) 768, 1995, 2754
SacI GAGCTC 1 cut(s) 455
SatI GCNGC 1 cut(s) 1406
Sau96I GGNCC 7 cut(s) 264, 746, 1111, 1626, 1746, 2101, 2501
SchI GAGTC 7 cut(s) 688, 1380, 1469, 1682, 1858, 2089, 2428
ScrFI CCNGG 4 cut(s) 84, 537, 2666, 2721
SduI GDGCHC 5 cut(s) 455, 1203, 2290, 2651, 2726
SexAI ACCWGGT 1 cut(s) 2664
SfaNI GCATC 8 cut(s) 68, 937, 1333, 1945, 2162, 2317, 2427, 2498
SfcI CTRYAG 3 cut(s) 472, 2685, 2778
SfoI GGCGCC 1 cut(s) 951
SfuI TTCGAA 6 cut(s) 148, 352, 1274, 1543, 2521, 2590
SinI GGWCC 5 cut(s) 264, 746, 1626, 2101, 2501
SmiMI CAYNNNNRTG 3 cut(s) 768, 1995, 2754
SmlI CTYRAG 2 cut(s) 1101, 2157
SmoI CTYRAG 2 cut(s) 1101, 2157
SnaBI TACGTA 1 cut(s) 2381
SphI GCATGC 1 cut(s) 24
SspDI GGCGCC 1 cut(s) 949
SspI AATATT 1 cut(s) 2063
SspMI CTAG 6 cut(s) 1409, 1623, 1850, 1946, 2142, 2885
SstI GAGCTC 1 cut(s) 455
StyD4I CCNGG 4 cut(s) 82, 535, 2664, 2719
StyI CCWWGG 1 cut(s) 1594
TaaI ACNGT 6 cut(s) 54, 629, 1552, 1633, 2401, 2851
TaiI ACGT 5 cut(s) 1420, 2245, 2324, 2383, 2618
TatI WGTACW 2 cut(s) 2005, 2161
TauI GCSGC 1 cut(s) 1408
TfiI GAWTC 6 cut(s) 603, 1138, 1222, 1652, 2556, 2801
TscAI CASTG 2 cut(s) 1690, 2811
TspGWI ACGGA 4 cut(s) 596, 1162, 2114, 2298
TspRI CASTG 2 cut(s) 1690, 2811
Tth111I GACNNNGTC 1 cut(s) 2666
Van91I CCANNNNNTGG 1 cut(s) 1157
VpaK11BI GGWCC 5 cut(s) 264, 746, 1626, 2101, 2501
VspI ATTAAT 2 cut(s) 462, 1811
XapI RAATTY 5 cut(s) 159, 873, 1270, 1640, 2448
XceI RCATGY 3 cut(s) 24, 97, 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 2465
XmnI GAANNNNTTC 2 cut(s) 906, 2361
XspI CTAG 6 cut(s) 1409, 1623, 1850, 1946, 2142, 2885
Zsp2I ATGCAT 2 cut(s) 2155, 2513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.