ATCG00480

Produces ATP from ADP in the presence of a proton gradient across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0005978
Physical Location & Seq
Reverse (-)
52660 .. 54156
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG00480.1

Sequence Viewer

Length: 1497 bp
ATGAGAACAAATCCTACTACTTCAAATCCAGAGGTTTCGATACGTGAAAAAAAAAACCTGGGACGTATCGCCCAAATCATTGGTCCGGTACTGGATGTAGCCTTCCCCCCGGGCAAAATGCCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTTCCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAATTTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATAGAATTAGATACAAAATTATCGATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCCCCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTACTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGTGGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGAGTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTTTATGGTCAGATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTCCGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACGAAAAAGGGGTCCATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCACCTGCCACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTTGGCGAGGAACATTATGAAACTGCGCAACAAGTAAAACAAACTTTACAACGTTACAAGGAGCTTCAGGACATTATAGCTATCCTGGGGTTGGATGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTATTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAATTTGATCCTTTCCGGAGAATTTGATTCTCTTCCCGAACAGGCCTTTTACTTAGTGGGTAACATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGTAAATTGAAGAAATGA

Protein Analysis

498

Amino Acids

53.93

Weight (kDa)

5.38

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 23 - 95 2.2e-18 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 152 - 372 2.1e-71 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 378 - 455 1.4e-16 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1024
Acc16I TGCGCA 1 cut(s) 1164
Acc36I ACCTGC 2 cut(s) 997, 1024
AccII CGCG 1 cut(s) 407
AccIII TCCGGA 1 cut(s) 1388
AciI CCGC 8 cut(s) 309, 405, 683, 725, 858, 1011, 1091, 1355
AclI AACGTT 1 cut(s) 1189
AclWI GGATC 5 cut(s) 840, 853, 1091, 1257, 1375
AcsI RAATTY 2 cut(s) 327, 1394
AcuI CTGAAG 1 cut(s) 1187
AfaI GTAC 9 cut(s) 90, 195, 540, 804, 837, 910, 922, 987, 1053
AfiI CCNNNNNNNGG 2 cut(s) 308, 1228
AgsI TTSAA 6 cut(s) 24, 334, 449, 974, 1110, 1489
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 3 cut(s) 57, 727, 1221
AluBI AGCT 8 cut(s) 227, 233, 575, 734, 1070, 1201, 1217, 1448
AluI AGCT 8 cut(s) 227, 233, 575, 734, 1070, 1201, 1217, 1448
Alw21I GWGCWC 2 cut(s) 736, 1273
AlwI GGATC 5 cut(s) 840, 853, 1091, 1257, 1375
Ama87I CYCGRG 1 cut(s) 109
Aor13HI TCCGGA 1 cut(s) 1388
AoxI GGCC 3 cut(s) 477, 696, 1416
ApeKI GCWGC 1 cut(s) 1070
ApoI RAATTY 2 cut(s) 327, 1394
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 941, 973
AseI ATTAAT 2 cut(s) 177, 666
Asp700I GAANNNNTTC 2 cut(s) 877, 940
AspLEI GCGC 2 cut(s) 409, 1165
AspS9I GGNCC 5 cut(s) 83, 365, 478, 697, 957
AsuC2I CCSGG 3 cut(s) 110, 111, 1335
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 3 cut(s) 83, 365, 957
BamHI GGATCC 1 cut(s) 845
BanII GRGCYC 1 cut(s) 736
BarI GAAGNNNNNNTAC 2 cut(s) 862, 894
BauI CACGAG 1 cut(s) 618
Bbv12I GWGCWC 2 cut(s) 736, 1273
BbvI GCAGC 1 cut(s) 1057
BciT130I CCWGG 3 cut(s) 59, 729, 1223
BciVI GTATCC 2 cut(s) 598, 865
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 3 cut(s) 110, 111, 1335
BfaI CTAG 3 cut(s) 320, 701, 1352
BfmI CTRYAG 2 cut(s) 228, 990
BfuAI ACCTGC 2 cut(s) 997, 1024
BfuI GTATCC 2 cut(s) 598, 865
BglII AGATCT 1 cut(s) 469
BisI GCNGC 1 cut(s) 1071
BlsI GCNGC 1 cut(s) 1072
BmcAI AGTACT 1 cut(s) 540
Bme1390I CCNGG 6 cut(s) 59, 110, 111, 729, 1223, 1335
Bme18I GGWCC 3 cut(s) 83, 365, 957
BmeT110I CYCGRG 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 5 cut(s) 83, 365, 478, 697, 957
BmiI GGNNCC 4 cut(s) 348, 480, 847, 958
BmrFI CCNGG 6 cut(s) 59, 110, 111, 729, 1223, 1335
BmsI GCATC 1 cut(s) 1030
BpmI CTGGAG 1 cut(s) 678
BpuMI CCSGG 3 cut(s) 110, 111, 1335
Bsa29I ATCGAT 2 cut(s) 440, 1440
BsaAI YACGTR 1 cut(s) 44
BsaJI CCNNGG 5 cut(s) 58, 108, 109, 849, 1222
BsaWI WCCGGW 2 cut(s) 85, 1388
BsaXI ACNNNNNCTCC 4 cut(s) 373, 403, 1315, 1345
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 1228
Bse1I ACTGG 2 cut(s) 96, 302
Bse3DI GCAATG 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 1388
BseBI CCWGG 3 cut(s) 59, 729, 1223
BseCI ATCGAT 2 cut(s) 440, 1440
BseDI CCNNGG 5 cut(s) 58, 108, 109, 849, 1222
BseGI GGATG 2 cut(s) 100, 1237
BseLI CCNNNNNNNGG 2 cut(s) 308, 1228
BseMI GCAATG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 96, 302
BseXI GCAGC 1 cut(s) 1057
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 3 cut(s) 479, 698, 1418
BshVI ATCGAT 2 cut(s) 440, 1440
BsiHKAI GWGCWC 2 cut(s) 736, 1273
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 4 cut(s) 86, 110, 1334, 1389
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 308, 1228
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 879
BsnI GGCC 3 cut(s) 479, 698, 1418
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 2 cut(s) 736, 1273
Bsp13I TCCGGA 1 cut(s) 1388
Bsp143I GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
BspACI CCGC 8 cut(s) 309, 405, 683, 725, 858, 1011, 1091, 1355
BspANI GGCC 3 cut(s) 479, 698, 1418
BspDI ATCGAT 2 cut(s) 440, 1440
BspEI TCCGGA 1 cut(s) 1388
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 4 cut(s) 348, 480, 847, 958
BspMAI CTGCAG 1 cut(s) 994
BspMI ACCTGC 2 cut(s) 997, 1024
BspPI GGATC 5 cut(s) 840, 853, 1091, 1257, 1375
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 2 cut(s) 96, 302
BssECI CCNNGG 5 cut(s) 58, 108, 109, 849, 1222
BssMI GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
BssSI CACGAG 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 3 cut(s) 59, 729, 1223
Bst4CI ACNGT 3 cut(s) 538, 1051, 1261
Bst6I CTCTTC 2 cut(s) 1239, 1410
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 411, 523
BstDEI CTNAG 4 cut(s) 293, 905, 1426, 1468
BstF5I GGATG 2 cut(s) 100, 1237
BstFNI CGCG 1 cut(s) 407
BstHHI GCGC 2 cut(s) 409, 1165
BstKTI GATC 7 cut(s) 472, 558, 634, 848, 1099, 1252, 1383
BstMBI GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 3 cut(s) 59, 729, 1223
BstSCI CCNGG 6 cut(s) 57, 108, 109, 727, 1221, 1333
BstSFI CTRYAG 2 cut(s) 228, 990
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 1057
BstX2I RGATCY 3 cut(s) 469, 845, 1096
BstXI CCANNNNNNTGG 1 cut(s) 80
BstYI RGATCY 3 cut(s) 469, 845, 1096
Bsu15I ATCGAT 2 cut(s) 440, 1440
BsuI GTATCC 2 cut(s) 598, 865
BsuRI GGCC 3 cut(s) 479, 698, 1418
BsuTUI ATCGAT 2 cut(s) 440, 1440
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 100, 1237
BveI ACCTGC 2 cut(s) 997, 1024
Cac8I GCNNGC 2 cut(s) 411, 523
CfoI GCGC 2 cut(s) 409, 1165
Cfr13I GGNCC 5 cut(s) 83, 365, 478, 697, 957
Cfr9I CCCGGG 1 cut(s) 109
ClaI ATCGAT 2 cut(s) 440, 1440
Csp6I GTAC 9 cut(s) 89, 194, 539, 803, 836, 909, 921, 986, 1052
CspCI CAANNNNNGTGG 2 cut(s) 1009, 1044
CviAII CATG 2 cut(s) 578, 640
CviQI GTAC 9 cut(s) 89, 194, 539, 803, 836, 909, 921, 986, 1052
DdeI CTNAG 4 cut(s) 293, 905, 1426, 1468
DpnI GATC 7 cut(s) 471, 557, 633, 847, 1098, 1251, 1382
DpnII GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
DraI TTTAAA 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 1239, 1410
EarI CTCTTC 2 cut(s) 1239, 1410
EciI GGCGGA 2 cut(s) 324, 847
Ecl136II GAGCTC 1 cut(s) 734
Eco147I AGGCCT 1 cut(s) 1418
Eco24I GRGCYC 1 cut(s) 736
Eco47I GGWCC 3 cut(s) 83, 365, 957
Eco53kI GAGCTC 1 cut(s) 734
Eco57I CTGAAG 1 cut(s) 1187
Eco88I CYCGRG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 734
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 3 cut(s) 57, 727, 1221
EcoT38I GRGCYC 1 cut(s) 736
FaeI CATG 2 cut(s) 581, 643
FalI AAGNNNNNCTT 4 cut(s) 789, 821, 925, 957
FaqI GGGAC 1 cut(s) 75
FatI CATG 2 cut(s) 577, 639
FauI CCCGC 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 555
Fnu4HI GCNGC 1 cut(s) 1071
FokI GGATG 2 cut(s) 107, 1244
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 1 cut(s) 1071
FspBI CTAG 3 cut(s) 320, 701, 1352
FspI TGCGCA 1 cut(s) 1164
GlaI GCGC 2 cut(s) 408, 1164
GluI GCNGC 1 cut(s) 1071
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 3 cut(s) 479, 698, 1418
HapII CCGG 4 cut(s) 86, 110, 1334, 1389
HhaI GCGC 2 cut(s) 409, 1165
Hin1II CATG 2 cut(s) 581, 643
Hin6I GCGC 2 cut(s) 407, 1163
HinP1I GCGC 2 cut(s) 407, 1163
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HinfI GANTC 8 cut(s) 316, 616, 653, 660, 686, 1106, 1134, 1400
HpaII CCGG 4 cut(s) 86, 110, 1334, 1389
Hpy166II GTNNAC 1 cut(s) 1116
Hpy188I TCNGA 5 cut(s) 714, 753, 782, 850, 1243
Hpy188III TCNNGA 9 cut(s) 29, 155, 170, 620, 657, 1059, 1205, 1389, 1409
Hpy8I GTNNAC 1 cut(s) 1116
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 4 cut(s) 112, 617, 888, 1450
HpyCH4III ACNGT 3 cut(s) 538, 1051, 1261
HpyCH4IV ACGT 7 cut(s) 43, 64, 270, 336, 801, 1112, 1189
HpyCH4V TGCA 2 cut(s) 992, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 4 cut(s) 293, 905, 1426, 1468
HpySE526I ACGT 7 cut(s) 43, 64, 270, 336, 801, 1112, 1189
Hsp92II CATG 2 cut(s) 581, 643
HspAI GCGC 2 cut(s) 407, 1163
Kpn2I TCCGGA 1 cut(s) 1388
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
LmnI GCTCC 3 cut(s) 311, 731, 1198
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 1 cut(s) 1030
MaeI CTAG 3 cut(s) 320, 701, 1352
MaeII ACGT 7 cut(s) 43, 64, 270, 336, 801, 1112, 1189
MaeIII GTNAC 3 cut(s) 181, 1190, 1433
MalI GATC 7 cut(s) 471, 557, 633, 847, 1098, 1251, 1382
MboI GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
MboII GAAGA 3 cut(s) 817, 1256, 1397
MflI RGATCY 3 cut(s) 469, 845, 1096
MhlI GDGCHC 2 cut(s) 736, 1273
MlyI GAGTC 3 cut(s) 310, 610, 669
MmeI TCCRAC 1 cut(s) 1209
MroI TCCGGA 1 cut(s) 1388
MroXI GAANNNNTTC 2 cut(s) 877, 940
MseI TTAA 9 cut(s) 147, 177, 254, 459, 666, 761, 789, 1256, 1374
MslI CAYNNNNRTG 3 cut(s) 582, 644, 1038
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 4 cut(s) 86, 110, 1334, 1389
MspR9I CCNGG 6 cut(s) 59, 110, 111, 729, 1223, 1335
Mva1269I GAATGC 1 cut(s) 879
MvaI CCWGG 3 cut(s) 59, 729, 1223
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 3 cut(s) 110, 111, 1335
NdeII GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
NlaIII CATG 2 cut(s) 581, 643
NlaIV GGNNCC 4 cut(s) 348, 480, 847, 958
NmuCI GTSAC 1 cut(s) 181
NsbI TGCGCA 1 cut(s) 1164
PaqCI CACCTGC 1 cut(s) 1024
PceI AGGCCT 1 cut(s) 1418
PctI GAATGC 1 cut(s) 879
PdmI GAANNNNTTC 2 cut(s) 877, 940
PfeI GAWTC 5 cut(s) 653, 686, 1106, 1134, 1400
PfoI TCCNGGA 1 cut(s) 1333
PkrI GCNGC 1 cut(s) 1072
PleI GAGTC 3 cut(s) 310, 610, 668
PpsI GAGTC 3 cut(s) 310, 610, 668
Ppu21I YACGTR 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 365
PshBI ATTAAT 2 cut(s) 177, 666
Psp124BI GAGCTC 1 cut(s) 736
Psp1406I AACGTT 1 cut(s) 1189
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 3 cut(s) 57, 727, 1221
PspGI CCWGG 3 cut(s) 57, 727, 1221
PspN4I GGNNCC 4 cut(s) 348, 480, 847, 958
PspPI GGNCC 5 cut(s) 83, 365, 478, 697, 957
PspPPI RGGWCCY 1 cut(s) 365
PsrI GAACNNNNNNTAC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 994
PsuI RGATCY 3 cut(s) 469, 845, 1096
RsaI GTAC 9 cut(s) 90, 195, 540, 804, 837, 910, 922, 987, 1053
RsaNI GTAC 9 cut(s) 89, 194, 539, 803, 836, 909, 921, 986, 1052
RseI CAYNNNNRTG 3 cut(s) 582, 644, 1038
SacI GAGCTC 1 cut(s) 736
SaqAI TTAA 9 cut(s) 147, 177, 254, 459, 666, 761, 789, 1256, 1374
SatI GCNGC 1 cut(s) 1071
Sau3AI GATC 7 cut(s) 469, 555, 631, 845, 1096, 1249, 1380
Sau96I GGNCC 5 cut(s) 83, 365, 478, 697, 957
ScaI AGTACT 1 cut(s) 540
SchI GAGTC 3 cut(s) 310, 610, 669
ScrFI CCNGG 6 cut(s) 59, 110, 111, 729, 1223, 1335
SduI GDGCHC 2 cut(s) 736, 1273
SfaNI GCATC 1 cut(s) 1030
SfcI CTRYAG 2 cut(s) 228, 990
SinI GGWCC 3 cut(s) 83, 365, 957
SmaI CCCGGG 1 cut(s) 111
SmiMI CAYNNNNRTG 3 cut(s) 582, 644, 1038
SseBI AGGCCT 1 cut(s) 1418
SsiI CCGC 8 cut(s) 309, 405, 683, 725, 858, 1011, 1091, 1355
SspI AATATT 2 cut(s) 127, 776
SspMI CTAG 3 cut(s) 320, 701, 1352
SstI GAGCTC 1 cut(s) 736
StuI AGGCCT 1 cut(s) 1418
StyD4I CCNGG 6 cut(s) 57, 108, 109, 727, 1221, 1333
TaaI ACNGT 3 cut(s) 538, 1051, 1261
TaiI ACGT 7 cut(s) 46, 67, 273, 339, 804, 1115, 1192
TaqI TCGA 8 cut(s) 38, 154, 217, 372, 440, 816, 1132, 1440
TatI WGTACW 2 cut(s) 193, 538
TfiI GAWTC 5 cut(s) 653, 686, 1106, 1134, 1400
Tru1I TTAA 9 cut(s) 147, 177, 254, 459, 666, 761, 789, 1256, 1374
Tru9I TTAA 9 cut(s) 147, 177, 254, 459, 666, 761, 789, 1256, 1374
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 1070
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 7 cut(s) 662, 684, 731, 735, 1170, 1248, 1458
TspGWI ACGGA 3 cut(s) 580, 628, 818
TspMI CCCGGG 1 cut(s) 109
VpaK11BI GGWCC 3 cut(s) 83, 365, 957
VspI ATTAAT 2 cut(s) 177, 666
XapI RAATTY 2 cut(s) 327, 1394
XmaI CCCGGG 1 cut(s) 109
XmnI GAANNNNTTC 2 cut(s) 877, 940
XspI CTAG 3 cut(s) 320, 701, 1352
ZrmI AGTACT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.