RLG00000030424

ATP synthase subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005978
Physical Location & Seq
Reverse (-)
61284151 .. 61285507
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030424

Sequence Viewer

Length: 1080 bp
ATGGAATTGATCAACAACACTGCCAAAGCTCATGGGGGTGTATCCGTATTTGGCGGAGTGGGTGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCCGGCGTAATTAATGAACAAAATATTCCCGAATCAAAAGTGGCTCTAGTCTATGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGGGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCAGGATCCGAAGTATCCGCTTTATTGGGCAGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGCTCTTTACAAGAAAGAATTACTTCTACCAAAGAGGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCGGATGATTTGACCGATCTTGCTCCGGCCACGACATTTGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACATCAACTATGCTCCAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAAGAAACTTTACAACGTTACAAAGAACTTCAGGATATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGACGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGAAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATCCTTTCTGGAGAATTAGATGGTCTTCCTGAGCAGGCCTTTTATTTAGTAGGCAATAATGAGATCACGGTTTTAGTAAATGATGCGGAGAAGGGTAGTGACATTAATCCACAAGAAGCTCAACAAACTCTTGAAATTGCAGAAGCTAACTTGAGGAAAGCTGAAGGCAAGAGACAAACAATTGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTCGAGGCTATCAATGTGATGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_DE ATP-synt_ab ATP-synt_ab_N

Protein Analysis

360

Amino Acids

39.4

Weight (kDa)

4.84

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 4 - 190 7.2e-57 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 196 - 275 1.4e-16 C-terminal domain of V and A type ATP synthase
ATP-synt_DE PF00401 312 - 355 2.2e-07 ATP synthase, Delta/Epsilon chain, long alpha-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 451
AciI CCGC 7 cut(s) 54, 179, 224, 312, 336, 446, 920
AclI AACGTT 1 cut(s) 643
AclWI GGATC 4 cut(s) 294, 307, 545, 829
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 1 cut(s) 1024
AcuI CTGAAG 2 cut(s) 641, 1017
AfaI GTAC 5 cut(s) 70, 258, 364, 441, 507
AfiI CCNNNNNNNGG 3 cut(s) 220, 408, 682
AgeI ACCGGT 1 cut(s) 779
AgsI TTSAA 3 cut(s) 428, 564, 968
AjnI CCWGG 1 cut(s) 787
AluBI AGCT 9 cut(s) 29, 188, 524, 671, 953, 980, 995, 1031, 1043
AluI AGCT 9 cut(s) 29, 188, 524, 671, 953, 980, 995, 1031, 1043
Alw21I GWGCWC 2 cut(s) 190, 727
Alw26I GTCTC 1 cut(s) 1000
AlwI GGATC 4 cut(s) 294, 307, 545, 829
AoxI GGCC 2 cut(s) 471, 870
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 1024
AseI ATTAAT 2 cut(s) 120, 939
AsiGI ACCGGT 1 cut(s) 779
Asp700I GAANNNNTTC 2 cut(s) 331, 394
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 411
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 74, 608
AvaII GGWCC 1 cut(s) 411
BamHI GGATCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 190, 377
BauI CACGAG 2 cut(s) 72, 1050
BbsI GAAGAC 2 cut(s) 705, 851
Bbv12I GWGCWC 2 cut(s) 190, 727
BbvI GCAGC 1 cut(s) 511
BccI CCATC 1 cut(s) 848
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 2 cut(s) 52, 319
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 1000
BfaI CTAG 3 cut(s) 155, 806, 1044
BfuAI ACCTGC 1 cut(s) 451
BfuI GTATCC 2 cut(s) 52, 319
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 183, 789
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 3 cut(s) 301, 412, 784
BmrFI CCNGG 2 cut(s) 183, 789
BmsI GCATC 2 cut(s) 484, 907
BoxI GACNNNNGTC 1 cut(s) 1052
BpiI GAAGAC 2 cut(s) 705, 851
BpmI CTGGAG 1 cut(s) 864
Bpu10I CCTNAGC 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 1006
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 584, 676, 787
BsaWI WCCGGW 1 cut(s) 779
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 408, 682
Bse118I RCCGGY 1 cut(s) 779
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 3 cut(s) 584, 676, 787
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 3 cut(s) 220, 408, 682
BseMII CTCAG 2 cut(s) 855, 1048
BseXI GCAGC 1 cut(s) 511
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 2 cut(s) 473, 872
BshTI ACCGGT 1 cut(s) 779
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 2 cut(s) 190, 727
BsiSI CCGG 4 cut(s) 111, 183, 470, 780
BslI CCNNNNNNNGG 3 cut(s) 220, 408, 682
BsmAI GTCTC 1 cut(s) 1000
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 2 cut(s) 473, 872
Bsp1286I GDGCHC 3 cut(s) 190, 377, 727
Bsp143I GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
BspACI CCGC 7 cut(s) 54, 179, 224, 312, 336, 446, 920
BspANI GGCC 2 cut(s) 473, 872
BspCNI CTCAG 2 cut(s) 856, 1047
BspLI GGNNCC 3 cut(s) 301, 412, 784
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 4 cut(s) 294, 307, 545, 829
BsrFI RCCGGY 1 cut(s) 779
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 3 cut(s) 584, 676, 787
BssMI GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
BssSI CACGAG 2 cut(s) 72, 1050
BssT1I CCWWGG 1 cut(s) 676
Bst2BI CACGAG 2 cut(s) 72, 1050
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 3 cut(s) 505, 715, 904
BstC8I GCNNGC 1 cut(s) 870
BstDEI CTNAG 3 cut(s) 359, 864, 1034
BstF5I GGATG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 8 cut(s) 12, 88, 302, 463, 553, 706, 837, 900
BstMAI GTCTC 1 cut(s) 1000
BstMBI GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 1 cut(s) 1028
BstNI CCWGG 1 cut(s) 789
BstPAI GACNNNNGTC 1 cut(s) 1052
BstSCI CCNGG 2 cut(s) 181, 787
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 2 cut(s) 705, 851
BstX2I RGATCY 2 cut(s) 299, 550
BstYI RGATCY 2 cut(s) 299, 550
BsuI GTATCC 2 cut(s) 52, 319
BsuRI GGCC 2 cut(s) 473, 872
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 870
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 411
Csp6I GTAC 5 cut(s) 69, 257, 363, 440, 506
CspAI ACCGGT 1 cut(s) 779
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviAII CATG 2 cut(s) 32, 94
CviQI GTAC 5 cut(s) 69, 257, 363, 440, 506
DdeI CTNAG 3 cut(s) 359, 864, 1034
DpnI GATC 8 cut(s) 11, 87, 301, 462, 552, 705, 836, 899
DpnII GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 471
EciI GGCGGA 2 cut(s) 69, 239
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 676
Eco147I AGGCCT 1 cut(s) 872
Eco24I GRGCYC 2 cut(s) 190, 377
Eco47I GGWCC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 188
Eco57I CTGAAG 2 cut(s) 641, 1017
EcoICRI GAGCTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 190, 377
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 2 cut(s) 35, 97
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 379, 411
FatI CATG 2 cut(s) 31, 93
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 2 cut(s) 190, 377
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 3 cut(s) 155, 806, 1044
FspI TGCGCA 1 cut(s) 618
GlaI GCGC 1 cut(s) 618
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 2 cut(s) 473, 872
HapII CCGG 4 cut(s) 111, 183, 470, 780
HhaI GCGC 1 cut(s) 619
Hin1II CATG 2 cut(s) 35, 97
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HinfI GANTC 4 cut(s) 107, 140, 560, 1053
HpaII CCGG 4 cut(s) 111, 183, 470, 780
HphI GGTGA 2 cut(s) 74, 608
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 5 cut(s) 236, 304, 588, 697, 1037
Hpy188III TCNNGA 7 cut(s) 74, 137, 513, 659, 843, 863, 965
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 71, 342, 919, 992
HpyCH4III ACNGT 3 cut(s) 505, 715, 904
HpyCH4IV ACGT 3 cut(s) 67, 255, 643
HpyCH4V TGCA 2 cut(s) 485, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 1028
HpyF3I CTNAG 3 cut(s) 359, 864, 1034
HpySE526I ACGT 3 cut(s) 67, 255, 643
Hsp92II CATG 2 cut(s) 35, 97
HspAI GCGC 1 cut(s) 617
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
LmnI GCTCC 3 cut(s) 185, 472, 582
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 2 cut(s) 484, 907
MaeI CTAG 3 cut(s) 155, 806, 1044
MaeII ACGT 3 cut(s) 67, 255, 643
MaeIII GTNAC 2 cut(s) 644, 932
MalI GATC 8 cut(s) 11, 87, 301, 462, 552, 705, 836, 899
MboI GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
MboII GAAGA 4 cut(s) 271, 611, 710, 851
MfeI CAATTG 1 cut(s) 1014
MflI RGATCY 2 cut(s) 299, 550
MhlI GDGCHC 3 cut(s) 190, 377, 727
MlyI GAGTC 1 cut(s) 1062
MmeI TCCRAC 2 cut(s) 604, 663
MnlI CCTC 8 cut(s) 189, 400, 509, 594, 815, 981, 1012, 1051
MroXI GAANNNNTTC 2 cut(s) 331, 394
MseI TTAA 7 cut(s) 120, 206, 243, 627, 710, 828, 939
MslI CAYNNNNRTG 3 cut(s) 36, 98, 492
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 4 cut(s) 111, 183, 470, 780
MspR9I CCNGG 2 cut(s) 183, 789
MunI CAATTG 1 cut(s) 1014
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 1 cut(s) 789
MwoI GCNNNNNNNGC 1 cut(s) 1028
NciI CCSGG 1 cut(s) 183
NdeII GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
NlaIII CATG 2 cut(s) 35, 97
NlaIV GGNNCC 3 cut(s) 301, 412, 784
NmuCI GTSAC 1 cut(s) 932
NsbI TGCGCA 1 cut(s) 618
PceI AGGCCT 1 cut(s) 872
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PctI GAATGC 1 cut(s) 333
PdmI GAANNNNTTC 2 cut(s) 331, 394
PfeI GAWTC 3 cut(s) 107, 140, 560
PinAI ACCGGT 1 cut(s) 779
PkrI GCNGC 1 cut(s) 526
Ple19I CGATCG 1 cut(s) 706
PleI GAGTC 1 cut(s) 1061
PpsI GAGTC 1 cut(s) 1061
PshAI GACNNNNGTC 1 cut(s) 1052
PshBI ATTAAT 2 cut(s) 120, 939
Psp124BI GAGCTC 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 3 cut(s) 301, 412, 784
PspPI GGNCC 1 cut(s) 411
PsrI GAACNNNNNNTAC 2 cut(s) 240, 272
PsuI RGATCY 2 cut(s) 299, 550
PvuI CGATCG 1 cut(s) 706
RsaI GTAC 5 cut(s) 70, 258, 364, 441, 507
RsaNI GTAC 5 cut(s) 69, 257, 363, 440, 506
RseI CAYNNNNRTG 3 cut(s) 36, 98, 492
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 7 cut(s) 120, 206, 243, 627, 710, 828, 939
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 8 cut(s) 9, 85, 299, 460, 550, 703, 834, 897
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 1 cut(s) 1062
ScrFI CCNGG 2 cut(s) 183, 789
SduI GDGCHC 3 cut(s) 190, 377, 727
SfaNI GCATC 2 cut(s) 484, 907
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 3 cut(s) 36, 98, 492
SmlI CTYRAG 1 cut(s) 985
SmoI CTYRAG 1 cut(s) 985
SseBI AGGCCT 1 cut(s) 872
SsiI CCGC 7 cut(s) 54, 179, 224, 312, 336, 446, 920
SspI AATATT 2 cut(s) 133, 230
SspMI CTAG 3 cut(s) 155, 806, 1044
SstI GAGCTC 1 cut(s) 190
StuI AGGCCT 1 cut(s) 872
StyD4I CCNGG 2 cut(s) 181, 787
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 505, 715, 904
TaiI ACGT 3 cut(s) 70, 258, 646
TaqI TCGA 2 cut(s) 270, 1056
TaqII GACCGA 1 cut(s) 473
TfiI GAWTC 3 cut(s) 107, 140, 560
Tru1I TTAA 7 cut(s) 120, 206, 243, 627, 710, 828, 939
Tru9I TTAA 7 cut(s) 120, 206, 243, 627, 710, 828, 939
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 932
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 1 cut(s) 932
TspDTI ATGAA 6 cut(s) 116, 138, 185, 189, 261, 624
TspGWI ACGGA 2 cut(s) 34, 272
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 411
VspI ATTAAT 2 cut(s) 120, 939
XapI RAATTY 1 cut(s) 1024
XmnI GAANNNNTTC 2 cut(s) 331, 394
XspI CTAG 3 cut(s) 155, 806, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.