Rroxscaffold_1G00030890

ATP synthase subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005978
Physical Location & Seq
Reverse (-)
41588353 .. 41594057
5705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030890.1

Sequence Viewer

Length: 1362 bp
ATGCCTAATATTTACAACGCTCTGGTAGTTAAGGGTCGAGATACTGCTGGTCAACAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTTTAAGTGTTCCAGTCGGCGGAGCGACTCTAGGACGAATTTTTAACGTACTTGGAGAGCCTGTGGATAATTTAGGTCCTGTAGATACTCGTACAACATCTCCTATTCATAGATCTGCGCCTGCTTTTATCCAGTTAGATACAAAACTATCCATTTTTGAAACAGGAATTAAAGTTGTAGATCTTCTAGCCCCTTATCGTCGTGGAGGAAAAATCGGACTTTTTGGGGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTGATCAACAACATTGCCAAAGCTCATGGGGGTGTATCCGTATTTGGCGGAGTGGGTGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCCGGCGTAATTAATGAACAAAATATTCCCGAATCAAAAGTGGCTCTAGTCTATGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGGGTTGGTTTAACCGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCAGGATCCGAAGTATCCGCTTTATTGGGCAGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGCTCTTTACAAGAAAGAATTACTTCTACCAAAGAGGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCGGACGATTTGACCGATCCTGCTCCGGCCACGACATTTGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCAAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACATCAACTATGCTCCAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAAGAAACTTTACAACGTTACAAAGAACTTCAGGATATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGACGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGAAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATCCTTTCTGGAGAATTAGATGGTCTTCCCGAGCAGGCCTTTTATTTAGTAGGTAACATCGATGAAGCTACTGCGAAAGCTACGACCTTAGGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N

Protein Analysis

453

Amino Acids

48.75

Weight (kDa)

5.04

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 2 - 56 5.1e-12 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 113 - 333 3e-71 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 339 - 418 2.3e-16 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1047
Acc36I ACCTGC 1 cut(s) 880
AciI CCGC 8 cut(s) 192, 483, 608, 639, 653, 741, 765, 875
AclI AACGTT 1 cut(s) 1072
AclWI GGATC 5 cut(s) 723, 736, 884, 974, 1258
AcoI YGGCCR 1 cut(s) 900
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 1070
AfaI GTAC 9 cut(s) 78, 222, 265, 423, 499, 687, 793, 870, 936
AfiI CCNNNNNNNGG 4 cut(s) 191, 649, 837, 1111
AgeI ACCGGT 1 cut(s) 1208
AgsI TTSAA 3 cut(s) 332, 857, 993
AjnI CCWGG 1 cut(s) 1216
Alw21I GWGCWC 3 cut(s) 172, 619, 1156
AlwI GGATC 5 cut(s) 723, 736, 884, 974, 1258
Ama87I CYCGRG 1 cut(s) 1292
AoxI GGCC 2 cut(s) 900, 1299
ApeKI GCWGC 1 cut(s) 953
ApoI RAATTY 1 cut(s) 210
AseI ATTAAT 2 cut(s) 60, 549
AsiGI ACCGGT 1 cut(s) 1208
Asp700I GAANNNNTTC 2 cut(s) 760, 823
AspLEI GCGC 2 cut(s) 292, 1048
AspS9I GGNCC 2 cut(s) 248, 840
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 503, 1037
AvaI CYCGRG 1 cut(s) 1292
AvaII GGWCC 2 cut(s) 248, 840
AxyI CCTNAGG 1 cut(s) 1351
BamHI GGATCC 1 cut(s) 728
BanII GRGCYC 3 cut(s) 172, 619, 806
BauI CACGAG 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 1134, 1280
Bbv12I GWGCWC 3 cut(s) 172, 619, 1156
BbvI GCAGC 1 cut(s) 940
BccI CCATC 2 cut(s) 125, 1277
BciT130I CCWGG 1 cut(s) 1218
BciVI GTATCC 2 cut(s) 481, 748
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 612
BfaI CTAG 4 cut(s) 203, 359, 584, 1235
BfmI CTRYAG 3 cut(s) 111, 126, 252
BfuAI ACCTGC 1 cut(s) 880
BfuI GTATCC 2 cut(s) 481, 748
BglII AGATCT 2 cut(s) 284, 352
BisI GCNGC 1 cut(s) 954
BlsI GCNGC 1 cut(s) 955
BmcAI AGTACT 1 cut(s) 423
Bme1390I CCNGG 2 cut(s) 612, 1218
Bme18I GGWCC 2 cut(s) 248, 840
BmeT110I CYCGRG 1 cut(s) 1292
BmgT120I GGNCC 2 cut(s) 248, 840
BmiI GGNNCC 3 cut(s) 730, 841, 1213
BmrFI CCNGG 2 cut(s) 612, 1218
BmsI GCATC 1 cut(s) 913
BpiI GAAGAC 2 cut(s) 1134, 1280
BpmI CTGGAG 2 cut(s) 426, 1293
BpuMI CCSGG 1 cut(s) 612
Bsa29I ATCGAT 1 cut(s) 1323
BsaJI CCNNGG 3 cut(s) 1013, 1105, 1216
BsaWI WCCGGW 1 cut(s) 1208
BsaXI ACNNNNNCTCC 8 cut(s) 154, 184, 219, 249, 256, 286, 393, 423
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 649, 837, 1111
Bse118I RCCGGY 1 cut(s) 1208
Bse1I ACTGG 2 cut(s) 185, 304
Bse21I CCTNAGG 1 cut(s) 1351
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 1218
BseCI ATCGAT 1 cut(s) 1323
BseDI CCNNGG 3 cut(s) 1013, 1105, 1216
BseLI CCNNNNNNNGG 4 cut(s) 191, 649, 837, 1111
BseMI GCAATG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 185, 304
BseXI GCAGC 1 cut(s) 940
Bsh1285I CGRYCG 1 cut(s) 1135
BshFI GGCC 2 cut(s) 902, 1301
BshTI ACCGGT 1 cut(s) 1208
BshVI ATCGAT 1 cut(s) 1323
BsiEI CGRYCG 1 cut(s) 1135
BsiHKAI GWGCWC 3 cut(s) 172, 619, 1156
BsiHKCI CYCGRG 1 cut(s) 1292
BsiSI CCGG 4 cut(s) 540, 612, 899, 1209
BslI CCNNNNNNNGG 4 cut(s) 191, 649, 837, 1111
BsmI GAATGC 1 cut(s) 762
BsnI GGCC 2 cut(s) 902, 1301
BsoBI CYCGRG 1 cut(s) 1292
Bsp1286I GDGCHC 4 cut(s) 172, 619, 806, 1156
Bsp143I GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
BspACI CCGC 8 cut(s) 192, 483, 608, 639, 653, 741, 765, 875
BspANI GGCC 2 cut(s) 902, 1301
BspDI ATCGAT 1 cut(s) 1323
BspLI GGNNCC 3 cut(s) 730, 841, 1213
BspMI ACCTGC 1 cut(s) 880
BspPI GGATC 5 cut(s) 723, 736, 884, 974, 1258
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 1 cut(s) 1208
BsrI ACTGG 2 cut(s) 185, 304
BssAI RCCGGY 1 cut(s) 1208
BssECI CCNNGG 3 cut(s) 1013, 1105, 1216
BssMI GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 1105
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 1218
Bst4CI ACNGT 3 cut(s) 421, 934, 1144
BstC8I GCNNGC 2 cut(s) 294, 1299
BstDEI CTNAG 3 cut(s) 788, 1351, 1359
BstHHI GCGC 2 cut(s) 292, 1048
BstKTI GATC 9 cut(s) 287, 355, 441, 517, 731, 892, 982, 1135, 1266
BstMBI GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
BstMCI CGRYCG 1 cut(s) 1135
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 1218
BstSCI CCNGG 2 cut(s) 610, 1216
BstSFI CTRYAG 3 cut(s) 111, 126, 252
BstV1I GCAGC 1 cut(s) 940
BstV2I GAAGAC 2 cut(s) 1134, 1280
BstX2I RGATCY 4 cut(s) 284, 352, 728, 979
BstYI RGATCY 4 cut(s) 284, 352, 728, 979
Bsu15I ATCGAT 1 cut(s) 1323
Bsu36I CCTNAGG 1 cut(s) 1351
BsuI GTATCC 2 cut(s) 481, 748
BsuRI GGCC 2 cut(s) 902, 1301
BsuTUI ATCGAT 1 cut(s) 1323
BveI ACCTGC 1 cut(s) 880
Cac8I GCNNGC 2 cut(s) 294, 1299
CfoI GCGC 2 cut(s) 292, 1048
Cfr10I RCCGGY 1 cut(s) 1208
Cfr13I GGNCC 2 cut(s) 248, 840
ClaI ATCGAT 1 cut(s) 1323
Csp6I GTAC 9 cut(s) 77, 221, 264, 422, 498, 686, 792, 869, 935
CspAI ACCGGT 1 cut(s) 1208
CspCI CAANNNNNGTGG 2 cut(s) 892, 927
CviAII CATG 2 cut(s) 461, 523
CviQI GTAC 9 cut(s) 77, 221, 264, 422, 498, 686, 792, 869, 935
DdeI CTNAG 3 cut(s) 788, 1351, 1359
DpnI GATC 9 cut(s) 286, 354, 440, 516, 730, 891, 981, 1134, 1265
DpnII GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
DraI TTTAAA 1 cut(s) 1258
EaeI YGGCCR 1 cut(s) 900
EciI GGCGGA 3 cut(s) 207, 498, 668
Ecl136II GAGCTC 2 cut(s) 170, 617
Eco130I CCWWGG 1 cut(s) 1105
Eco147I AGGCCT 1 cut(s) 1301
Eco24I GRGCYC 3 cut(s) 172, 619, 806
Eco47I GGWCC 2 cut(s) 248, 840
Eco53kI GAGCTC 2 cut(s) 170, 617
Eco57I CTGAAG 1 cut(s) 1070
Eco81I CCTNAGG 1 cut(s) 1351
Eco88I CYCGRG 1 cut(s) 1292
EcoICRI GAGCTC 2 cut(s) 170, 617
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 1216
EcoT14I CCWWGG 1 cut(s) 1105
EcoT38I GRGCYC 3 cut(s) 172, 619, 806
ErhI CCWWGG 1 cut(s) 1105
FaeI CATG 2 cut(s) 464, 526
FalI AAGNNNNNCTT 4 cut(s) 672, 704, 808, 840
FatI CATG 2 cut(s) 460, 522
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 954
FriOI GRGCYC 3 cut(s) 172, 619, 806
Fsp4HI GCNGC 1 cut(s) 954
FspBI CTAG 4 cut(s) 203, 359, 584, 1235
FspI TGCGCA 1 cut(s) 1047
GlaI GCGC 2 cut(s) 291, 1047
GluI GCNGC 1 cut(s) 954
GsuI CTGGAG 2 cut(s) 426, 1293
HaeIII GGCC 2 cut(s) 902, 1301
HapII CCGG 4 cut(s) 540, 612, 899, 1209
HhaI GCGC 2 cut(s) 292, 1048
Hin1II CATG 2 cut(s) 464, 526
Hin6I GCGC 2 cut(s) 290, 1046
HinP1I GCGC 2 cut(s) 290, 1046
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 4 cut(s) 199, 536, 569, 989
HpaII CCGG 4 cut(s) 540, 612, 899, 1209
HphI GGTGA 2 cut(s) 503, 1037
Hpy166II GTNNAC 2 cut(s) 53, 494
Hpy188I TCNGA 5 cut(s) 389, 665, 733, 1017, 1126
Hpy188III TCNNGA 7 cut(s) 38, 503, 566, 942, 1088, 1272, 1292
Hpy8I GTNNAC 2 cut(s) 53, 494
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 500, 771
HpyCH4III ACNGT 3 cut(s) 421, 934, 1144
HpyCH4IV ACGT 4 cut(s) 219, 496, 684, 1072
HpyCH4V TGCA 2 cut(s) 914, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 3 cut(s) 788, 1351, 1359
HpySE526I ACGT 4 cut(s) 219, 496, 684, 1072
Hsp92II CATG 2 cut(s) 464, 526
HspAI GCGC 2 cut(s) 290, 1046
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
LmnI GCTCC 7 cut(s) 167, 175, 194, 401, 614, 901, 1011
Lsp1109I GCAGC 1 cut(s) 940
LweI GCATC 1 cut(s) 913
MaeI CTAG 4 cut(s) 203, 359, 584, 1235
MaeII ACGT 4 cut(s) 219, 496, 684, 1072
MaeIII GTNAC 3 cut(s) 64, 1073, 1316
MalI GATC 9 cut(s) 286, 354, 440, 516, 730, 891, 981, 1134, 1265
MboI GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
MboII GAAGA 5 cut(s) 347, 700, 1040, 1139, 1280
MflI RGATCY 4 cut(s) 284, 352, 728, 979
MhlI GDGCHC 4 cut(s) 172, 619, 806, 1156
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 2 cut(s) 1033, 1092
MnlI CCTC 7 cut(s) 137, 371, 618, 829, 938, 1023, 1244
MroXI GAANNNNTTC 2 cut(s) 760, 823
MslI CAYNNNNRTG 3 cut(s) 465, 527, 921
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 4 cut(s) 540, 612, 899, 1209
MspR9I CCNGG 2 cut(s) 612, 1218
Mva1269I GAATGC 1 cut(s) 762
MvaI CCWGG 1 cut(s) 1218
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 612
NdeII GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
NlaIII CATG 2 cut(s) 464, 526
NlaIV GGNNCC 3 cut(s) 730, 841, 1213
NmuCI GTSAC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 1047
PceI AGGCCT 1 cut(s) 1301
PcsI WCGNNNNNNNCGW 2 cut(s) 885, 1122
PctI GAATGC 1 cut(s) 762
PdmI GAANNNNTTC 2 cut(s) 760, 823
PfeI GAWTC 3 cut(s) 536, 569, 989
PinAI ACCGGT 1 cut(s) 1208
PkrI GCNGC 1 cut(s) 955
Ple19I CGATCG 1 cut(s) 1135
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 248
PshBI ATTAAT 2 cut(s) 60, 549
Psp124BI GAGCTC 2 cut(s) 172, 619
Psp1406I AACGTT 1 cut(s) 1072
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 1216
PspGI CCWGG 1 cut(s) 1216
PspN4I GGNNCC 3 cut(s) 730, 841, 1213
PspPI GGNCC 2 cut(s) 248, 840
PspPPI RGGWCCY 1 cut(s) 248
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PsuI RGATCY 4 cut(s) 284, 352, 728, 979
PvuI CGATCG 1 cut(s) 1135
RsaI GTAC 9 cut(s) 78, 222, 265, 423, 499, 687, 793, 870, 936
RsaNI GTAC 9 cut(s) 77, 221, 264, 422, 498, 686, 792, 869, 935
RseI CAYNNNNRTG 3 cut(s) 465, 527, 921
SacI GAGCTC 2 cut(s) 172, 619
SatI GCNGC 1 cut(s) 954
Sau3AI GATC 9 cut(s) 284, 352, 438, 514, 728, 889, 979, 1132, 1263
Sau96I GGNCC 2 cut(s) 248, 840
ScaI AGTACT 1 cut(s) 423
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 612, 1218
SduI GDGCHC 4 cut(s) 172, 619, 806, 1156
SfaNI GCATC 1 cut(s) 913
SfcI CTRYAG 3 cut(s) 111, 126, 252
SinI GGWCC 2 cut(s) 248, 840
SmiMI CAYNNNNRTG 3 cut(s) 465, 527, 921
SseBI AGGCCT 1 cut(s) 1301
SsiI CCGC 8 cut(s) 192, 483, 608, 639, 653, 741, 765, 875
SspI AATATT 3 cut(s) 10, 562, 659
SspMI CTAG 4 cut(s) 203, 359, 584, 1235
SstI GAGCTC 2 cut(s) 172, 619
StuI AGGCCT 1 cut(s) 1301
StyD4I CCNGG 2 cut(s) 610, 1216
StyI CCWWGG 1 cut(s) 1105
TaaI ACNGT 3 cut(s) 421, 934, 1144
TaiI ACGT 4 cut(s) 222, 499, 687, 1075
TaqI TCGA 4 cut(s) 37, 100, 699, 1323
TaqII GACCGA 1 cut(s) 902
TatI WGTACW 2 cut(s) 76, 421
TfiI GAWTC 3 cut(s) 536, 569, 989
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 953
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 8 cut(s) 269, 545, 567, 614, 618, 690, 1053, 1341
TspGWI ACGGA 2 cut(s) 463, 701
VpaK11BI GGWCC 2 cut(s) 248, 840
VspI ATTAAT 2 cut(s) 60, 549
XapI RAATTY 1 cut(s) 210
XmnI GAANNNNTTC 2 cut(s) 760, 823
XspI CTAG 4 cut(s) 203, 359, 584, 1235
ZrmI AGTACT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.