Rh7AG405300

ATP synthase subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005978
Physical Location & Seq
Forward (+)
53436171 .. 53437031
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG405300.1

Sequence Viewer

Length: 861 bp
ATGAGAATAAATCCTAGTACTTCTGGTCCTGAGGTTTCCGCACTTGAAAAAAAAAACCTGGGGCGTATTGCTCAAATCATTGGTCCGGTACTGGATGTAGCTTTTCCACCCGGCAAGATGCGTAATATTTACAACGCTCTGGTAGTTAAGAGTCGAGATAGCGCTGGTCAACAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGTTGTAGCTATGAGTGCTACAGATGGTCTAGCGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTTTAAGTGTTCAAGTCGGTGGAGCGACTCTAGGACTAATTTTTAACTTACTTGGAGAGCCTGTGGATAATTTAGGTCCTGTAGATACTCGTATAATATCTCCTATTCATAGATATGCGCCTGCCTTTATCCAGTTAGATACAAAACTATCCATTTTTGAAATAGGAATTAAAGTTGTAGATCATCTAGCCCCTTATCAACGTGGAGGAAAAATCAGACTTTTTGGGGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTGATCAACAACATTGCCAAAGCTCATGGGGGTGTATCCGTATTTGGCGGAGTGGGTGAACATACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCCGGCGTAACTAATGAACAAAATATTCCAGAATCAAAAGTGGCTCTAGTCTATGGTCAAATGAATGAACCGCCCGGAGCTTGTATAAGGGTTGGTTTAACCGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N

Protein Analysis

286

Amino Acids

30.68

Weight (kDa)

6.97

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 23 - 95 5.5e-19 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 152 - 272 1.5e-26 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 825
AciI CCGC 5 cut(s) 39, 600, 725, 756, 770
AfaI GTAC 5 cut(s) 19, 90, 195, 540, 804
AfeI AGCGCT 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 766
AgsI TTSAA 3 cut(s) 47, 302, 449
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 6 cut(s) 101, 233, 287, 521, 575, 734
AluI AGCT 6 cut(s) 101, 233, 287, 521, 575, 734
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 823
Aor51HI AGCGCT 1 cut(s) 163
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
AseI ATTAAT 1 cut(s) 177
AspA2I CCTAGG 1 cut(s) 829
AspLEI GCGC 2 cut(s) 164, 409
AspS9I GGNCC 3 cut(s) 26, 83, 365
AsuC2I CCSGG 2 cut(s) 111, 729
AsuHPI GGTGA 1 cut(s) 620
AvaII GGWCC 3 cut(s) 26, 83, 365
AvrII CCTAGG 1 cut(s) 829
AxyI CCTNAGG 1 cut(s) 30
BanI GGYRCC 1 cut(s) 825
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 289
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 2 cut(s) 598, 845
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 2 cut(s) 111, 729
BcoDI GTCTC 1 cut(s) 823
BfaI CTAG 6 cut(s) 15, 254, 320, 476, 701, 830
BfmI CTRYAG 2 cut(s) 243, 369
BfoI RGCGCY 1 cut(s) 165
BfuI GTATCC 2 cut(s) 598, 845
BlnI CCTAGG 1 cut(s) 829
BmcAI AGTACT 2 cut(s) 19, 540
Bme1390I CCNGG 3 cut(s) 59, 111, 729
Bme18I GGWCC 3 cut(s) 26, 83, 365
BmgT120I GGNCC 3 cut(s) 26, 83, 365
BmiI GGNNCC 1 cut(s) 827
BmrFI CCNGG 3 cut(s) 59, 111, 729
BmsI GCATC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 543
BpuMI CCSGG 2 cut(s) 111, 729
BsaJI CCNNGG 2 cut(s) 58, 829
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 6 cut(s) 271, 301, 336, 366, 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse1I ACTGG 2 cut(s) 96, 421
Bse21I CCTNAGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 58, 829
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 96, 421
BshNI GGYRCC 1 cut(s) 825
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 4 cut(s) 86, 111, 657, 729
BslI CCNNNNNNNGG 1 cut(s) 766
BsmAI GTCTC 1 cut(s) 823
BsmBI CGTCTC 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 3 cut(s) 469, 555, 631
BspACI CCGC 5 cut(s) 39, 600, 725, 756, 770
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 827
BspT107I GGYRCC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 2 cut(s) 96, 421
BssECI CCNNGG 2 cut(s) 58, 829
BssMI GATC 3 cut(s) 469, 555, 631
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 829
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 538, 842
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 164, 409
BstKTI GATC 3 cut(s) 472, 558, 634
BstMAI GTCTC 1 cut(s) 823
BstMBI GATC 3 cut(s) 469, 555, 631
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 3 cut(s) 57, 109, 727
BstSFI CTRYAG 2 cut(s) 243, 369
Bsu36I CCTNAGG 1 cut(s) 30
BsuI GTATCC 2 cut(s) 598, 845
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 2 cut(s) 164, 409
Cfr13I GGNCC 3 cut(s) 26, 83, 365
Csp6I GTAC 5 cut(s) 18, 89, 194, 539, 803
CviAII CATG 2 cut(s) 578, 640
CviQI GTAC 5 cut(s) 18, 89, 194, 539, 803
DdeI CTNAG 1 cut(s) 30
DpnI GATC 3 cut(s) 471, 557, 633
DpnII GATC 3 cut(s) 469, 555, 631
EciI GGCGGA 2 cut(s) 615, 785
Ecl136II GAGCTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 26, 83, 365
Eco47III AGCGCT 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 829
Esp3I CGTCTC 1 cut(s) 823
FaeI CATG 2 cut(s) 581, 643
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 2 cut(s) 577, 639
FbaI TGATCA 1 cut(s) 555
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 289
FspBI CTAG 6 cut(s) 15, 254, 320, 476, 701, 830
GlaI GCGC 2 cut(s) 163, 408
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 165
HapII CCGG 4 cut(s) 86, 111, 657, 729
HhaI GCGC 2 cut(s) 164, 409
Hin1II CATG 2 cut(s) 581, 643
Hin6I GCGC 2 cut(s) 162, 407
HinP1I GCGC 2 cut(s) 162, 407
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HinfI GANTC 4 cut(s) 151, 316, 653, 686
HpaII CCGG 4 cut(s) 86, 111, 657, 729
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 2 cut(s) 170, 611
Hpy188I TCNGA 2 cut(s) 506, 782
Hpy188III TCNNGA 4 cut(s) 29, 155, 620, 683
Hpy8I GTNNAC 2 cut(s) 170, 611
HpyAV CCTTC 1 cut(s) 617
HpyCH4III ACNGT 2 cut(s) 538, 842
HpyCH4IV ACGT 2 cut(s) 490, 801
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 2 cut(s) 490, 801
Hsp92II CATG 2 cut(s) 581, 643
HspAI GCGC 2 cut(s) 162, 407
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 3 cut(s) 469, 555, 631
LmnI GCTCC 5 cut(s) 284, 292, 311, 518, 731
LweI GCATC 1 cut(s) 108
MaeI CTAG 6 cut(s) 15, 254, 320, 476, 701, 830
MaeII ACGT 2 cut(s) 490, 801
MaeIII GTNAC 2 cut(s) 181, 661
MalI GATC 3 cut(s) 471, 557, 633
MboI GATC 3 cut(s) 469, 555, 631
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 6 cut(s) 174, 200, 327, 358, 456, 551
MlyI GAGTC 2 cut(s) 160, 310
MnlI CCTC 3 cut(s) 25, 254, 488
MseI TTAA 7 cut(s) 147, 177, 293, 333, 459, 752, 789
MslI CAYNNNNRTG 4 cut(s) 402, 582, 618, 644
MspI CCGG 4 cut(s) 86, 111, 657, 729
MspR9I CCNGG 3 cut(s) 59, 111, 729
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 2 cut(s) 111, 729
NdeII GATC 3 cut(s) 469, 555, 631
NlaIII CATG 2 cut(s) 581, 643
NlaIV GGNNCC 1 cut(s) 827
NmuCI GTSAC 1 cut(s) 181
PfeI GAWTC 2 cut(s) 653, 686
PleI GAGTC 2 cut(s) 159, 310
PpsI GAGTC 2 cut(s) 159, 310
PpuMI RGGWCCY 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 827
PspPI GGNCC 3 cut(s) 26, 83, 365
PspPPI RGGWCCY 1 cut(s) 365
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
RsaI GTAC 5 cut(s) 19, 90, 195, 540, 804
RsaNI GTAC 5 cut(s) 18, 89, 194, 539, 803
RseI CAYNNNNRTG 4 cut(s) 402, 582, 618, 644
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 7 cut(s) 147, 177, 293, 333, 459, 752, 789
Sau3AI GATC 3 cut(s) 469, 555, 631
Sau96I GGNCC 3 cut(s) 26, 83, 365
ScaI AGTACT 2 cut(s) 19, 540
SchI GAGTC 2 cut(s) 160, 310
ScrFI CCNGG 3 cut(s) 59, 111, 729
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 2 cut(s) 243, 369
SinI GGWCC 3 cut(s) 26, 83, 365
SmiMI CAYNNNNRTG 4 cut(s) 402, 582, 618, 644
Sse9I AATT 6 cut(s) 174, 200, 327, 358, 456, 551
SsiI CCGC 5 cut(s) 39, 600, 725, 756, 770
SspI AATATT 3 cut(s) 127, 679, 776
SspMI CTAG 6 cut(s) 15, 254, 320, 476, 701, 830
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 57, 109, 727
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 2 cut(s) 538, 842
TaiI ACGT 2 cut(s) 493, 804
TaqI TCGA 2 cut(s) 154, 217
TasI AATT 6 cut(s) 174, 200, 327, 358, 456, 551
TatI WGTACW 3 cut(s) 17, 193, 538
TfiI GAWTC 2 cut(s) 653, 686
Tru1I TTAA 7 cut(s) 147, 177, 293, 333, 459, 752, 789
Tru9I TTAA 7 cut(s) 147, 177, 293, 333, 459, 752, 789
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 6 cut(s) 386, 662, 684, 731, 735, 807
TspGWI ACGGA 1 cut(s) 580
VpaK11BI GGWCC 3 cut(s) 26, 83, 365
VspI ATTAAT 1 cut(s) 177
XmaJI CCTAGG 1 cut(s) 829
XspI CTAG 6 cut(s) 15, 254, 320, 476, 701, 830
ZrmI AGTACT 2 cut(s) 19, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.