Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005978

Physical Location & Seq

Genomic Coordinates Forward (+)

49548493 .. 49549236

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCTAATATTTACAACGCTCTGGTAGTTAAGGGTCGAGATACCGCTGGTCAACAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTTTAAGTGTTCCAGTCGGCGGAGCGACTCTAGGACGAATTTTTAACGTACTTGGAGAGCCTGTGGATAATTTAGGTCCTGTAGATACTCGTACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATCCAGTTAGATACAAAACTATCCATTTTTGAAACAGGAATTAAAGTTGTAGATCTTCTAGCCCCTTATCGTCGTGGAGGAAAAATCGGACTTTTTGGGGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTGATCAACAACATTGCCAAAGCTCATGGGGGTGTATCCGTATTTGGCGGAGTGGGTGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCCGGCGTAATTAATGAACAAAATATTCCCGAATCAAAAGTGGCTCTAGTCTATGGTCAAATGAATGAACCGCCCGGAGCTTGTATGAGGGTTGGTTTAACCGTTCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACTTACTTCTATTTATCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N

Protein Analysis

247

Amino Acids

26.41

Weight (kDa)

6.32

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab_N	PF02874	1 - 56	2e-12	ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab	PF00006	113 - 233	1.8e-26	ATP synthase alpha/beta family, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00480
malus_domestica	MD01G1070700.v1.1 MD11G1295200.v1.1
pyrus_communis	pycom12397g00260
rosa_chinensis	RchiOBHm_Chr7g0228801 RchiOBHm_CPg0502121
rosa_laevigata	RLG00000000068 RLG00000000107 RLG00000000164 RLG00000000222 RLG00000000258 RLG00000000268 RLG00000000291 RLG00000000323 RLG00000000330 RLG00000000349 RLG00000030424 RLG00000037106
rosa_multiflora	Rmu_sc0013945.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030890
rosa_rugosa	RorugMtG0002300
rosa_samantha	Rh4BG163500 Rh6AG222700 Rh6BG226200 Rh7AG405300
rosa_wichuraiana	Rw6G019450 Rw7G033580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	708
AciI	CCGC	5 cut(s)	45, 192, 483, 608, 653
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	5 cut(s)	78, 222, 265, 423, 499
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	332
AluBI	AGCT	6 cut(s)	110, 116, 170, 404, 458, 617
AluI	AGCT	6 cut(s)	110, 116, 170, 404, 458, 617
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	706
ApoI	RAATTY	1 cut(s)	210
AseI	ATTAAT	2 cut(s)	60, 549
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	1 cut(s)	125
BciVI	GTATCC	2 cut(s)	481, 728
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	4 cut(s)	203, 359, 584, 713
BfmI	CTRYAG	3 cut(s)	111, 126, 252
BfuI	GTATCC	2 cut(s)	481, 728
BglII	AGATCT	2 cut(s)	284, 352
BlnI	CCTAGG	1 cut(s)	712
BmcAI	AGTACT	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	710
BmrFI	CCNGG	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	712
BsaXI	ACNNNNNCTCC	8 cut(s)	154, 184, 219, 249, 256, 286, 393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	185, 304
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	712
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	185, 304
BshNI	GGYRCC	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	540, 612
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	706
BsmBI	CGTCTC	1 cut(s)	706
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	284, 352, 438, 514
BspACI	CCGC	5 cut(s)	45, 192, 483, 608, 653
BspLI	GGNNCC	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	708
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	185, 304
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	4 cut(s)	284, 352, 438, 514
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	712
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	421, 640, 725
BstC8I	GCNNGC	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	4 cut(s)	287, 355, 441, 517
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	4 cut(s)	284, 352, 438, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	3 cut(s)	111, 126, 252
BstX2I	RGATCY	2 cut(s)	284, 352
BstYI	RGATCY	2 cut(s)	284, 352
BsuI	GTATCC	2 cut(s)	481, 728
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	5 cut(s)	77, 221, 264, 422, 498
CviAII	CATG	2 cut(s)	461, 523
CviQI	GTAC	5 cut(s)	77, 221, 264, 422, 498
DpnI	GATC	4 cut(s)	286, 354, 440, 516
DpnII	GATC	4 cut(s)	284, 352, 438, 514
EciI	GGCGGA	3 cut(s)	207, 498, 668
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	712
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	2 cut(s)	464, 526
FaiI	YATR	8 cut(s)	119, 282, 431, 462, 524, 591, 623, 650
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FatI	CATG	2 cut(s)	460, 522
FbaI	TGATCA	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	172
FspBI	CTAG	4 cut(s)	203, 359, 584, 713
GlaI	GCGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	426
HapII	CCGG	2 cut(s)	540, 612
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	464, 526
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HinfI	GANTC	3 cut(s)	199, 536, 569
HpaII	CCGG	2 cut(s)	540, 612
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	53, 494
Hpy188I	TCNGA	2 cut(s)	389, 665
Hpy188III	TCNNGA	3 cut(s)	38, 503, 566
Hpy8I	GTNNAC	2 cut(s)	53, 494
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	3 cut(s)	421, 640, 725
HpyCH4IV	ACGT	2 cut(s)	219, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpySE526I	ACGT	2 cut(s)	219, 496
Hsp92II	CATG	2 cut(s)	464, 526
HspAI	GCGC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	284, 352, 438, 514
LmnI	GCTCC	5 cut(s)	167, 175, 194, 401, 614
MaeI	CTAG	4 cut(s)	203, 359, 584, 713
MaeII	ACGT	2 cut(s)	219, 496
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	286, 354, 440, 516
MboI	GATC	4 cut(s)	284, 352, 438, 514
MboII	GAAGA	1 cut(s)	347
MflI	RGATCY	2 cut(s)	284, 352
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	7 cut(s)	57, 83, 210, 241, 339, 434, 546
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	137, 371, 618
MseI	TTAA	8 cut(s)	30, 60, 176, 216, 342, 549, 635, 672
MslI	CAYNNNNRTG	2 cut(s)	465, 527
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	540, 612
MspR9I	CCNGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	612
NdeII	GATC	4 cut(s)	284, 352, 438, 514
NlaIII	CATG	2 cut(s)	464, 526
NlaIV	GGNNCC	1 cut(s)	710
NmuCI	GTSAC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	536, 569
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	248
PshBI	ATTAAT	2 cut(s)	60, 549
Psp124BI	GAGCTC	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	710
PspPI	GGNCC	1 cut(s)	248
PspPPI	RGGWCCY	1 cut(s)	248
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PsuI	RGATCY	2 cut(s)	284, 352
RsaI	GTAC	5 cut(s)	78, 222, 265, 423, 499
RsaNI	GTAC	5 cut(s)	77, 221, 264, 422, 498
RseI	CAYNNNNRTG	2 cut(s)	465, 527
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	8 cut(s)	30, 60, 176, 216, 342, 549, 635, 672
Sau3AI	GATC	4 cut(s)	284, 352, 438, 514
Sau96I	GGNCC	1 cut(s)	248
ScaI	AGTACT	1 cut(s)	423
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	172
SfcI	CTRYAG	3 cut(s)	111, 126, 252
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	465, 527
Sse9I	AATT	7 cut(s)	57, 83, 210, 241, 339, 434, 546
SsiI	CCGC	5 cut(s)	45, 192, 483, 608, 653
SspI	AATATT	3 cut(s)	10, 562, 659
SspMI	CTAG	4 cut(s)	203, 359, 584, 713
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	3 cut(s)	421, 640, 725
TaiI	ACGT	2 cut(s)	222, 499
TaqI	TCGA	2 cut(s)	37, 100
TasI	AATT	7 cut(s)	57, 83, 210, 241, 339, 434, 546
TatI	WGTACW	2 cut(s)	76, 421
TfiI	GAWTC	2 cut(s)	536, 569
Tru1I	TTAA	8 cut(s)	30, 60, 176, 216, 342, 549, 635, 672
Tru9I	TTAA	8 cut(s)	30, 60, 176, 216, 342, 549, 635, 672
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	6 cut(s)	269, 545, 567, 614, 618, 690
TspGWI	ACGGA	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	248
VspI	ATTAAT	2 cut(s)	60, 549
XapI	RAATTY	1 cut(s)	210
XmaJI	CCTAGG	1 cut(s)	712
XspI	CTAG	4 cut(s)	203, 359, 584, 713
ZrmI	AGTACT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.