Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005978

Physical Location & Seq

Genomic Coordinates Reverse (-)

38822239 .. 38823102

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAATTGATCAACAACATTGCCAAAGCTCATGGGGGTGTATCCGTATTTGGCGGAGTGGGTGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCCGGCGTAATTAATGAACAAAATATTCCCGAATCAAAAGTGGCTCTAGTCTATGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGGGTTGGTTTAACCGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCAGGATCCGAAGTATCCGCTTTATTGGGCAGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGCTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCGGACGATTTGACCGATCCTGCTCCGGCCACGACATTTGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACATCAACTATGCTCCAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAAGAAACTTTACAACGTTACAAAGAACTTCAGGATATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGACGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGAAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATCCTTTCTGGAGAATTAGAAGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_DE ATP-synt_ab ATP-synt_ab_N

Protein Analysis

287

Amino Acids

31.55

Weight (kDa)

4.76

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	3 - 190	2.2e-58	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C	PF22919	196 - 286	4.6e-17	C-terminal domain of V and A type ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00480
malus_domestica	MD01G1070700.v1.1 MD11G1295200.v1.1
pyrus_communis	pycom12397g00260
rosa_chinensis	RchiOBHm_Chr7g0228801 RchiOBHm_CPg0502121
rosa_laevigata	RLG00000000068 RLG00000000107 RLG00000000164 RLG00000000222 RLG00000000258 RLG00000000268 RLG00000000291 RLG00000000323 RLG00000000330 RLG00000000349 RLG00000030424 RLG00000037106
rosa_multiflora	Rmu_sc0013945.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030890
rosa_rugosa	RorugMtG0002300
rosa_samantha	Rh4BG163500 Rh6AG222700 Rh6BG226200 Rh7AG405300
rosa_wichuraiana	Rw6G019450 Rw7G033580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	451
AciI	CCGC	7 cut(s)	54, 179, 210, 224, 312, 336, 446
AclI	AACGTT	1 cut(s)	643
AclWI	GGATC	5 cut(s)	294, 307, 455, 545, 829
AcoI	YGGCCR	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	641
AfaI	GTAC	6 cut(s)	70, 258, 364, 441, 507, 860
AfiI	CCNNNNNNNGG	3 cut(s)	220, 408, 682
AgeI	ACCGGT	1 cut(s)	779
AgsI	TTSAA	2 cut(s)	428, 564
AjnI	CCWGG	1 cut(s)	787
AluBI	AGCT	4 cut(s)	29, 188, 524, 671
AluI	AGCT	4 cut(s)	29, 188, 524, 671
Alw21I	GWGCWC	2 cut(s)	190, 727
AlwI	GGATC	5 cut(s)	294, 307, 455, 545, 829
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	524
AseI	ATTAAT	1 cut(s)	120
AsiGI	ACCGGT	1 cut(s)	779
Asp700I	GAANNNNTTC	2 cut(s)	331, 394
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	74, 608
AvaII	GGWCC	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	299
BanII	GRGCYC	2 cut(s)	190, 377
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	2 cut(s)	190, 727
BbvI	GCAGC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	789
BciVI	GTATCC	2 cut(s)	52, 319
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	2 cut(s)	155, 806
BfuAI	ACCTGC	1 cut(s)	451
BfuI	GTATCC	2 cut(s)	52, 319
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
BmcAI	AGTACT	1 cut(s)	860
Bme1390I	CCNGG	2 cut(s)	183, 789
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	3 cut(s)	301, 412, 784
BmrFI	CCNGG	2 cut(s)	183, 789
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	584, 676, 787
BsaWI	WCCGGW	1 cut(s)	779
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 408, 682
Bse118I	RCCGGY	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	3 cut(s)	584, 676, 787
BseLI	CCNNNNNNNGG	3 cut(s)	220, 408, 682
BseMI	GCAATG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	511
Bsh1285I	CGRYCG	1 cut(s)	706
BshFI	GGCC	1 cut(s)	473
BshTI	ACCGGT	1 cut(s)	779
BsiEI	CGRYCG	1 cut(s)	706
BsiHKAI	GWGCWC	2 cut(s)	190, 727
BsiSI	CCGG	4 cut(s)	111, 183, 470, 780
BslI	CCNNNNNNNGG	3 cut(s)	220, 408, 682
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	473
Bsp1286I	GDGCHC	3 cut(s)	190, 377, 727
Bsp143I	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
BspACI	CCGC	7 cut(s)	54, 179, 210, 224, 312, 336, 446
BspANI	GGCC	1 cut(s)	473
BspLI	GGNNCC	3 cut(s)	301, 412, 784
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	5 cut(s)	294, 307, 455, 545, 829
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	779
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	3 cut(s)	584, 676, 787
BssMI	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	676
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	2 cut(s)	505, 715
Bst6I	CTCTTC	1 cut(s)	849
BstDEI	CTNAG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	7 cut(s)	12, 88, 302, 463, 553, 706, 837
BstMBI	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
BstMCI	CGRYCG	1 cut(s)	706
BstNI	CCWGG	1 cut(s)	789
BstSCI	CCNGG	2 cut(s)	181, 787
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	2 cut(s)	299, 550
BstYI	RGATCY	2 cut(s)	299, 550
BsuI	GTATCC	2 cut(s)	52, 319
BsuRI	GGCC	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	451
CfoI	GCGC	1 cut(s)	619
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	6 cut(s)	69, 257, 363, 440, 506, 859
CspAI	ACCGGT	1 cut(s)	779
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	2 cut(s)	32, 94
CviJI	RGCY	7 cut(s)	29, 152, 188, 375, 473, 524, 671
CviKI_1	RGCY	7 cut(s)	29, 152, 188, 375, 473, 524, 671
CviQI	GTAC	6 cut(s)	69, 257, 363, 440, 506, 859
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	7 cut(s)	11, 87, 301, 462, 552, 705, 836
DpnII	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
DraI	TTTAAA	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
EciI	GGCGGA	2 cut(s)	69, 239
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	2 cut(s)	190, 377
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	190, 377
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	2 cut(s)	35, 97
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 379, 411
FatI	CATG	2 cut(s)	31, 93
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	2 cut(s)	190, 377
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	2 cut(s)	155, 806
FspI	TGCGCA	1 cut(s)	618
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	4 cut(s)	111, 183, 470, 780
HhaI	GCGC	1 cut(s)	619
Hin1II	CATG	2 cut(s)	35, 97
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HinfI	GANTC	3 cut(s)	107, 140, 560
HpaII	CCGG	4 cut(s)	111, 183, 470, 780
HphI	GGTGA	2 cut(s)	74, 608
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	4 cut(s)	236, 304, 588, 697
Hpy188III	TCNNGA	5 cut(s)	74, 137, 513, 659, 843
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	71, 342, 401
HpyCH4III	ACNGT	2 cut(s)	505, 715
HpyCH4IV	ACGT	3 cut(s)	67, 255, 643
HpyCH4V	TGCA	1 cut(s)	485
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	3 cut(s)	67, 255, 643
Hsp92II	CATG	2 cut(s)	35, 97
HspAI	GCGC	1 cut(s)	617
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
LmnI	GCTCC	3 cut(s)	185, 472, 582
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	155, 806
MaeII	ACGT	3 cut(s)	67, 255, 643
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	7 cut(s)	11, 87, 301, 462, 552, 705, 836
MboI	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
MboII	GAAGA	3 cut(s)	271, 611, 710
MflI	RGATCY	2 cut(s)	299, 550
MhlI	GDGCHC	3 cut(s)	190, 377, 727
MluCI	AATT	8 cut(s)	5, 117, 390, 689, 732, 816, 830, 848
MmeI	TCCRAC	2 cut(s)	604, 663
MnlI	CCTC	4 cut(s)	189, 509, 594, 815
MroXI	GAANNNNTTC	2 cut(s)	331, 394
MseI	TTAA	6 cut(s)	120, 206, 243, 627, 710, 828
MslI	CAYNNNNRTG	3 cut(s)	36, 98, 492
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	4 cut(s)	111, 183, 470, 780
MspR9I	CCNGG	2 cut(s)	183, 789
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	789
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
NlaIII	CATG	2 cut(s)	35, 97
NlaIV	GGNNCC	3 cut(s)	301, 412, 784
NsbI	TGCGCA	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	2 cut(s)	456, 693
PctI	GAATGC	1 cut(s)	333
PdmI	GAANNNNTTC	2 cut(s)	331, 394
PfeI	GAWTC	3 cut(s)	107, 140, 560
PinAI	ACCGGT	1 cut(s)	779
PkrI	GCNGC	1 cut(s)	526
Ple19I	CGATCG	1 cut(s)	706
PshBI	ATTAAT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	3 cut(s)	301, 412, 784
PspPI	GGNCC	1 cut(s)	411
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PsuI	RGATCY	2 cut(s)	299, 550
PvuI	CGATCG	1 cut(s)	706
RsaI	GTAC	6 cut(s)	70, 258, 364, 441, 507, 860
RsaNI	GTAC	6 cut(s)	69, 257, 363, 440, 506, 859
RseI	CAYNNNNRTG	3 cut(s)	36, 98, 492
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	6 cut(s)	120, 206, 243, 627, 710, 828
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	7 cut(s)	9, 85, 299, 460, 550, 703, 834
Sau96I	GGNCC	1 cut(s)	411
ScaI	AGTACT	1 cut(s)	860
ScrFI	CCNGG	2 cut(s)	183, 789
SduI	GDGCHC	3 cut(s)	190, 377, 727
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	3 cut(s)	36, 98, 492
Sse9I	AATT	8 cut(s)	5, 117, 390, 689, 732, 816, 830, 848
SsiI	CCGC	7 cut(s)	54, 179, 210, 224, 312, 336, 446
SspI	AATATT	2 cut(s)	133, 230
SspMI	CTAG	2 cut(s)	155, 806
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	181, 787
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	505, 715
TaiI	ACGT	3 cut(s)	70, 258, 646
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	1 cut(s)	473
TasI	AATT	8 cut(s)	5, 117, 390, 689, 732, 816, 830, 848
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	3 cut(s)	107, 140, 560
Tru1I	TTAA	6 cut(s)	120, 206, 243, 627, 710, 828
Tru9I	TTAA	6 cut(s)	120, 206, 243, 627, 710, 828
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	6 cut(s)	116, 138, 185, 189, 261, 624
TspGWI	ACGGA	2 cut(s)	34, 272
VpaK11BI	GGWCC	1 cut(s)	411
VspI	ATTAAT	1 cut(s)	120
XmnI	GAANNNNTTC	2 cut(s)	331, 394
XspI	CTAG	2 cut(s)	155, 806
ZrmI	AGTACT	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.