Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005978

Physical Location & Seq

Genomic Coordinates Reverse (-)

42661280 .. 42677282

Gene Structure 16003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTCGTGAGTGGAAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGTTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCGCGAGGAATCTCTGGAATTAAAGTTGTAGATCTTCTAGCCCCTTATCGTCGTGGAGGAAAAATCGGACTTTTTGGGGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTGTATCTATATTTGGCGGAGTGGGTGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATGTTGCGTAATTAATGAACAAAATATTCCCGAATCAAAAGTGGCTCTAATCTATGGTCAAATGAATGAACCACCCGGAACTCGTATGAGGGTTGGTTTAACCACCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACATACTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCAGGATCCGAAGTATCCACTTTATTGGGCAGAATGCCTTCCACTGTGGGTTATCAACCCACCTTTAGTACCGAAATGGGCTCTTTACAAGAAATAATTACTTCTACCAAAGAGGGGTCCATAACTTCTATCAAGCAGTTTATGTACCAGCTGGCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N

Protein Analysis

233

Amino Acids

25.49

Weight (kDa)

7.72

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Photo_RC	PF00124	1 - 52	5.1e-18	Photosynthetic reaction centre protein
ATP-synt_ab	PF00006	52 - 225	7.2e-47	ATP synthase alpha/beta family, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00480
malus_domestica	MD01G1070700.v1.1 MD11G1295200.v1.1
pyrus_communis	pycom12397g00260
rosa_chinensis	RchiOBHm_Chr7g0228801 RchiOBHm_CPg0502121
rosa_laevigata	RLG00000000068 RLG00000000107 RLG00000000164 RLG00000000222 RLG00000000258 RLG00000000268 RLG00000000291 RLG00000000323 RLG00000000330 RLG00000000349 RLG00000030424 RLG00000037106
rosa_multiflora	Rmu_sc0013945.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030890
rosa_rugosa	RorugMtG0002300
rosa_samantha	Rh4BG163500 Rh6AG222700 Rh6BG226200 Rh7AG405300
rosa_wichuraiana	Rw6G019450 Rw7G033580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	142
AciI	CCGC	3 cut(s)	140, 300, 470
AclWI	GGATC	2 cut(s)	540, 553
AfaI	GTAC	4 cut(s)	240, 316, 610, 686
AfiI	CCNNNNNNNGG	2 cut(s)	466, 654
AluBI	AGCT	6 cut(s)	68, 80, 123, 221, 275, 691
AluI	AGCT	6 cut(s)	68, 80, 123, 221, 275, 691
AlwI	GGATC	2 cut(s)	540, 553
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	77
AseI	ATTAAT	1 cut(s)	366
Asp700I	GAANNNNTTC	2 cut(s)	124, 577
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	657
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	657
BamHI	GGATCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	623
BauI	CACGAG	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	429
BfaI	CTAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	565
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	78, 140
BlsI	GCNGC	2 cut(s)	79, 141
BmcAI	AGTACT	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	2 cut(s)	547, 658
BmrFI	CCNGG	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 654
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	466, 654
BseMI	GCAATG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	466, 654
BsmI	GAATGC	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp143I	GATC	5 cut(s)	99, 169, 255, 331, 545
BspACI	CCGC	3 cut(s)	140, 300, 470
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	547, 658
BspPI	GGATC	2 cut(s)	540, 553
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	5 cut(s)	99, 169, 255, 331, 545
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	134, 238, 586
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	1 cut(s)	20
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	102, 172, 258, 334, 548
BstMBI	GATC	5 cut(s)	99, 169, 255, 331, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 86
BstSCI	CCNGG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	89
BstX2I	RGATCY	2 cut(s)	169, 545
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	2 cut(s)	169, 545
BsuI	GTATCC	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	239, 315, 609, 685
CviAII	CATG	2 cut(s)	278, 340
CviJI	RGCY	9 cut(s)	68, 80, 123, 179, 221, 275, 398, 621, 691
CviKI_1	RGCY	9 cut(s)	68, 80, 123, 179, 221, 275, 398, 621, 691
CviQI	GTAC	4 cut(s)	239, 315, 609, 685
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	5 cut(s)	101, 171, 257, 333, 547
DpnII	GATC	5 cut(s)	99, 169, 255, 331, 545
EciI	GGCGGA	2 cut(s)	315, 485
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	2 cut(s)	281, 343
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	2 cut(s)	277, 339
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	78, 140
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	78, 140
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	78, 140
GsuI	CTGGAG	1 cut(s)	243
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	281, 343
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	2 cut(s)	147, 386
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	4 cut(s)	130, 206, 482, 550
Hpy188III	TCNNGA	5 cut(s)	8, 97, 153, 320, 383
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	317, 588
HpyCH4III	ACNGT	3 cut(s)	134, 238, 586
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	59, 77
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 86
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	2 cut(s)	281, 343
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	99, 169, 255, 331, 545
LmnI	GCTCC	2 cut(s)	73, 218
LpnPI	CCDG	7 cut(s)	17, 84, 138, 207, 442, 528, 677
Lsp1109I	GCAGC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	5 cut(s)	101, 171, 257, 333, 547
MboI	GATC	5 cut(s)	99, 169, 255, 331, 545
MboII	GAAGA	2 cut(s)	164, 517
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	2 cut(s)	169, 545
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	5 cut(s)	108, 156, 251, 363, 636
MnlI	CCTC	4 cut(s)	137, 188, 435, 646
MroXI	GAANNNNTTC	2 cut(s)	124, 577
MseI	TTAA	4 cut(s)	159, 366, 452, 489
MslI	CAYNNNNRTG	2 cut(s)	282, 344
MspA1I	CMGCKG	2 cut(s)	80, 691
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	579
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 86
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	5 cut(s)	99, 169, 255, 331, 545
NlaIII	CATG	2 cut(s)	281, 343
NlaIV	GGNNCC	2 cut(s)	547, 658
PctI	GAATGC	1 cut(s)	579
PdmI	GAANNNNTTC	2 cut(s)	124, 577
PfeI	GAWTC	2 cut(s)	147, 386
PkrI	GCNGC	2 cut(s)	79, 141
PshBI	ATTAAT	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	547, 658
PspPI	GGNCC	1 cut(s)	657
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	169, 545
PvuII	CAGCTG	2 cut(s)	80, 691
RsaI	GTAC	4 cut(s)	240, 316, 610, 686
RsaNI	GTAC	4 cut(s)	239, 315, 609, 685
RseI	CAYNNNNRTG	2 cut(s)	282, 344
SaqAI	TTAA	4 cut(s)	159, 366, 452, 489
SatI	GCNGC	2 cut(s)	78, 140
Sau3AI	GATC	5 cut(s)	99, 169, 255, 331, 545
Sau96I	GGNCC	1 cut(s)	657
ScaI	AGTACT	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	623
SetI	ASST	8 cut(s)	70, 82, 125, 223, 277, 316, 605, 693
SinI	GGWCC	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	282, 344
Sse9I	AATT	5 cut(s)	108, 156, 251, 363, 636
SsiI	CCGC	3 cut(s)	140, 300, 470
SspI	AATATT	2 cut(s)	379, 476
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	134, 238, 586
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	516
TasI	AATT	5 cut(s)	108, 156, 251, 363, 636
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	147, 386
Tru1I	TTAA	4 cut(s)	159, 366, 452, 489
Tru9I	TTAA	4 cut(s)	159, 366, 452, 489
TscAI	CASTG	1 cut(s)	589
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	362, 384, 431, 435, 507
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	657
VspI	ATTAAT	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	124, 577
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.