Rmu_sc0013945.1_g000006

ATP synthase subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013945.1
OG0005978
Physical Location & Seq
Forward (+)
20267 .. 22582
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013945.1_g000006.1.cds

Sequence Viewer

Length: 981 bp
atgagtgcttcagatggtctagcgagaggaatagaagtgattgacacaggagctcctttaagtgttctagtcggcggagcgactctagaactaatttttaacttacttggagagcctgtggataatttaggtcctgtagatactcgtacaacatctcctattcatagatctgcgcctgcctttatccagttagatacaaaactatccatttttgaaacaagaattaaagttgtagatcatctagccccttatcaacgtggaggaaaaatcagactttttgggggagctggaatgggtaaaacagtactcattatggaattgatcaacaacattgccaaagctcatgggggtgtatccgtatttggcagagtgggtgaacgtactagtgaaggaaatgatctttacatggaaatgaaagaatccggcgtaattaatgaacaaaatattcccaaatcaaaagtggctctagtctatggtcaaatgaatgaaccgcccggagcttgtatgatggttggtttaaccgtcctaactatggcggaatatttccgagatgttaatgaacaagacttacttctatttattgtctctaggtgcctaggtatccaccgcaaagcggtggagtgctgctccctagatggcgagagtccagtagccgaaagcatcactagcttactctctgacccgagtagcatgagacacgtggaatcccgtgtgaatcagcaaggaccaccttccaaggctaaatactcctgggatgaagcttgggtgaaactaagtggaggtccaaaccgattgatgttgaagaatcagcggataagttgtgggtcaaggtcggccattgagacggtgggggataagcttcatcgtcgagagggaaacaacccggatcaccagctaaggcccctaaatgatcgctcagtgataaaggaggtaggggtgcagagacaaccaggaggtttgcctagaagcaaccacccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N

Protein Analysis

326

Amino Acids

35.44

Weight (kDa)

7.69

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 591
AciI CCGC 6 cut(s) 75, 491, 536, 607, 614, 811
AclWI GGATC 1 cut(s) 894
AcoI YGGCCR 1 cut(s) 834
AcvI CACGTG 1 cut(s) 700
AfaI GTAC 3 cut(s) 148, 306, 382
AfiI CCNNNNNNNGG 2 cut(s) 532, 613
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 2 cut(s) 215, 802
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 2 cut(s) 749, 949
AluBI AGCT 8 cut(s) 53, 287, 341, 500, 669, 761, 859, 895
AluI AGCT 8 cut(s) 53, 287, 341, 500, 669, 761, 859, 895
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 4 cut(s) 589, 688, 836, 937
AlwI GGATC 1 cut(s) 894
Ama87I CYCGRG 1 cut(s) 682
AoxI GGCC 2 cut(s) 834, 899
ApeKI GCWGC 1 cut(s) 624
AseI ATTAAT 1 cut(s) 432
AspA2I CCTAGG 1 cut(s) 595
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 4 cut(s) 131, 725, 782, 900
AsuC2I CCSGG 2 cut(s) 495, 884
AsuHPI GGTGA 3 cut(s) 386, 778, 881
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 3 cut(s) 131, 725, 782
AvrII CCTAGG 1 cut(s) 595
BanI GGYRCC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 55
BbrPI CACGTG 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 611
BccI CCATC 3 cut(s) 8, 502, 629
BciT130I CCWGG 2 cut(s) 751, 951
BciVI GTATCC 2 cut(s) 364, 611
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 2 cut(s) 495, 884
BcoDI GTCTC 4 cut(s) 589, 688, 836, 937
BcuI ACTAGT 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 135
BfuI GTATCC 2 cut(s) 364, 611
BglII AGATCT 1 cut(s) 167
BisI GCNGC 1 cut(s) 625
BlnI CCTAGG 1 cut(s) 595
BlsI GCNGC 1 cut(s) 626
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 4 cut(s) 495, 751, 884, 951
Bme18I GGWCC 3 cut(s) 131, 725, 782
BmeT110I CYCGRG 1 cut(s) 682
BmgT120I GGNCC 4 cut(s) 131, 725, 782, 900
BmiI GGNNCC 2 cut(s) 593, 902
BmrFI CCNGG 4 cut(s) 495, 751, 884, 951
BmsI GCATC 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 611, 643
Bpu10I CCTNAGC 1 cut(s) 896
BpuMI CCSGG 2 cut(s) 495, 884
BsaAI YACGTR 1 cut(s) 700
BsaJI CCNNGG 3 cut(s) 595, 735, 750
BsaXI ACNNNNNCTCC 6 cut(s) 37, 67, 102, 132, 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 613
Bse1I ACTGG 2 cut(s) 187, 647
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 751, 951
BseDI CCNNGG 3 cut(s) 595, 735, 750
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 2 cut(s) 532, 613
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 2 cut(s) 187, 647
BseXI GCAGC 1 cut(s) 611
BsgI GTGCAG 1 cut(s) 959
BshFI GGCC 2 cut(s) 836, 901
BshNI GGYRCC 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 3 cut(s) 423, 495, 884
BslI CCNNNNNNNGG 2 cut(s) 532, 613
BsmAI GTCTC 4 cut(s) 589, 688, 836, 937
BsmBI CGTCTC 1 cut(s) 836
BsnI GGCC 2 cut(s) 836, 901
BsoBI CYCGRG 1 cut(s) 682
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 6 cut(s) 167, 235, 321, 397, 886, 910
BspACI CCGC 6 cut(s) 75, 491, 536, 607, 614, 811
BspANI GGCC 2 cut(s) 836, 901
BspCNI CTCAG 1 cut(s) 929
BspLI GGNNCC 2 cut(s) 593, 902
BspPI GGATC 1 cut(s) 894
BspT107I GGYRCC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 2 cut(s) 187, 647
BssECI CCNNGG 3 cut(s) 595, 735, 750
BssMI GATC 6 cut(s) 167, 235, 321, 397, 886, 910
BssT1I CCWWGG 2 cut(s) 595, 735
Bst2UI CCWGG 2 cut(s) 751, 951
Bst4CI ACNGT 3 cut(s) 304, 523, 847
BstBAI YACGTR 1 cut(s) 700
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 773, 896, 916
BstF5I GGATG 1 cut(s) 760
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 6 cut(s) 170, 238, 324, 400, 889, 913
BstMAI GTCTC 4 cut(s) 589, 688, 836, 937
BstMBI GATC 6 cut(s) 167, 235, 321, 397, 886, 910
BstMWI GCNNNNNNNGC 1 cut(s) 666
BstNI CCWGG 2 cut(s) 751, 951
BstSCI CCNGG 4 cut(s) 493, 749, 882, 949
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuI GTATCC 2 cut(s) 364, 611
BsuRI GGCC 2 cut(s) 836, 901
BtsCI GGATG 1 cut(s) 760
BtsIMutI CAGTG 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 4 cut(s) 131, 725, 782, 900
Csp6I GTAC 3 cut(s) 147, 305, 381
CviAII CATG 3 cut(s) 344, 406, 691
CviQI GTAC 3 cut(s) 147, 305, 381
DdeI CTNAG 3 cut(s) 773, 896, 916
DpnI GATC 6 cut(s) 169, 237, 323, 399, 888, 912
DpnII GATC 6 cut(s) 167, 235, 321, 397, 886, 910
EaeI YGGCCR 1 cut(s) 834
EciI GGCGGA 2 cut(s) 90, 551
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 595, 735
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 3 cut(s) 131, 725, 782
Eco53kI GAGCTC 1 cut(s) 53
Eco72I CACGTG 1 cut(s) 700
Eco88I CYCGRG 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 53
EcoO109I RGGNCCY 2 cut(s) 131, 900
EcoRII CCWGG 2 cut(s) 749, 949
EcoT14I CCWWGG 2 cut(s) 595, 735
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 595, 735
Esp3I CGTCTC 1 cut(s) 836
FaeI CATG 3 cut(s) 347, 409, 694
FaiI YATR 8 cut(s) 165, 314, 345, 407, 474, 506, 533, 692
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 3 cut(s) 343, 405, 690
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 625
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 625
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 625
HaeIII GGCC 2 cut(s) 836, 901
HapII CCGG 3 cut(s) 423, 495, 884
HhaI GCGC 1 cut(s) 175
Hin1II CATG 3 cut(s) 347, 409, 694
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 2 cut(s) 759, 857
HinfI GANTC 6 cut(s) 82, 419, 643, 704, 715, 805
HpaII CCGG 3 cut(s) 423, 495, 884
HphI GGTGA 3 cut(s) 386, 778, 881
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 4 cut(s) 13, 272, 548, 679
Hpy188III TCNNGA 2 cut(s) 86, 869
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 2 cut(s) 383, 741
HpyCH4III ACNGT 3 cut(s) 304, 523, 847
HpyCH4IV ACGT 3 cut(s) 256, 379, 699
HpyCH4V TGCA 1 cut(s) 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 666
HpyF3I CTNAG 3 cut(s) 773, 896, 916
HpySE526I ACGT 3 cut(s) 256, 379, 699
Hsp92II CATG 3 cut(s) 347, 409, 694
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 6 cut(s) 167, 235, 321, 397, 886, 910
LmnI GCTCC 6 cut(s) 50, 58, 77, 284, 497, 632
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 1 cut(s) 669
MaeII ACGT 3 cut(s) 256, 379, 699
MalI GATC 6 cut(s) 169, 237, 323, 399, 888, 912
MboI GATC 6 cut(s) 167, 235, 321, 397, 886, 910
MboII GAAGA 1 cut(s) 814
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 5 cut(s) 93, 124, 222, 317, 429
MlyI GAGTC 2 cut(s) 76, 652
MnlI CCTC 6 cut(s) 20, 254, 773, 865, 922, 947
MseI TTAA 6 cut(s) 59, 99, 225, 432, 518, 555
MslI CAYNNNNRTG 2 cut(s) 348, 410
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 3 cut(s) 423, 495, 884
MspR9I CCNGG 4 cut(s) 495, 751, 884, 951
MvaI CCWGG 2 cut(s) 751, 951
MwoI GCNNNNNNNGC 1 cut(s) 666
NciI CCSGG 2 cut(s) 495, 884
NdeII GATC 6 cut(s) 167, 235, 321, 397, 886, 910
NlaIII CATG 3 cut(s) 347, 409, 694
NlaIV GGNNCC 2 cut(s) 593, 902
PfeI GAWTC 4 cut(s) 419, 704, 715, 805
PkrI GCNGC 1 cut(s) 626
PleI GAGTC 2 cut(s) 76, 651
PmaCI CACGTG 1 cut(s) 700
PmlI CACGTG 1 cut(s) 700
PpsI GAGTC 2 cut(s) 76, 651
Ppu21I YACGTR 1 cut(s) 700
PpuMI RGGWCCY 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 749, 949
PspCI CACGTG 1 cut(s) 700
PspGI CCWGG 2 cut(s) 749, 949
PspN4I GGNNCC 2 cut(s) 593, 902
PspPI GGNCC 4 cut(s) 131, 725, 782, 900
PspPPI RGGWCCY 1 cut(s) 131
PsrI GAACNNNNNNTAC 2 cut(s) 552, 584
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 3 cut(s) 148, 306, 382
RsaNI GTAC 3 cut(s) 147, 305, 381
RseI CAYNNNNRTG 2 cut(s) 348, 410
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 6 cut(s) 59, 99, 225, 432, 518, 555
SatI GCNGC 1 cut(s) 625
Sau3AI GATC 6 cut(s) 167, 235, 321, 397, 886, 910
Sau96I GGNCC 4 cut(s) 131, 725, 782, 900
ScaI AGTACT 1 cut(s) 306
SchI GAGTC 2 cut(s) 76, 652
ScrFI CCNGG 4 cut(s) 495, 751, 884, 951
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 1 cut(s) 669
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 3 cut(s) 131, 725, 782
SmiMI CAYNNNNRTG 2 cut(s) 348, 410
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 5 cut(s) 93, 124, 222, 317, 429
SsiI CCGC 6 cut(s) 75, 491, 536, 607, 614, 811
SspI AATATT 2 cut(s) 445, 542
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 4 cut(s) 493, 749, 882, 949
StyI CCWWGG 2 cut(s) 595, 735
TaaI ACNGT 3 cut(s) 304, 523, 847
TaiI ACGT 3 cut(s) 259, 382, 702
TaqI TCGA 1 cut(s) 868
TasI AATT 5 cut(s) 93, 124, 222, 317, 429
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 4 cut(s) 419, 704, 715, 805
Tru1I TTAA 6 cut(s) 59, 99, 225, 432, 518, 555
Tru9I TTAA 6 cut(s) 59, 99, 225, 432, 518, 555
TscAI CASTG 1 cut(s) 924
TseI GCWGC 1 cut(s) 624
TspDTI ATGAA 8 cut(s) 152, 428, 450, 497, 501, 573, 771, 851
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 924
VpaK11BI GGWCC 3 cut(s) 131, 725, 782
VspI ATTAAT 1 cut(s) 432
XbaI TCTAGA 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 2 cut(s) 457, 844
XmaJI CCTAGG 1 cut(s) 595
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.